View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1606_high_23 (Length: 239)
Name: NF1606_high_23
Description: NF1606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1606_high_23 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 488845 - 489064
Alignment:
| Q |
19 |
aaagaacaagaaaaaattgaatgaatttgaaaactataggataatgaaacannnnnnnn-gtgcttctgattctaaaaagttggcagttctatttcaatg |
117 |
Q |
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| T |
488845 |
aaagaacaaggaaaaattgaatgaatttgaaaactataggataatgaaacatttttttttgttcttctgattctaaaa-gttggcagttctatttcaatg |
488943 |
T |
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| Q |
118 |
nnnnnnnttatcttctctgttagcttagtaaagcatgttcaattaccaagaaagcagctaagctgtttgcagattcaaactaatgagagtcaacttcaag |
217 |
Q |
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| T |
488944 |
aaaaaaattatcttctctgttagcttagtaaagcatgttcaattaccaagaa-gcagctaagctgtttacagattcaaactaatgagagtcaacttcaag |
489042 |
T |
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| Q |
218 |
caagagtacatattttgaatat |
239 |
Q |
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| T |
489043 |
caagagtacatattttgaatat |
489064 |
T |
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