View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16069_high_1 (Length: 309)
Name: NF16069_high_1
Description: NF16069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16069_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 18 - 293
Target Start/End: Complemental strand, 8571486 - 8571211
Alignment:
| Q |
18 |
aagaatcataatgttgttttatctagctttcctcaacattagtactaaacttgtcataaatgttacaggaaagacttacaggcttagaatatcaaacgtg |
117 |
Q |
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| T |
8571486 |
aagaatcataatgttgttttatttagctttcctcaacattagtactaaacttgtcataaatgttacaggaaagacttacaggcttagaatatcaaacgtg |
8571387 |
T |
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| Q |
118 |
ggattggaaaattcactcaactttcgcatacagaaccacaagatgaagctggtagaagtggaaggaacacacaccctccaaaccacctattcctcccttg |
217 |
Q |
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| T |
8571386 |
ggattggaaaattcactcaactttcgcatacagaaccacaagatgaagctggtagaagtggaaggaacacacaccctccaaaccacctattcctcccttg |
8571287 |
T |
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| Q |
218 |
acgttcacgtcggtcaatcatattcagttctagtaaccgcagatcaacctggtcaagactattatattgttgtttc |
293 |
Q |
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| T |
8571286 |
acgttcacgtcggtcaatcatactcagttctagtaaccgcagatcaacctagtcaagactattatattgttgtttc |
8571211 |
T |
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Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 82 - 267
Target Start/End: Complemental strand, 53750658 - 53750473
Alignment:
| Q |
82 |
acaggaaagacttacaggcttagaatatcaaacgtgggattggaaaattcactcaactttcgcatacagaaccacaagatgaagctggtagaagtggaag |
181 |
Q |
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|||||||||||||| |||||||| |||||||||||||||||| || |||| || |||||||| || || |||||||| ||||| ||||||||||||||| |
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| T |
53750658 |
acaggaaagacttataggcttaggatatcaaacgtgggattgcaacattcccttaactttcgaattcaaaaccacaaattgaagttggtagaagtggaag |
53750559 |
T |
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| Q |
182 |
gaacacacaccctccaaaccacctattcctcccttgacgttcacgtcggtcaatcatattcagttctagtaaccgcagatcaacct |
267 |
Q |
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| T |
53750558 |
gaacacacacacttcaaactacatactcctcacttgatgttcatgtgggacaatcttactcagtgctagtaactgctgatcaacct |
53750473 |
T |
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