View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1606_high_6 (Length: 441)

Name: NF1606_high_6
Description: NF1606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1606_high_6
NF1606_high_6
[»] chr7 (19 HSPs)
chr7 (11-360)||(21688220-21688562)
chr7 (37-153)||(23704368-23704484)
chr7 (48-162)||(21932632-21932746)
chr7 (168-294)||(21738123-21738252)
chr7 (37-152)||(35300328-35300443)
chr7 (49-162)||(19377523-19377637)
chr7 (49-129)||(4843432-4843512)
chr7 (57-148)||(7873124-7873215)
chr7 (53-148)||(5991324-5991419)
chr7 (50-148)||(22206590-22206688)
chr7 (50-148)||(22228051-22228149)
chr7 (78-162)||(26722849-26722933)
chr7 (49-152)||(38991077-38991180)
chr7 (37-71)||(3012443-3012477)
chr7 (48-152)||(28693903-28694007)
chr7 (187-229)||(21626865-21626908)
chr7 (37-76)||(38128936-38128975)
chr7 (16-71)||(814933-814990)
chr7 (79-156)||(42439458-42439535)
[»] chr6 (16 HSPs)
chr6 (40-152)||(23663659-23663771)
chr6 (37-148)||(9696156-9696267)
chr6 (40-152)||(2941326-2941438)
chr6 (37-162)||(15122144-15122269)
chr6 (37-164)||(15529047-15529174)
chr6 (50-162)||(10397699-10397811)
chr6 (37-149)||(34248916-34249028)
chr6 (37-152)||(2836067-2836182)
chr6 (40-148)||(9046819-9046927)
chr6 (78-166)||(1780929-1781017)
chr6 (49-96)||(34188911-34188958)
chr6 (55-153)||(14938821-14938919)
chr6 (50-148)||(28614308-28614406)
chr6 (37-149)||(31188215-31188327)
chr6 (58-116)||(2960794-2960852)
chr6 (37-96)||(31200113-31200172)
[»] chr3 (14 HSPs)
chr3 (37-153)||(33178991-33179107)
chr3 (37-152)||(7501062-7501177)
chr3 (37-152)||(14461171-14461286)
chr3 (39-152)||(28311385-28311498)
chr3 (49-162)||(41218245-41218358)
chr3 (37-162)||(43700083-43700208)
chr3 (40-152)||(44047693-44047804)
chr3 (37-152)||(53652004-53652119)
chr3 (37-152)||(12909934-12910047)
chr3 (78-152)||(26370942-26371016)
chr3 (78-152)||(37516768-37516842)
chr3 (37-71)||(25391805-25391839)
chr3 (37-71)||(26371002-26371036)
chr3 (37-71)||(37516748-37516782)
[»] chr8 (11 HSPs)
chr8 (37-152)||(36406389-36406504)
chr8 (37-152)||(28928160-28928275)
chr8 (37-129)||(3383942-3384034)
chr8 (48-148)||(34282764-34282864)
chr8 (53-161)||(27321753-27321861)
chr8 (49-93)||(34282840-34282884)
chr8 (48-151)||(13243242-13243345)
chr8 (40-90)||(39431591-39431641)
chr8 (49-92)||(13243222-13243265)
chr8 (73-162)||(24965148-24965237)
chr8 (62-152)||(35384265-35384355)
[»] chr5 (24 HSPs)
chr5 (37-152)||(35469003-35469118)
chr5 (49-151)||(36234456-36234558)
chr5 (39-148)||(15504051-15504160)
chr5 (37-148)||(14832715-14832826)
chr5 (39-165)||(6900869-6900995)
chr5 (37-151)||(15675413-15675527)
chr5 (37-148)||(2476465-2476576)
chr5 (37-152)||(30249065-30249180)
chr5 (50-148)||(32953572-32953670)
chr5 (37-95)||(34444066-34444124)
chr5 (50-148)||(43228547-43228645)
chr5 (55-148)||(1672391-1672484)
chr5 (50-162)||(16567904-16568016)
chr5 (50-148)||(7161988-7162086)
chr5 (49-148)||(13942657-13942755)
chr5 (78-152)||(33007027-33007101)
chr5 (78-152)||(34846487-34846561)
chr5 (69-148)||(21069153-21069232)
chr5 (37-80)||(39605793-39605836)
chr5 (49-147)||(12267288-12267385)
chr5 (37-93)||(17192585-17192640)
chr5 (37-71)||(21069142-21069176)
chr5 (37-71)||(33007007-33007041)
chr5 (103-162)||(42989662-42989723)
[»] chr2 (19 HSPs)
chr2 (37-151)||(6799786-6799900)
chr2 (40-152)||(41114769-41114881)
chr2 (37-152)||(29257467-29257582)
chr2 (37-148)||(303995-304106)
chr2 (48-151)||(41010624-41010727)
chr2 (37-152)||(13203868-13203983)
chr2 (40-129)||(18299065-18299154)
chr2 (49-129)||(17148909-17148989)
chr2 (37-152)||(12000657-12000773)
chr2 (38-128)||(15651342-15651433)
chr2 (78-162)||(2475948-2476032)
chr2 (78-153)||(33909245-33909320)
chr2 (48-93)||(25563084-25563129)
chr2 (203-266)||(11816397-11816459)
chr2 (37-71)||(2475928-2475962)
chr2 (41-71)||(17249456-17249486)
chr2 (78-152)||(22572621-22572695)
chr2 (69-162)||(17249463-17249556)
chr2 (49-90)||(41010604-41010645)
[»] scaffold0618 (1 HSPs)
scaffold0618 (37-152)||(1796-1911)
[»] chr4 (20 HSPs)
chr4 (37-152)||(4552286-4552401)
chr4 (37-152)||(10715757-10715872)
chr4 (37-152)||(10929527-10929642)
chr4 (37-162)||(32005984-32006109)
chr4 (37-152)||(46645704-46645819)
chr4 (37-151)||(4728659-4728773)
chr4 (55-148)||(43003088-43003181)
chr4 (37-152)||(2017337-2017452)
chr4 (49-152)||(52373867-52373970)
chr4 (50-162)||(9003669-9003781)
chr4 (37-148)||(40969325-40969436)
chr4 (37-152)||(2521798-2521913)
chr4 (53-141)||(50099987-50100075)
chr4 (37-149)||(2576273-2576385)
chr4 (44-95)||(1585777-1585828)
chr4 (78-152)||(10058658-10058732)
chr4 (49-143)||(49745168-49745263)
chr4 (37-71)||(10058638-10058672)
chr4 (37-71)||(25237710-25237744)
chr4 (79-152)||(41972342-41972415)
[»] chr1 (21 HSPs)
chr1 (37-152)||(25007564-25007679)
chr1 (37-152)||(37153890-37154005)
chr1 (37-148)||(14727430-14727541)
chr1 (36-152)||(27583917-27584029)
chr1 (37-152)||(44305512-44305627)
chr1 (37-161)||(4641928-4642052)
chr1 (50-148)||(4774085-4774183)
chr1 (40-148)||(25011441-25011549)
chr1 (37-152)||(1428319-1428434)
chr1 (40-153)||(44238744-44238853)
chr1 (50-149)||(27460792-27460890)
chr1 (69-152)||(34459253-34459336)
chr1 (78-152)||(31844541-31844615)
chr1 (48-109)||(48940348-48940409)
chr1 (69-148)||(6801988-6802067)
chr1 (69-152)||(33468871-33468954)
chr1 (78-152)||(24646189-24646263)
chr1 (37-71)||(6331786-6331820)
chr1 (37-71)||(8239393-8239427)
chr1 (37-71)||(31844601-31844635)
chr1 (78-148)||(49898529-49898599)
[»] scaffold0075 (2 HSPs)
scaffold0075 (37-152)||(11624-11739)
scaffold0075 (37-95)||(7011-7069)
[»] scaffold0182 (1 HSPs)
scaffold0182 (199-360)||(15215-15369)
[»] scaffold0638 (1 HSPs)
scaffold0638 (78-148)||(4219-4289)


Alignment Details
Target: chr7 (Bit Score: 176; Significance: 1e-94; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 11 - 360
Target Start/End: Original strand, 21688220 - 21688562
Alignment:
Q  11 agattatactttagaattttaagatcc--aggaaagatatatccgcaggaaa-tgtgaaattatctgcatgaaatgtgaaattattcgcgtgaaagaaat 107  Q
    |||| |||| |||| ||||||||||||  |||||||||||||||| |  ||| |||||||||||||||| ||||||||||||||||| |   | || | |    
T  21688220 agataataccttaggattttaagatccgcaggaaagatatatccgtattaaaatgtgaaattatctgcaggaaatgtgaaattattcacagaatagcagt 21688319  T
Q  108 aacattttgtgataaaatttttatccagactctataaaattcctgattctgccaccgaccgtaaatgtaatggttgtacaaaatcat-cacgtgtaacat 206  Q
    |||||||||||||||| |||||  | ||| |||||||||||||||| || |||||  || |||||||||||| |||||||||||||| ||||||||||||    
T  21688320 aacattttgtgataaattttttgcctagattctataaaattcctgactccgccacttactgtaaatgtaatgattgtacaaaatcatgcacgtgtaacat 21688419  T
Q  207 atttattatttataaacttacatgaaaaaacgtaaatatttgtcagtgatgtataaaaaatacgtgactcattaacgtcatctttatctttatatttaat 306  Q
    |||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||| ||||||||||||||      |||||||||||||||    
T  21688420 atttattatttataaacttacatgaaaaaacgtaaatatttgt-----atgtataaaaaatacgagactcattaacgtc------atctttatatttaat 21688508  T
Q  307 aatgagatctttattattcggtaagattttgacatatttctaatctaccatttt 360  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  21688509 aatgagatctttattattcggtaatattttgacatatttctaatctaccatttt 21688562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 37 - 153
Target Start/End: Complemental strand, 23704484 - 23704368
Alignment:
Q  37 caggaaagatatatccgcaggaaatgtgaaattatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccaga 136  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||  ||||||| |||| ||||  |||||| |||||||||| |    
T  23704484 caggaaagatatatccgtaggaaatgtgaaattatctgcaggaaatgtaaaattattcgcaagaaagaagtaacgttttacgataaattttttatccaaa 23704385  T
Q  137 ctctataaaattcctga 153  Q
    |||||||||||||||||    
T  23704384 ctctataaaattcctga 23704368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 48 - 162
Target Start/End: Complemental strand, 21932746 - 21932632
Alignment:
Q  48 tatccgcaggaaatgtgaaattatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccagactctataaaat 147  Q
    |||||||||||||| | |||||||||||| ||||| |||||||||||||  ||||||| |||||||||| |||||| |||||  ||||||||||||||||    
T  21932746 tatccgcaggaaatataaaattatctgcaggaaatatgaaattattcgcaggaaagaagtaacattttgcgataaattttttgcccagactctataaaat 21932647  T
Q  148 tcctgattctgccac 162  Q
