View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1606_high_15 (Length: 334)
Name: NF1606_high_15
Description: NF1606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1606_high_15 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 16 - 334
Target Start/End: Complemental strand, 17258673 - 17258356
Alignment:
| Q |
16 |
gattttcattggctt-ggtaatagaggcctctcctgatttaacgtcaccaacataatcagaagttatgttgtccaataacctcttcagtcccactatact |
114 |
Q |
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| T |
17258673 |
gattttcattggctttggtaatagaagcctctcctgatttaacgtcaccaacatcatcggaagttatgtt--ccaatgacctcttcagtcccactttact |
17258576 |
T |
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| Q |
115 |
gatcggagtctcaattatagctgtgttgcagcaagaatcgccacattccaagatatcctacagacaataatgaagcaaaattaataaatacatgctgtag |
214 |
Q |
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| T |
17258575 |
gatcgaagtctcaattatagttgtgttgcagcaagaatcgcgacattctaagatatcctacatacaataatgaagcaaaattaataaatacatgctgcag |
17258476 |
T |
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| Q |
215 |
aaacgtccttgaaaagttttgataataagtgaatcatctaactttgtcttagcacattttgagaaccggcaaccaaatgaggttcgtcgatagtgtacaa |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| || |
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| T |
17258475 |
aaacgtccttgaaaagttttgataataagtgaatcatctaactttgtcttaccacattttgagaaccggtaaccaaatgaggttcgtcgatagtgtagaa |
17258376 |
T |
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| Q |
315 |
tccatcttccagtacattgc |
334 |
Q |
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| T |
17258375 |
tccatcttccggtccattgc |
17258356 |
T |
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