View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16068_low_98 (Length: 222)
Name: NF16068_low_98
Description: NF16068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16068_low_98 |
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Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 13 - 204
Target Start/End: Complemental strand, 7484192 - 7484001
Alignment:
| Q |
13 |
taatactggtgtaggaactctaggttttggtggagcaagtacttcaagaattaaagatggtacaaataataaaattggtgctattctaaaacttggtgat |
112 |
Q |
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| T |
7484192 |
taatactggtgtaggaactctaggttttggtggagcaagtacttcaagaattaaagatggtacaaataataaaattggtgctattctaaaacttggtgat |
7484093 |
T |
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| Q |
113 |
tcttctactgccacaagttcaagctcaaacacaaacaagaaaaatgttgtggctactacttctgcaatggatgatgatataaagtcaaacat |
204 |
Q |
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| T |
7484092 |
tcttctactgccacaagttcaagctcaaacacaaacaagaaaaatgttgtggctactacttctgcaatggatgatgatataaagtcaaacat |
7484001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 13 - 191
Target Start/End: Complemental strand, 7490946 - 7490768
Alignment:
| Q |
13 |
taatactggtgtaggaactctaggttttggtggagcaagtacttcaagaattaaagatggtacaaataataaaattggtgctattctaaaacttggtgat |
112 |
Q |
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| T |
7490946 |
taatactggagtaggaactctaggttttggtggagcaagtacttcaagaattgaagatggtacaaataataaaattggtgctattctaaaacttggagat |
7490847 |
T |
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| Q |
113 |
tcttctactgccacaagttcaagctcaaacacaaacaagaaaaatgttgtggctactacttctgcaatggatgatgata |
191 |
Q |
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| T |
7490846 |
tcttctattgctacaagttcaagctcaaacacaaacaagaaaaatgttgtggctgctacttctgcaatggatgatgata |
7490768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 85 - 191
Target Start/End: Complemental strand, 7498619 - 7498513
Alignment:
| Q |
85 |
aattggtgctattctaaaacttggtgattcttctactgccacaagttcaagctcaaacacaaacaagaaaaatgttgtggctactacttctgcaatggat |
184 |
Q |
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| T |
7498619 |
aattggtgctattctaaaacttggagattcttctattgctacaagttcaagctcaaacacaaacaaggaaaatgtcgtggctactacttctgcaatggat |
7498520 |
T |
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| Q |
185 |
gatgata |
191 |
Q |
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||||||| |
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| T |
7498519 |
gatgata |
7498513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 13 - 64
Target Start/End: Complemental strand, 7498667 - 7498616
Alignment:
| Q |
13 |
taatactggtgtaggaactctaggttttggtggagcaagtacttcaagaatt |
64 |
Q |
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| T |
7498667 |
taatactggagttggaactctaggttttggtggagcaagtacttcaagaatt |
7498616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 9e-23; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 26 - 120
Target Start/End: Original strand, 3167625 - 3167719
Alignment:
| Q |
26 |
ggaactctaggttttggtggagcaagtacttcaagaattaaagatggtacaaataataaaattggtgctattctaaaacttggtgattcttctac |
120 |
Q |
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|||| ||| ||| ||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||| | || ||||||||||| |
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| T |
3167625 |
ggaattcttggtattggtggtgcaagtacttcaaggatagaagatggtacaaataataaaattggtgctattctaaaattaggagattcttctac |
3167719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 39 - 120
Target Start/End: Complemental strand, 3156653 - 3156572
Alignment:
| Q |
39 |
ttggtggagcaagtacttcaagaattaaagatggtacaaataataaaattggtgctattctaaaacttggtgattcttctac |
120 |
Q |
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| T |
3156653 |
ttggtggtgcaagtacttcaaggattgaagatggtacaaataataaaataggtgctattctaaaattaggagattcttctac |
3156572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 26 - 120
Target Start/End: Complemental strand, 3138934 - 3138840
Alignment:
| Q |
26 |
ggaactctaggttttggtggagcaagtacttcaagaattaaagatggtacaaataataaaattggtgctattctaaaacttggtgattcttctac |
120 |
Q |
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|||| ||||||| ||||||| |||| |||||||| || || |||||||| |||||||||||||||||||| || || | || ||||||||||| |
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| T |
3138934 |
ggaaatctaggtattggtggtgcaactacttcaaagatcgaatatggtacatataataaaattggtgctattttagaattgggagattcttctac |
3138840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 120
Target Start/End: Original strand, 23852496 - 23852587
Alignment:
| Q |
32 |
ctaggttttggtggagcaagtacttcaagaattaaagatggtaca---aataataaaattggtgctattctaaaacttggtgattcttctac |
120 |
Q |
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| T |
23852496 |
ctaggtattggcggtgcaactacttcaagaatcgaagatggtacaaataataataaaattggtgctattttaaaattgggagattcttctac |
23852587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 97
Target Start/End: Original strand, 1725228 - 1725299
Alignment:
| Q |
26 |
ggaactctaggttttggtggagcaagtacttcaagaattaaagatggtacaaataataaaattggtgctatt |
97 |
Q |
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|||| ||||||| ||||||| | || ||||||||| ||| |||||| |||||||||||||||||||||||| |
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| T |
1725228 |
ggaattctaggtattggtggtggaactacttcaaggattgaagatgacacaaataataaaattggtgctatt |
1725299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 120
Target Start/End: Original strand, 1739583 - 1739677
Alignment:
| Q |
26 |
ggaactctaggttttggtggagcaagtacttcaagaattaaagatggtacaaataataaaattggtgctattctaaaacttggtgattcttctac |
120 |
Q |
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|||| |||||| |||||||| |||| | |||| || ||| |||||||||| ||| | || |||||||||||| ||||| ||| ||||||||||| |
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| T |
1739583 |
ggaattctaggatttggtggtgcaactgcttcgaggattgaagatggtacgaatgacaagattggtgctattataaaatctggagattcttctac |
1739677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 1744752 - 1744805
Alignment:
| Q |
23 |
gtaggaactctaggttttggtggagcaagtacttcaagaattaaagatggtaca |
76 |
Q |
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||||||| |||||| |||||||| |||| ||||||||| ||| ||||||||||| |
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| T |
1744752 |
gtaggaattctaggatttggtggtgcaattacttcaaggattgaagatggtaca |
1744805 |
T |
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