    |||||| || |||||    
T  21932646 tcctgactccgccac 21932632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 168 - 294
Target Start/End: Original strand, 21738123 - 21738252
Alignment:
Q  168 gtaaatgtaatggttgtacaaaatcat-cacgtgtaacatatttattatttataaact---tacatgaaaaaacgtaaatatttgtcagtgatgtataaa 263  Q
    |||||||||||||||||||||| | || ||||||||||||||||||||||||| ||||   |||||||||||  |||||||||| |||  ||||||||||    
T  21738123 gtaaatgtaatggttgtacaaagttatgcacgtgtaacatatttattatttatgaactaattacatgaaaaat-gtaaatatttttcaacgatgtataaa 21738221  T
Q  264 aaatacgtgactcattaacgtcatctttatc 294  Q
    ||||||  || | ||||||||||||||||||    
T  21738222 aaatacaggattaattaacgtcatctttatc 21738252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 37 - 152
Target Start/End: Complemental strand, 35300443 - 35300328
Alignment:
Q  37 caggaaagatatatccgcaggaaatgtgaaattatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccaga 136  Q
    ||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||   ||| ||| |||| ||||  |||||| |||||  |||      
T  35300443 caggaaagatatatccgtaggaaatgtgaatttatctgcaggaaatgtgaaattattcgtaagaaggaagtaacgttttacgataaatttttttcccaag 35300344  T
Q  137 ctctataaaattcctg 152  Q
    ||||||||||||||||    
T  35300343 ctctataaaattcctg 35300328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 49 - 162
Target Start/End: Original strand, 19377523 - 19377637
Alignment:
Q  49 atccgcaggaaatgtgaaattatctgcatgaaa-tgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccagactctataaaat 147  Q
    |||||||||||||||||||||||| ||| |||| |||||||||||||||  |||||| ||||||||||| |||||  |||||  |||||||||||| |||    
T  19377523 atccgcaggaaatgtgaaattatccgcaggaaaatgtgaaattattcgcaggaaagacataacattttgcgataatttttttgcccagactctatataat 19377622  T
Q  148 tcctgattctgccac 162  Q
    || ||  ||||||||    
T  19377623 tcttggctctgccac 19377637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 49 - 129
Target Start/End: Original strand, 4843432 - 4843512
Alignment:
Q  49 atccgcaggaaatgtgaaattatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaattttt 129  Q
    |||||||||||||||||||||||| ||| |||||||||||||||||||  ||||||| |||| ||||| |||||| |||||    
T  4843432 atccgcaggaaatgtgaaattatccgcaggaaatgtgaaattattcgcaggaaagaagtaacgttttgcgataaatttttt 4843512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 57 - 148
Target Start/End: Complemental strand, 7873215 - 7873124
Alignment:
Q  57 gaaatgtgaaattatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccagactctataaaatt 148  Q
    |||||||||||||||| ||| |||||||||||||||| ||| ||| ||| |||||||||| |||||  |||||  |||||||||||||||||    
T  7873215 gaaatgtgaaattatccgcaggaaatgtgaaattattagcgggaaggaagtaacattttgcgataatttttttgcccagactctataaaatt 7873124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 53 - 148
Target Start/End: Complemental strand, 5991419 - 5991324
Alignment:
Q  53 gcaggaaatgtgaaattatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccagactctataaaatt 148  Q
    |||||||||||||||||||| ||| ||||||| |||||||||||  ||| ||| |||||||||| |||||  |||||  |||| ||||||||||||    
T  5991419 gcaggaaatgtgaaattatccgcaagaaatgtaaaattattcgcaggaaggaagtaacattttgcgataatttttttgcccaggctctataaaatt 5991324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 50 - 148
Target Start/End: Complemental strand, 22206688 - 22206590
Alignment:
Q  50 tccgcaggaaatgtgaaattatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccagactctataaaatt 148  Q
    |||||||||||||||| |||||| ||| |||||||||||||||||||  ||| ||| |||||||||| |||||  || ||  |||| ||||||||||||    
T  22206688 tccgcaggaaatgtgagattatccgcaggaaatgtgaaattattcgcaggaaggaagtaacattttgcgataattttcttgcccaggctctataaaatt 22206590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 50 - 148
Target Start/End: Original strand, 22228051 - 22228149
Alignment:
Q  50 tccgcaggaaatgtgaaattatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccagactctataaaatt 148  Q
    |||||||||||||||| |||||| ||| |||||||||||||||||||  ||| ||| |||||||||| |||||  || ||  |||| ||||||||||||    
T  22228051 tccgcaggaaatgtgagattatccgcaggaaatgtgaaattattcgcaggaaggaagtaacattttgcgataattttcttgcccaggctctataaaatt 22228149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 78 - 162
Target Start/End: Complemental strand, 26722933 - 26722849
Alignment:
Q  78 gaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccagactctataaaattcctgattctgccac 162  Q
    |||||||||||||||||||  ||| ||| |||| ||||| |||||| |||||  |||  ||||||||||||||||| ||||||||    
T  26722933 gaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttgcccaagctctataaaattcctgactctgccac 26722849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 49 - 152
Target Start/End: Complemental strand, 38991180 - 38991077
Alignment:
Q  49 atccgcaggaaatgtgaaattatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccagactctataaaatt 148  Q
    |||||||| ||||||||||||||  | | ||||| |||||||||||||  |||  | ||||| ||||| |||||  ||||| ||| ||||||||||||||    
T  38991180 atccgcagaaaatgtgaaattattcgtaggaaatatgaaattattcgcaggaagaagataacgttttgcgataacttttttgtccggactctataaaatt 38991081  T
Q  149 cctg 152  Q
    ||||    
T  38991080 cctg 38991077  T

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Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 37 - 71
Target Start/End: Original strand, 3012443 - 3012477
Alignment:
Q  37 caggaaagatatatccgcaggaaatgtgaaattat 71  Q
    |||||||||||||||||||||||||||||||||||    
T  3012443 caggaaagatatatccgcaggaaatgtgaaattat 3012477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 48 - 152
Target Start/End: Complemental strand, 28694007 - 28693903
Alignment:
Q  48 tatccgcaggaaatgtgaaattatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccagactctataaaat 147  Q
    |||||||||||  |||||||||||| | | |||||||||||||||||||   || ||| |||  ||||| |||||  |||||  |||| |||||||||||    
T  28694007 tatccgcaggatttgtgaaattatccggaggaaatgtgaaattattcgcagaaaggaagtaaagttttgcgataatttttttgcccaggctctataaaat 28693908  T
Q  148 tcctg 152  Q
    |||||    
T  28693907 tcctg 28693903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 187 - 229
Target Start/End: Original strand, 21626865 - 21626908
Alignment:
Q  187 aaaatcat-cacgtgtaacatatttattatttataaacttacat 229  Q
    |||||||| ||| |||||||||||||||||||||||||||||||    
T  21626865 aaaatcatacacatgtaacatatttattatttataaacttacat 21626908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 76
Target Start/End: Complemental strand, 38128975 - 38128936
Alignment:
Q  37 caggaaagatatatccgcaggaaatgtgaaattatctgca 76  Q
    ||||||||||||||  ||||||||||||||||||||||||    
T  38128975 caggaaagatatatgtgcaggaaatgtgaaattatctgca 38128936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 814990 - 814933
Alignment:
Q  16 atactttagaattttaagatc--caggaaagatatatccgcaggaaatgtgaaattat 71  Q
    |||| ||||||||||| ||||  || ||||||||||||||||| ||||||||||||||    
T  814990 ataccttagaattttaggatctgcacgaaagatatatccgcagaaaatgtgaaattat 814933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 156
Target Start/End: Complemental strand, 42439535 - 42439458
Alignment:
Q  79 aaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccagactctataaaattcctgattc 156  Q
    |||||||||||||||||    |||||| |||| ||||| |||||| |||||  |||||| |||||||||| |||||||    
T  42439535 aaatgtgaaattattcgtagaaaagaagtaacgttttgcgataaattttttgcccagaccctataaaatttctgattc 42439458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 8e-31; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 40 - 152
Target Start/End: Complemental strand, 23663771 - 23663659
Alignment:
Q  40 gaaagatatatccgcaggaaatgtgaaattatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccagactc 139  Q
    |||||||||||||| || ||||||||||||||||||| |||||||||||||||||||  ||| ||| |||| ||||| |||||| ||||||||||| |||    
T  23663771 gaaagatatatccgtagaaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaatgaagtaacgttttgcgataaattttttatccaggctc 23663672  T
Q  140 tataaaattcctg 152  Q
    |||||||||||||    
T  23663671 tataaaattcctg 23663659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 37 - 148
Target Start/End: Original strand, 9696156 - 9696267
Alignment:
Q  37 caggaaagatatatccgcaggaaatgtgaaattatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccaga 136  Q
    ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||  ||| ||| |||| ||||| |||||| |||||  |||||    
T  9696156 caggaaagatatatccgtaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttgcccaga 9696255  T
Q  137 ctctataaaatt 148  Q
    ||||||||||||    
T  9696256 ctctataaaatt 9696267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 40 - 152
Target Start/End: Original strand, 2941326 - 2941438
Alignment:
Q  40 gaaagatatatccgcaggaaatgtgaaattatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccagactc 139  Q
    |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||   ||| ||| |||| ||||| |||||| |||||  |||| |||    
T  2941326 gaaagatatatccgtaggaaatgtgaaattatctgcaggaaatgtgaaattattcgtaggaaggaagtaacgttttgcgataaattttttgcccaggctc 2941425  T
Q  140 tataaaattcctg 152  Q
    |||||||||||||    
T  2941426 tataaaattcctg 2941438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 37 - 162
Target Start/End: Original strand, 15122144 - 15122269
Alignment:
Q  37 caggaaagatatatccgcaggaaatgtgaaattatctgcatgaaatgtgaaattattcgcgtgaaagaaa-taacattttgtgataaaatttttatccag 135  Q
    ||||||||||||||||| ||||||||| ||||||||||||  ||||||||||||||||||  |||||||| |||| ||||| |||||| |||||  |||     
T  15122144 caggaaagatatatccgtaggaaatgtaaaattatctgcagaaaatgtgaaattattcgc-agaaagaaagtaacgttttgcgataaattttttgcccaa 15122242  T
Q  136 actctataaaattcctgattctgccac 162  Q
    |||||||||||||||||| || |||||    
T  15122243 actctataaaattcctgactccgccac 15122269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 37 - 164
Target Start/End: Original strand, 15529047 - 15529174
Alignment:
Q  37 caggaaagatatatccgcaggaaatgtgaaattatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccaga 136  Q
    ||||||||||||||| | |||||||||||| ||||||||| ||||||||||||||||||   ||||||| |||  ||||| |||||| |||||  | ||     
T  15529047 caggaaagatatatctgtaggaaatgtgaatttatctgcaggaaatgtgaaattattcgtaggaaagaagtaatgttttgcgataaattttttgcctagg 15529146  T
Q  137 ctctataaaattcctgattctgccaccg 164  Q
    ||||||||||||||||| || |||||||    
T  15529147 ctctataaaattcctgactccgccaccg 15529174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 50 - 162
Target Start/End: Complemental strand, 10397811 - 10397699
Alignment:
Q  50 tccgcaggaaatgtgaaattatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccagactctataaaattc 149  Q
    |||| ||||||||||||||||||||   |||||||||||||||||||  ||| ||| |||| ||||| |||||| |||||  ||||||||||||||||||    
T  10397811 tccgtaggaaatgtgaaattatctgttggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttgcccagactctataaaattc 10397712  T
Q  150 ctgattctgccac 162  Q
    ||| ||| |||||    
T  10397711 ctggttccgccac 10397699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 37 - 149
Target Start/End: Complemental strand, 34249028 - 34248916
Alignment:
Q  37 caggaaagatatatccgcaggaaatgtgaaattatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccaga 136  Q
    ||||||||||||||||| || |||| |||||||||||||| ||||||||||||||| |||  ||| ||| |||| ||||| |||||| |||||  ||||     
T  34249028 caggaaagatatatccgtagaaaatatgaaattatctgcaggaaatgtgaaattatccgcaggaaggaagtaacgttttgcgataaattttttgcccagg 34248929  T
Q  137 ctctataaaattc 149  Q
    |||||||||||||    
T  34248928 ctctataaaattc 34248916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 37 - 152
Target Start/End: Complemental strand, 2836182 - 2836067
Alignment:
Q  37 caggaaagatatatccgcaggaaatgtgaaattatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccaga 136  Q
    |||||||  ||||||  ||||||||||||||||||||||| |||||||||||||||||||  ||| ||| |||| | |||| ||||| |||||   ||||    
T  2836182 caggaaaagtatatcgacaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgtcttgtaataaattttttgctcaga 2836083  T
Q  137 ctctataaaattcctg 152  Q
    ||||||||||||||||    
T  2836082 ctctataaaattcctg 2836067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 40 - 148
Target Start/End: Complemental strand, 9046927 - 9046819
Alignment:
Q  40 gaaagatatatccgcaggaaatgtgaaattatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccagactc 139  Q
    |||| ||||||| | |||||||||||||||||||||| |||||||||||||||||    ||| |||||||| ||||  |||||| |||||  ||| ||||    
T  9046927 gaaatatatatctgtaggaaatgtgaaattatctgcaggaaatgtgaaattattcaaaggaaggaaataacgttttccgataaattttttgcccaaactc 9046828  T
Q  140 tataaaatt 148  Q
    |||||||||    
T  9046827 tataaaatt 9046819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 78 - 166
Target Start/End: Complemental strand, 1781017 - 1780929
Alignment:
Q  78 gaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccagactctataaaattcctgattctgccaccgac 166  Q
    |||||||||||||||||||  ||| ||| |||| ||||| |||||| ||| |  |||||||||||||||||||||  ||||||||||||    
T  1781017 gaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttatgcccagactctataaaattcctggctctgccaccgac 1780929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 49 - 96
Target Start/End: Original strand, 34188911 - 34188958
Alignment:
Q  49 atccgcaggaaatgtgaaattatctgcatgaaatgtgaaattattcgc 96  Q
    |||||||||||||||||||||||| ||| |||||||||||||||||||    
T  34188911 atccgcaggaaatgtgaaattatccgcaggaaatgtgaaattattcgc 34188958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 55 - 153
Target Start/End: Complemental strand, 14938919 - 14938821
Alignment:
Q  55 aggaaatgtgaaattatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccagactctataaaattcctga 153  Q
    |||||||||||||||||||||| ||||||||||||||||| |  |||  || |||||||||| |||||  |||||  |||  |||||||||||| ||||    
T  14938919 aggaaatgtgaaattatctgcaggaaatgtgaaattattcccaggaagaaagtaacattttgcgataatttttttgcccaagctctataaaatttctga 14938821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 50 - 148
Target Start/End: Complemental strand, 28614406 - 28614308
Alignment:
Q  50 tccgcaggaaatgtgaaattatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccagactctataaaatt 148  Q
    |||| |||||||||||||||||| |||  ||||||||||||||||||  ||| ||| |||||||||| |||||  |||||   ||| ||||||||||||    
T  28614406 tccgtaggaaatgtgaaattatcagcagaaaatgtgaaattattcgcaggaaggaagtaacattttgcgataatttttttgcacaggctctataaaatt 28614308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 37 - 149
Target Start/End: Complemental strand, 31188327 - 31188215
Alignment:
Q  37 caggaaagatatatccgcaggaaatgtgaaattatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccaga 136  Q
    |||||||||||||||| ||| |||| |||||||||| | |  |||||||||||||||| |  ||| ||| |||| ||||| |||||  |||||  ||||     
T  31188327 caggaaagatatatcctcagaaaatttgaaattatccgtagaaaatgtgaaattattcacaggaaggaagtaacgttttgcgataatttttttgcccagg 31188228  T
Q  137 ctctataaaattc 149  Q
    |||||||||||||    
T  31188227 ctctataaaattc 31188215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 116
Target Start/End: Original strand, 2960794 - 2960852
Alignment:
Q  58 aaatgtgaaattatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttg 116  Q
    ||||||||||||||| ||| |||||||||||||||||||  ||| ||| ||||||||||    
T  2960794 aaatgtgaaattatccgcaggaaatgtgaaattattcgcaagaaggaagtaacattttg 2960852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 96
Target Start/End: Complemental strand, 31200172 - 31200113
Alignment:
Q  37 caggaaagatatatccgcaggaaatgtgaaattatctgcatgaaatgtgaaattattcgc 96  Q
    |||| |||||||||| |||||||||||||||||||| |    ||||||||||||||||||    
T  31200172 caggtaagatatatctgcaggaaatgtgaaattatccgtggaaaatgtgaaattattcgc 31200113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 8e-31; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 37 - 153
Target Start/End: Complemental strand, 33179107 - 33178991
Alignment:
Q  37 caggaaagatatatccgcaggaaatgtgaaattatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccaga 136  Q
    |||||||||||||||||||| |||||||||||||||||||  ||||||||||||||||||  ||| ||| |||| ||||| |||||| |||||  |||||    
T  33179107 caggaaagatatatccgcagaaaatgtgaaattatctgcagaaaatgtgaaattattcgcaggaatgaagtaacgttttgcgataaattttttgcccaga 33179008  T
Q  137 ctctataaaattcctga 153  Q
    |||||||||||||||||    
T  33179007 ctctataaaattcctga 33178991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 37 - 152
Target Start/End: Original strand, 7501062 - 7501177
Alignment:
Q  37 caggaaagatatatccgcaggaaatgtgaaattatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccaga 136  Q
    ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||  |||  || |||| ||||| |||||| |||||||| ||     
T  7501062 caggaaagatatatccgtaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaagtaagtaacgttttgcgataaattttttatcgagg 7501161  T
Q  137 ctctataaaattcctg 152  Q
    ||||||||||||||||    
T  7501162 ctctataaaattcctg 7501177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 37 - 152
Target Start/End: Original strand, 14461171 - 14461286
Alignment:
Q  37 caggaaagatatatccgcaggaaatgtgaaattatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccaga 136  Q
    ||||||||||||||||| |||||||||||| ||||||||| ||||||| ||||||||||   ||| ||| |||| |||||||||||| |||||  ||||     
T  14461171 caggaaagatatatccgtaggaaatgtgaatttatctgcaggaaatgtaaaattattcgtaggaaggaagtaacgttttgtgataaattttttgcccagg 14461270  T
Q  137 ctctataaaattcctg 152  Q
    ||||||||||||||||    
T  14461271 ctctataaaattcctg 14461286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 39 - 152
Target Start/End: Original strand, 28311385 - 28311498
Alignment:
Q  39 ggaaagatatatccgcaggaaatgtgaaattatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccagact 138  Q
    ||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||   ||| ||| |||  ||||| |||||| |||||  |||||||    
T  28311385 ggaaagatatatccgtaggaaatgtgaatttatctgcaggaaatgtgaaattattcgtaggaaggaagtaatgttttgcgataaattttttgcccagact 28311484  T
Q  139 ctataaaattcctg 152  Q
    ||||||||||||||    
T  28311485 ctataaaattcctg 28311498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 49 - 162
Target Start/End: Complemental strand, 41218358 - 41218245
Alignment:
Q  49 atccgcaggaaatgtgaaattatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccagactctataaaatt 148  Q
    ||||||||||||||| |||||||||||| |||||||||||||||||||  ||| ||| |||| ||||| |||||| |||||  | |||||||||||||||    
T  41218358 atccgcaggaaatgtaaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttgcctagactctataaaatt 41218259  T
Q  149 cctgattctgccac 162  Q
    ||||| || |||||    
T  41218258 cctgactccgccac 41218245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 37 - 162
Target Start/End: Complemental strand, 43700208 - 43700083
Alignment:
Q  37 caggaaagatatatccgcaggaaatgtgaaattatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccaga 136  Q
    |||||||||||||||||  ||||||||||||||||||||| |||||||||||||||||||   |||||| |||| ||||| |||| | |||||| |||      
T  43700208 caggaaagatatatccgttggaaatgtgaaattatctgcaggaaatgtgaaattattcgcagaaaagaagtaacgttttgcgatatattttttacccaag 43700109  T
Q  137 ctctataaaattcctgattctgccac 162  Q
    |||||||||||| |||| || |||||    
T  43700108 ctctataaaatttctgactccgccac 43700083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 40 - 152
Target Start/End: Original strand, 44047693 - 44047804
Alignment:
Q  40 gaaagatatatccgcaggaaatgtgaaattatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccagactc 139  Q
    |||||||||||||| |||||||||||| ||||||||| |||||||||||||||| |   ||||||| |||| ||||| |||||| ||||| |||||||||    
T  44047693 gaaagatatatccgtaggaaatgtgaatttatctgcaggaaatgtgaaattatttgtaggaaagaagtaacgttttgcgataaattttttgtccagactc 44047792  T
Q  140 tataaaattcctg 152  Q
    || ||||||||||    
T  44047793 ta-aaaattcctg 44047804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 37 - 152
Target Start/End: Original strand, 53652004 - 53652119
Alignment:
Q  37 caggaaagatatatccgcaggaaatgtgaaattatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccaga 136  Q
    ||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||   |||  |  |||  ||||| |||||| ||||| ||||||    
T  53652004 caggaaagatatatccgtaggaaatgtgaatttatctgcaggaaatgtgaaattattcgtaggaagaacgtaatgttttgcgataaattttttgtccaga 53652103  T
Q  137 ctctataaaattcctg 152  Q
    ||||||||||||||||    
T  53652104 ctctataaaattcctg 53652119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 37 - 152
Target Start/End: Original strand, 12909934 - 12910047
Alignment:
Q  37 caggaaagatatatccgcaggaaatgtgaaattatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccaga 136  Q
    ||||||||||||||||| |||||||||||| |||||| || ||||||||||||||||  || ||| ||| ||||  |||| |||||| |||||  ||||     
T  12909934 caggaaagatatatccgtaggaaatgtgaatttatctacaggaaatgtgaaattatt--cgggaaggaagtaacgatttgcgataaattttttgcccagg 12910031  T
Q  137 ctctataaaattcctg 152  Q
    ||||||||||||||||    
T  12910032 ctctataaaattcctg 12910047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 78 - 152
Target Start/End: Complemental strand, 26371016 - 26370942
Alignment:
Q  78 gaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccagactctataaaattcctg 152  Q
    |||||||||||||||||||  ||| ||| |||| ||||| |||||| |||||  |||||||||||||||||||||    
T  26371016 gaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttgcccagactctataaaattcctg 26370942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 152
Target Start/End: Original strand, 37516768 - 37516842
Alignment:
Q  78 gaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccagactctataaaattcctg 152  Q
    |||||||||||||||||||  ||| ||| |||| ||||| |||||| |||||  |||| ||||||||||||||||    
T  37516768 gaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttgcccaggctctataaaattcctg 37516842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 71
Target Start/End: Complemental strand, 25391839 - 25391805
Alignment:
Q  37 caggaaagatatatccgcaggaaatgtgaaattat 71  Q
    ||||||||||||||||| |||||||||||||||||    
T  25391839 caggaaagatatatccgtaggaaatgtgaaattat 25391805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 71
Target Start/End: Complemental strand, 26371036 - 26371002
Alignment:
Q  37 caggaaagatatatccgcaggaaatgtgaaattat 71  Q
    ||||||||||||||||| |||||||||||||||||    
T  26371036 caggaaagatatatccgtaggaaatgtgaaattat 26371002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 71
Target Start/End: Original strand, 37516748 - 37516782
Alignment:
Q  37 caggaaagatatatccgcaggaaatgtgaaattat 71  Q
    ||||||||||||||||| |||||||||||||||||    
T  37516748 caggaaagatatatccgtaggaaatgtgaaattat 37516782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 37 - 152
Target Start/End: Complemental strand, 36406504 - 36406389
Alignment:
Q  37 caggaaagatatatccgcaggaaatgtgaaattatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccaga 136  Q
    ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||  ||| ||| |||| ||||| |||||| |||||  ||||     
T  36406504 caggaaagatatatccgtaggaaatgtgaaattatctgcaagaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttgcccagg 36406405  T
Q  137 ctctataaaattcctg 152  Q
    ||||||||||||||||    
T  36406404 ctctataaaattcctg 36406389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 37 - 152
Target Start/End: Original strand, 28928160 - 28928275
Alignment:
Q  37 caggaaagatatatccgcaggaaatgtgaaattatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccaga 136  Q
    ||||||||||||||| | ||||||||||||||||||||||  ||||||||||||||||||  ||| ||| |||| ||||  |||||| |||||| |||||    
T  28928160 caggaaagatatatctgtaggaaatgtgaaattatctgcagaaaatgtgaaattattcgcaggaaggaagtaactttttacgataaattttttacccaga 28928259  T
Q  137 ctctataaaattcctg 152  Q
    |||| |||||||||||    
T  28928260 ctctttaaaattcctg 28928275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 37 - 129
Target Start/End: Complemental strand, 3384034 - 3383942
Alignment:
Q  37 caggaaagatatatccgcaggaaatgtgaaattatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaattttt 129  Q
    ||||||||||||||||| |||||||||||| ||||||||| |||| |||||||||||||   ||| ||| |||| ||||| ||||||||||||    
T  3384034 caggaaagatatatccgtaggaaatgtgaatttatctgcaggaaacgtgaaattattcgtaggaaggaagtaacgttttgcgataaaattttt 3383942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 48 - 148
Target Start/End: Complemental strand, 34282864 - 34282764
Alignment:
Q  48 tatccgcaggaaatgtgaaattatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccagactctataaaat 147  Q
    |||||||| ||||||||||||||| |||| |||||||||||||||||||  ||| ||| |||| || || |||||| ||||| ||||| |||||||||||    
T  34282864 tatccgcatgaaatgtgaaattatttgcaggaaatgtgaaattattcgcaggaaggaagtaacgttgtgcgataaattttttgtccaggctctataaaat 34282765  T
Q  148 t 148  Q
    |    
T  34282764 t 34282764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 53 - 161
Target Start/End: Complemental strand, 27321861 - 27321753
Alignment:
Q  53 gcaggaaatgtgaaattatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccagactctataaaattcctg 152  Q
    |||||| |||||||||||||||||  ||||||||||||||||||  ||| ||| |||||||||| |||||  |||||  |||| |||||||||||| |||    
T  27321861 gcaggatatgtgaaattatctgcagaaaatgtgaaattattcgcaggaaggaagtaacattttgcgataatttttttgcccaggctctataaaatttctg 27321762  T
Q  153 attctgcca 161  Q
      |||||||    
T  27321761 gctctgcca 27321753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 49 - 93
Target Start/End: Complemental strand, 34282884 - 34282840
Alignment:
Q  49 atccgcaggaaatgtgaaattatctgcatgaaatgtgaaattatt 93  Q
    |||||||||||||||||||||||| ||||||||||||||||||||    
T  34282884 atccgcaggaaatgtgaaattatccgcatgaaatgtgaaattatt 34282840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 48 - 151
Target Start/End: Original strand, 13243242 - 13243345
Alignment:
Q  48 tatccgcaggaaatgtgaaattatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccagactctataaaat 147  Q
    |||||||||||||||||||||||||| ||  ||||||||||||||| ||  |||| || |||| ||||  |||||| |||||   ||| |||||||||||    
T  13243242 tatccgcaggaaatgtgaaattatctccacaaaatgtgaaattattggcaagaaaaaagtaacgttttacgataaattttttgctcaggctctataaaat 13243341  T
Q  148 tcct 151  Q
    ||||    
T  13243342 tcct 13243345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 40 - 90
Target Start/End: Complemental strand, 39431641 - 39431591
Alignment:
Q  40 gaaagatatatccgcaggaaatgtgaaattatctgcatgaaatgtgaaatt 90  Q
    |||||||||||||||| ||||||||||||||||| || |||||||||||||    
T  39431641 gaaagatatatccgcatgaaatgtgaaattatctacaggaaatgtgaaatt 39431591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 92
Target Start/End: Original strand, 13243222 - 13243265
Alignment:
Q  49 atccgcaggaaatgtgaaattatctgcatgaaatgtgaaattat 92  Q
    ||||||| |||||||||||||||| ||| |||||||||||||||    
T  13243222 atccgcaagaaatgtgaaattatccgcaggaaatgtgaaattat 13243265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 73 - 162
Target Start/End: Original strand, 24965148 - 24965237
Alignment:
Q  73 tgcatgaaatgtgaaattattcgcgtgaaagaaa-taacattttgtgataaaatttttatccagactctataaaattcctgattctgccac 162  Q
    |||| |||||||||||||||||||  |||||||| |||  ||||| |||||| |||||  |||| ||||||||||||||||  ||||||||    
T  24965148 tgcaggaaatgtgaaattattcgca-gaaagaaagtaaggttttgcgataaattttttgcccaggctctataaaattcctggctctgccac 24965237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 62 - 152
Target Start/End: Complemental strand, 35384355 - 35384265
Alignment:
Q  62 gtgaaattatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccagactctataaaattcctg 152  Q
    ||||||||||||| | ||||||||||||||||||   ||| ||| || | ||||| |||||| |||||  |||  ||||||||||||||||    
T  35384355 gtgaaattatctggaggaaatgtgaaattattcgtaggaaggaagtaccgttttgcgataaattttttgcccaagctctataaaattcctg 35384265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 37 - 152
Target Start/End: Original strand, 35469003 - 35469118
Alignment:
Q  37 caggaaagatatatccgcaggaaatgtgaaattatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccaga 136  Q
    ||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||  ||| ||| |||||||||| |||||| |||||  ||||     
T  35469003 caggaaagatatatccgtagaaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacattttgcgataaattttttgcccagg 35469102  T
Q  137 ctctataaaattcctg 152  Q
    ||||||||||||||||    
T  35469103 ctctataaaattcctg 35469118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 49 - 151
Target Start/End: Complemental strand, 36234558 - 36234456
Alignment:
Q  49 atccgcaggaaatgtgaaattatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccagactctataaaatt 148  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||  ||| ||| |||||||||| |||||| ||||| |||| |||||||||||||    
T  36234558 atccgcaggaaatgtgaaattatctgcaagaaatgtgaaattattcgcaagaaggaagtaacattttgcgataaattttttgtccaaactctataaaatt 36234459  T
Q  149 cct 151  Q
    |||    
T  36234458 cct 36234456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 39 - 148
Target Start/End: Original strand, 15504051 - 15504160
Alignment:
Q  39 ggaaagatatatccgcaggaaatgtgaaattatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccagact 138  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  ||| ||| |||||||||| |||||| ||||| || || ||    
T  15504051 ggaaagatatatccgcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacattttgcgataaattttttgtcgaggct 15504150  T
Q  139 ctataaaatt 148  Q
    ||||| ||||    
T  15504151 ctatataatt 15504160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 37 - 148
Target Start/End: Complemental strand, 14832826 - 14832715
Alignment:
Q  37 caggaaagatatatccgcaggaaatgtgaaattatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccaga 136  Q
    ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||  ||| ||| |||  ||||| |||||| |||||  |||||    
T  14832826 caggaaagatatatccgtaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgataaattttttgcccaga 14832727  T
Q  137 ctctataaaatt 148  Q
    ||||||||||||    
T  14832726 ctctataaaatt 14832715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 39 - 165
Target Start/End: Original strand, 6900869 - 6900995
Alignment:
Q  39 ggaaagatatatccgcaggaaatgtgaaattatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccagact 138  Q
    ||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||| |||| ||| |||||||||| |||||| ||||||  || |||    
T  6900869 ggaaagatatatccgcaagaaatgtgaaattatccgcaggaaatgtgaaattattcgcatgaaggaagtaacattttgcgataaattttttactcatact 6900968  T
Q  139 ctataaaattcctgattctgccaccga 165  Q
    |||| ||||| |||  || ||||||||    
T  6900969 ctattaaatttctgtctccgccaccga 6900995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 37 - 151
Target Start/End: Original strand, 15675413 - 15675527
Alignment:
Q  37 caggaaagatatatccgcaggaaatgtgaaattatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccaga 136  Q
    ||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||  ||| ||| |||| ||||| |||||| |||||  ||||     
T  15675413 caggaaagatatatccgaaggaaatgtgaaattatctacaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttgcccagg 15675512  T
Q  137 ctctataaaattcct 151  Q
    |||||||||||||||    
T  15675513 ctctataaaattcct 15675527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 37 - 148
Target Start/End: Original strand, 2476465 - 2476576
Alignment:
Q  37 caggaaagatatatccgcaggaaatgtgaaattatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccaga 136  Q
    ||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||   ||| ||| |||| ||||| |||||| |||||  ||||     
T  2476465 caggaaagatatatccgtaggaaatgtgaatttatctgcaggaaatgtgaaattattcgtaggaaggaagtaacgttttgcgataaattttttgcccagg 2476564  T
Q  137 ctctataaaatt 148  Q
    ||||||| ||||    
T  2476565 ctctatataatt 2476576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 37 - 152
Target Start/End: Original strand, 30249065 - 30249180
Alignment:
Q  37 caggaaagatatatccgcaggaaatgtgaaattatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccaga 136  Q
    ||||||||||||||||| ||||||||||||||||||||||  ||||||||||||||| ||  |||  ||  ||| ||||| |||||| |||||  |||||    
T  30249065 caggaaagatatatccgtaggaaatgtgaaattatctgcagaaaatgtgaaattatttgcaggaagaaagcaacgttttgcgataaattttttgcccaga 30249164  T
Q  137 ctctataaaattcctg 152  Q
    |||| |||||||||||    
T  30249165 ctctgtaaaattcctg 30249180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 50 - 148
Target Start/End: Complemental strand, 32953670 - 32953572
Alignment:
Q  50 tccgcaggaaatgtgaaattatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccagactctataaaatt 148  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||   ||| ||| |||||||||| |||||  |||||   ||| ||||||||||||    
T  32953670 tccgcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgtaggaaggaagtaacattttgcgataacttttttgcacaggctctataaaatt 32953572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 37 - 95
Target Start/End: Original strand, 34444066 - 34444124
Alignment:
Q  37 caggaaagatatatccgcaggaaatgtgaaattatctgcatgaaatgtgaaattattcg 95  Q
    ||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||    
T  34444066 caggaaagatatatccgtaggaaatgtgaatttatctgcaggaaatgtgaaattattcg 34444124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 50 - 148
Target Start/End: Complemental strand, 43228645 - 43228547
Alignment:
Q  50 tccgcaggaaatgtgaaattatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccagactctataaaatt 148  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||  ||||| | |||||||||| ||| |  |||||  |||| ||||||||||||    
T  43228645 tccgcaggaaatgtgaaattatctgcaagaaatatgaaattattcgcaggaaaggagtaacattttgcgattagttttttgcccaggctctataaaatt 43228547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 55 - 148
Target Start/End: Complemental strand, 1672484 - 1672391
Alignment:
Q  55 aggaaatgtgaaattatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccagactctataaaatt 148  Q
    ||||||||||||||||||||||  ||||||||||||||||||  ||| ||| |||||||||| |||||  |||||  |||| ||||||||||||    
T  1672484 aggaaatgtgaaattatctgcagaaaatgtgaaattattcgcaggaaggaagtaacattttgcgataatttttttgcccaggctctataaaatt 1672391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 50 - 162
Target Start/End: Original strand, 16567904 - 16568016
Alignment:
Q  50 tccgcaggaaatgtgaaattatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccagactctataaaattc 149  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||| |  ||| ||| |||||||||| |||||  |||||  |||  ||||||||||||     
T  16567904 tccgcaggaaatgtgaaattatccgcaggaaatgtgaaattattcccaggaaggaagtaacattttgcgataatttttttgcccaagctctataaaattt 16568003  T
Q  150 ctgattctgccac 162  Q
    |||| || |||||    
T  16568004 ctgactccgccac 16568016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 50 - 148
Target Start/End: Complemental strand, 7162086 - 7161988
Alignment:
Q  50 tccgcaggaaatgtgaaattatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccagactctataaaatt 148  Q
    |||||||||||||||||||||||  || |||||||||||||||| ||  ||| ||| |||||||||| |||||  |||||  |||| ||||||||||||    
T  7162086 tccgcaggaaatgtgaaattatccacaggaaatgtgaaattatttgcaggaaggaagtaacattttgcgataatttttttgcccaggctctataaaatt 7161988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 49 - 148
Target Start/End: Complemental strand, 13942755 - 13942657
Alignment:
Q  49 atccgcaggaaatgtgaaattatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccagactctataaaatt 148  Q
    |||||||||||||||||| |||||  || |||||||||||||||||||  ||| ||| |||| ||||| |||||  |||||| |||| ||||||||||||    
T  13942755 atccgcaggaaatgtgaa-ttatccacaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataatttttttacccaggctctataaaatt 13942657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 78 - 152
Target Start/End: Original strand, 33007027 - 33007101
Alignment:
Q  78 gaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccagactctataaaattcctg 152  Q
    |||||||||||||||||||  ||| ||| |||| ||||| |||||| |||||  |||||||||||||||||||||    
T  33007027 gaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttgcccagactctataaaattcctg 33007101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 78 - 152
Target Start/End: Original strand, 34846487 - 34846561
Alignment:
Q  78 gaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccagactctataaaattcctg 152  Q
    |||||||||||||||||||  ||| ||| |||| ||||| |||||| ||||| ||||| ||||||||||||||||    
T  34846487 gaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttgtccaggctctataaaattcctg 34846561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 69 - 148
Target Start/End: Original strand, 21069153 - 21069232
Alignment:
Q  69 tatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccagactctataaaatt 148  Q
    |||||||| ||||||||||||||||  |  ||| |||||||| ||||| |||||| |||||  |||||||||||||||||    
T  21069153 tatctgcaggaaatgtgaaattatttccaggaaggaaataacgttttgcgataaattttttgcccagactctataaaatt 21069232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 37 - 80
Target Start/End: Complemental strand, 39605836 - 39605793
Alignment:
Q  37 caggaaagatatatccgcaggaaatgtgaaattatctgcatgaa 80  Q
    |||||||||||||||||||||||||||| ||||||| |||||||    
T  39605836 caggaaagatatatccgcaggaaatgtgcaattatccgcatgaa 39605793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 147
Target Start/End: Complemental strand, 12267385 - 12267288
Alignment:
Q  49 atccgcaggaaatgtgaaattatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccagactctataaaat 147  Q
    |||||||||||||||||| ||||| |||  |||||||||||||||| |  ||| ||| |||| ||||| |||||| |||||  |||| |||||||||||    
T  12267385 atccgcaggaaatgtgaa-ttatccgcagaaaatgtgaaattattcacaggaaggaagtaacgttttgcgataaactttttgcccaggctctataaaat 12267288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 37 - 93
Target Start/End: Complemental strand, 17192640 - 17192585
Alignment:
Q  37 caggaaagatatatccgcaggaaatgtgaaattatctgcatgaaatgtgaaattatt 93  Q
    |||||||||||||| ||||| |||||||||||||||||||  |||| ||||||||||    
T  17192640 caggaaagatatattcgcagaaaatgtgaaattatctgca-aaaatatgaaattatt 17192585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 71
Target Start/End: Original strand, 21069142 - 21069176
Alignment:
Q  37 caggaaagatatatccgcaggaaatgtgaaattat 71  Q
    ||||||||||||||| |||||||||||||||||||    
T  21069142 caggaaagatatatctgcaggaaatgtgaaattat 21069176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 71
Target Start/End: Original strand, 33007007 - 33007041
Alignment:
Q  37 caggaaagatatatccgcaggaaatgtgaaattat 71  Q
    ||||||||||||||||| |||||||||||||||||    
T  33007007 caggaaagatatatccgtaggaaatgtgaaattat 33007041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 103 - 162
Target Start/End: Original strand, 42989662 - 42989723
Alignment:
Q  103 gaaataacattttgtg--ataaaatttttatccagactctataaaattcctgattctgccac 162  Q
    ||||||||||||| ||  ||||| ||||| ||||||||||||||||||||||| || |||||    
T  42989662 gaaataacattttttgcaataaattttttgtccagactctataaaattcctgactccgccac 42989723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 37 - 151
Target Start/End: Complemental strand, 6799900 - 6799786
Alignment:
Q  37 caggaaagatatatccgcaggaaatgtgaaattatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccaga 136  Q
    ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||  ||| ||| |||| |||||||||||||  |||  ||||     
T  6799900 caggaaagatatatccgtaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaactaacgttttgtgataaaaaatttgcccagg 6799801  T
Q  137 ctctataaaattcct 151  Q
    |||||||||||||||    
T  6799800 ctctataaaattcct 6799786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 40 - 152
Target Start/End: Complemental strand, 41114881 - 41114769
Alignment:
Q  40 gaaagatatatccgcaggaaatgtgaaattatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccagactc 139  Q
    |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |||| ||| |||| ||||| |||||| |||||  |||  |||    
T  41114881 gaaagatatatccgtaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcatgaaggaagtaacgttttgcgataaattttttgcccaagctc 41114782  T
Q  140 tataaaattcctg 152  Q
    |||||||||||||    
T  41114781 tataaaattcctg 41114769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 37 - 152
Target Start/End: Original strand, 29257467 - 29257582
Alignment:
Q  37 caggaaagatatatccgcaggaaatgtgaaattatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccaga 136  Q
    ||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||   || ||| |||| ||||| |||||| |||||  |||||    
T  29257467 caggaaagatatatccgtaggaaatgtgaacttatctgcaggaaatgtgaaattattcgcagaaaggaagtaacgttttgcgataaattttttgcccaga 29257566  T
Q  137 ctctataaaattcctg 152  Q
    ||||||||||||||||    
T  29257567 ctctataaaattcctg 29257582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 37 - 148
Target Start/End: Complemental strand, 304106 - 303995
Alignment:
Q  37 caggaaagatatatccgcaggaaatgtgaaattatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccaga 136  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    ||||| |||| ||||| |||||  |||||  ||| |    
T  304106 caggaaagatatatccgcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcagataagaagtaacgttttgcgataatttttttgcccaaa 304007  T
Q  137 ctctataaaatt 148  Q
    ||||||||||||    
T  304006 ctctataaaatt 303995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 48 - 151
Target Start/End: Original strand, 41010624 - 41010727
Alignment:
Q  48 tatccgcaggaaatgtgaaattatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccagactctataaaat 147  Q
    |||||| ||||||||||||||| |||||| |||||||||||||||||||  ||| ||| |||| ||||| |||||| ||||| |||| ||||||||||||    
T  41010624 tatccgtaggaaatgtgaaattttctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttgtccacactctataaaat 41010723  T
Q  148 tcct 151  Q
    ||||    
T  41010724 tcct 41010727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 37 - 152
Target Start/End: Original strand, 13203868 - 13203983
Alignment:
Q  37 caggaaagatatatccgcaggaaatgtgaaattatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccaga 136  Q
    ||||||||| ||||||| |||||||||||||||||||||   ||||||||||||||||||  ||| ||| |||||||||| |||||| |||||   ||      
T  13203868 caggaaagagatatccgtaggaaatgtgaaattatctgcggaaaatgtgaaattattcgctggaaggaagtaacattttgcgataaattttttgctcatg 13203967  T
Q  137 ctctataaaattcctg 152  Q
    ||||||||||||||||    
T  13203968 ctctataaaattcctg 13203983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 40 - 129
Target Start/End: Complemental strand, 18299154 - 18299065
Alignment:
Q  40 gaaagatatatccgcaggaaatgtgaaattatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaattttt 129  Q
    |||||||||||| | |||||||||||||||||||||| |||||||||||||||||||  ||| ||| |||| ||||  |||||| |||||    
T  18299154 gaaagatatatctgtaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttacgataaatttttt 18299065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 49 - 129
Target Start/End: Original strand, 17148909 - 17148989
Alignment:
Q  49 atccgcaggaaatgtgaaattatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaattttt 129  Q
    |||||||||||||||| ||||||||||| |||||||||||||||||||  ||| ||| |||| ||||| |||||| |||||    
T  17148909 atccgcaggaaatgtggaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgagataaatttttt 17148989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 37 - 152
Target Start/End: Original strand, 12000657 - 12000773
Alignment:
Q  37 caggaaagatatatccgcaggaaatgtgaaattatctgcatg-aaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccag 135  Q
    |||||||||||||||||||||||||||||||||||| ||  | |||||| |||||||||||  ||| ||  |||||||||| |||||  |||||  | ||    
T  12000657 caggaaagatatatccgcaggaaatgtgaaattatccgccggaaaatgtaaaattattcgcaggaaggacgtaacattttgcgataatttttttgcctag 12000756  T
Q  136 actctataaaattcctg 152  Q
     ||||||| ||||||||    
T  12000757 gctctatataattcctg 12000773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 38 - 128
Target Start/End: Original strand, 15651342 - 15651433
Alignment:
Q  38 aggaaagatatatccgcaggaaatgtgaaattatctgcatg-aaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttt 128  Q
    ||||||||||||||| ||||||||||||||||||| ||| | |||||| |||||||||||  ||| ||  |||||||||| |||||| ||||    
T  15651342 aggaaagatatatccccaggaaatgtgaaattatccgcaggaaaatgtaaaattattcgcaggaaggacgtaacattttgcgataaattttt 15651433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 78 - 162
Target Start/End: Original strand, 2475948 - 2476032
Alignment:
Q  78 gaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccagactctataaaattcctgattctgccac 162  Q
    |||||||||||||||||||  ||| ||| |||| ||||| |||||  |||||  |||| ||||||||||||||||| ||||||||    
T  2475948 gaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataatttttttgcccaggctctataaaattcctgactctgccac 2476032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 78 - 153
Target Start/End: Complemental strand, 33909320 - 33909245
Alignment:
Q  78 gaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccagactctataaaattcctga 153  Q
    |||||||||||||||| || |||| ||  |||||||||| |||||| |||||  ||||||||||||||||| ||||    
T  33909320 gaaatgtgaaattatttgcatgaaggatgtaacattttgcgataaagtttttgcccagactctataaaatttctga 33909245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 48 - 93
Target Start/End: Original strand, 25563084 - 25563129
Alignment:
Q  48 tatccgcaggaaatgtgaaattatctgcatgaaatgtgaaattatt 93  Q
    ||||| ||||||||||||||||||||||| ||||| ||||||||||    
T  25563084 tatccccaggaaatgtgaaattatctgcaggaaatatgaaattatt 25563129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 266
Target Start/End: Original strand, 11816397 - 11816459
Alignment:
Q  203 acatatttattatttataaacttacatgaaaaaacgtaaatatttgtcagtgatgtataaaaaa 266  Q
    |||||||||||||||||||| ||| || ||||||  ||||||||| |||||||| |||||||||    
T  11816397 acatatttattatttataaatttatat-aaaaaatataaatatttatcagtgatatataaaaaa 11816459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 71
Target Start/End: Original strand, 2475928 - 2475962
Alignment:
Q  37 caggaaagatatatccgcaggaaatgtgaaattat 71  Q
    |||||||||||||| ||||||||||||||||||||    
T  2475928 caggaaagatatattcgcaggaaatgtgaaattat 2475962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 71
Target Start/End: Original strand, 17249456 - 17249486
Alignment:
Q  41 aaagatatatccgcaggaaatgtgaaattat 71  Q
    |||||||||||||||||||||||||||||||    
T  17249456 aaagatatatccgcaggaaatgtgaaattat 17249486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 152
Target Start/End: Complemental strand, 22572695 - 22572621
Alignment:
Q  78 gaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccagactctataaaattcctg 152  Q
    |||||||||||||||||||  |||  || |||| ||||| |||||| ||||| ||||| || |||||||||||||    
T  22572695 gaaatgtgaaattattcgcaggaagaaagtaacgttttgcgataaattttttgtccaggctttataaaattcctg 22572621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 162
Target Start/End: Original strand, 17249463 - 17249556
Alignment:
Q  69 tatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccagactctataaaattcctgattctgccac 162  Q
    |||| ||| |||||||||||||||||||  |||  || |||| |||||  |||||  ||||  |||||||||||||||||||||| || |||||    
T  17249463 tatccgcaggaaatgtgaaattattcgcaggaagaaagtaacgttttgctataaatattttgcccagactctataaaattcctgactccgccac 17249556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 90
Target Start/End: Original strand, 41010604 - 41010645
Alignment:
Q  49 atccgcaggaaatgtgaaattatctgcatgaaatgtgaaatt 90  Q
    |||||||||||||||||||||||| | | |||||||||||||    
T  41010604 atccgcaggaaatgtgaaattatccgtaggaaatgtgaaatt 41010645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0618 (Bit Score: 64; Significance: 8e-28; HSPs: 1)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 37 - 152
Target Start/End: Original strand, 1796 - 1911
Alignment:
Q  37 caggaaagatatatccgcaggaaatgtgaaattatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccaga 136  Q
    ||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||   || ||| |||| ||||| |||||| |||||  |||||    
T  1796 caggaaagatatatccgtaggaaatgtgaacttatctgcaggaaatgtgaaattattcgcagaaaggaagtaacgttttgcgataaattttttgcccaga 1895  T
Q  137 ctctataaaattcctg 152  Q
    ||||||||||||||||    
T  1896 ctctataaaattcctg 1911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 37 - 152
Target Start/End: Original strand, 4552286 - 4552401
Alignment:
Q  37 caggaaagatatatccgcaggaaatgtgaaattatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccaga 136  Q
    ||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||| |   ||| ||| |||| ||||| |||||| |||||  |||||    
T  4552286 caggaaagatatatccgtaggaaatgtgaatttatctgcaggaaatgtgaaattatttgtaggaaggaagtaacgttttgcgataaattttttgcccaga 4552385  T
Q  137 ctctataaaattcctg 152  Q
    ||||||||||||||||    
T  4552386 ctctataaaattcctg 4552401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 37 - 152
Target Start/End: Original strand, 10715757 - 10715872
Alignment:
Q  37 caggaaagatatatccgcaggaaatgtgaaattatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccaga 136  Q
    ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||  ||| ||| |||  ||||| |||||| |||||  ||||     
T  10715757 caggaaagatatatccgtaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgataaattttttgcccagg 10715856  T
Q  137 ctctataaaattcctg 152  Q
    ||||||||||| ||||    
T  10715857 ctctataaaatacctg 10715872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 37 - 152
Target Start/End: Original strand, 10929527 - 10929642
Alignment:
Q  37 caggaaagatatatccgcaggaaatgtgaaattatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccaga 136  Q
    ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||  ||| ||| |||  ||||| |||||| |||||  ||||     
T  10929527 caggaaagatatatccgtaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgataaattttttgcccagg 10929626  T
Q  137 ctctataaaattcctg 152  Q
    ||||||||||| ||||    
T  10929627 ctctataaaatacctg 10929642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 37 - 162
Target Start/End: Original strand, 32005984 - 32006109
Alignment:
Q  37 caggaaagatatatccgcaggaaatgtgaaattatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccaga 136  Q
    ||||||||||||||||| |||||||||||| |||| |||| ||||||||||||||||||   ||| ||| |||| ||||| |||||| |||||  |||||    
T  32005984 caggaaagatatatccgtaggaaatgtgaatttatttgcaggaaatgtgaaattattcgtaggaaggaagtaacgttttgcgataaattttttgcccaga 32006083  T
Q  137 ctctataaaattcctgattctgccac 162  Q
    ||||||||||||| ||| || |||||    
T  32006084 ctctataaaattcatgactccgccac 32006109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 37 - 152
Target Start/End: Original strand, 46645704 - 46645819
Alignment:
Q  37 caggaaagatatatccgcaggaaatgtgaaattatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccaga 136  Q
    ||||||||||||||||| || |||| ||||||||| | || |||||||||||||||||||  ||| ||| |||| ||||| |||||| |||||  |||||    
T  46645704 caggaaagatatatccgtagaaaatatgaaattatatacaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaatttttttcccaga 46645803  T
Q  137 ctctataaaattcctg 152  Q
    ||||||||||||||||    
T  46645804 ctctataaaattcctg 46645819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 37 - 151
Target Start/End: Original strand, 4728659 - 4728773
Alignment:
Q  37 caggaaagatatatccgcaggaaatgtgaaattatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccaga 136  Q
    ||||||||||||||| | ||||||||||||||||||||||  ||||||||||||||| ||  ||| ||| |||| ||||| |||||| |||||  ||||     
T  4728659 caggaaagatatatctgtaggaaatgtgaaattatctgcagaaaatgtgaaattatttgcaggaaggaagtaacgttttgcgataaattttttgcccagg 4728758  T
Q  137 ctctataaaattcct 151  Q
    |||||||||||||||    
T  4728759 ctctataaaattcct 4728773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 55 - 148
Target Start/End: Complemental strand, 43003181 - 43003088
Alignment:
Q  55 aggaaatgtgaaattatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccagactctataaaatt 148  Q
    |||||||||||||||||||||| |||||||||||||||||||  ||||||| |||| || ||  ||||| ||||| ||||||||||||||||||    
T  43003181 aggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaagaagtaacgttctgcaataaattttttgtccagactctataaaatt 43003088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 37 - 152
Target Start/End: Complemental strand, 2017452 - 2017337
Alignment:
Q  37 caggaaagatatatccgcaggaaatgtgaaattatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccaga 136  Q
    ||||||||||||||||| |||||||||||| ||||||| | ||||||||||||||||||   ||| ||| |||| ||||| |||||| |||||  ||||     
T  2017452 caggaaagatatatccgtaggaaatgtgaatttatctgtaggaaatgtgaaattattcgtaggaaggaagtaacgttttgcgataaattttttgcccagg 2017353  T
Q  137 ctctataaaattcctg 152  Q
    || |||||||||||||    
T  2017352 ctttataaaattcctg 2017337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 49 - 152
Target Start/End: Original strand, 52373867 - 52373970
Alignment:
Q  49 atccgcaggaaatgtgaaattatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccagactctataaaatt 148  Q
    ||||||| |||||||||||||||| ||| |||||||||||||||||||  ||| ||| |||| ||||| |||||| |||||   ||||||||||||||||    
T  52373867 atccgcatgaaatgtgaaattatccgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttgcacagactctataaaatt 52373966  T
Q  149 cctg 152  Q
    ||||    
T  52373967 cctg 52373970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 50 - 162
Target Start/End: Original strand, 9003669 - 9003781
Alignment:
Q  50 tccgcaggaaatgtgaaattatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccagactctataaaattc 149  Q
    |||||||||||||||||||||||   | |||||||||||||||||||  ||| ||| |||||||||| |||||  ||||| ||||| ||||||||||||     
T  9003669 tccgcaggaaatgtgaaattatccataggaaatgtgaaattattcgcaagaaggaagtaacattttgcgataatttttttgtccaggctctataaaattt 9003768  T
Q  150 ctgattctgccac 162  Q
    |||| || |||||    
T  9003769 ctgactccgccac 9003781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 37 - 148
Target Start/End: Original strand, 40969325 - 40969436
Alignment:
Q  37 caggaaagatatatccgcaggaaatgtgaaattatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccaga 136  Q
    ||||||||||||||||| ||||||||||||||||||||||  |||| |||||||||||||   || ||| |||| ||||| |||||| |||||  |||      
T  40969325 caggaaagatatatccgtaggaaatgtgaaattatctgcagaaaatatgaaattattcgcagaaaggaagtaacgttttgcgataaattttttgcccaag 40969424  T
Q  137 ctctataaaatt 148  Q
    ||||||||||||    
T  40969425 ctctataaaatt 40969436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 37 - 152
Target Start/End: Complemental strand, 2521913 - 2521798
Alignment:
Q  37 caggaaagatatatccgcaggaaatgtgaaattatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccaga 136  Q
    ||||||||| |||||||||| |||||||| |||||| ||| |||||||||||||||||||  ||| ||| |||| ||||  |||||| |||||  |||      
T  2521913 caggaaagacatatccgcagaaaatgtgatattatccgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttacgataaattttttgcccatg 2521814  T
Q  137 ctctataaaattcctg 152  Q
     |||||||||||||||    
T  2521813 ttctataaaattcctg 2521798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 53 - 141
Target Start/End: Original strand, 50099987 - 50100075
Alignment:
Q  53 gcaggaaatgtgaaattatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccagactcta 141  Q
    |||||||||||||||||||| ||| ||||||||||||||||||   ||| ||| |||| ||||| |||||| |||||| ||| ||||||    
T  50099987 gcaggaaatgtgaaattatccgcaggaaatgtgaaattattcgtaggaaggaagtaacgttttgcgataaattttttacccaaactcta 50100075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 37 - 149
Target Start/End: Original strand, 2576273 - 2576385
Alignment:
Q  37 caggaaagatatatccgcaggaaatgtgaaattatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccaga 136  Q
    ||||||| ||||||||| ||||||||| ||||||||||||  |||| |||||||| ||||   || ||| |||| ||||| |||||  |||||  |||||    
T  2576273 caggaaatatatatccgtaggaaatgtaaaattatctgcagaaaatatgaaattaatcgcagaaaggaagtaacgttttgcgataatttttttgcccaga 2576372  T
Q  137 ctctataaaattc 149  Q
    || ||||||||||    
T  2576373 ctttataaaattc 2576385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 44 - 95
Target Start/End: Original strand, 1585777 - 1585828
Alignment:
Q  44 gatatatccgcaggaaatgtgaaattatctgcatgaaatgtgaaattattcg 95  Q
    |||||||||| ||||||||| || ||||||||| ||||||||||||||||||    
T  1585777 gatatatccgtaggaaatgtaaatttatctgcaggaaatgtgaaattattcg 1585828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 152
Target Start/End: Original strand, 10058658 - 10058732
Alignment:
Q  78 gaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccagactctataaaattcctg 152  Q
    |||||||||||||||||||  ||| ||| |||| ||||| |||||| |||||  |||| ||||||||||||||||    
T  10058658 gaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttgcccaggctctataaaattcctg 10058732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 143
Target Start/End: Original strand, 49745168 - 49745263
Alignment:
Q  49 atccgcaggaaatgtgaaattatctgca-tgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccagactctata 143  Q
    |||||||||||||||||||||||| |||   |||||| |||||||||||  ||| ||  |||||||||  |||||| |||||  ||||||||||||    
T  49745168 atccgcaggaaatgtgaaattatccgcagaaaaatgtaaaattattcgcaggaaggacgtaacattttacgataaattttttccccagactctata 49745263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 71
Target Start/End: Original strand, 10058638 - 10058672
Alignment:
Q  37 caggaaagatatatccgcaggaaatgtgaaattat 71  Q
    ||||||||||||||||| |||||||||||||||||    
T  10058638 caggaaagatatatccgtaggaaatgtgaaattat 10058672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 71
Target Start/End: Original strand, 25237710 - 25237744
Alignment:
Q  37 caggaaagatatatccgcaggaaatgtgaaattat 71  Q
    |||||||||| ||||||||||||||||||||||||    
T  25237710 caggaaagatgtatccgcaggaaatgtgaaattat 25237744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 152
Target Start/End: Complemental strand, 41972415 - 41972342
Alignment:
Q  79 aaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccagactctataaaattcctg 152  Q
    ||||||||||||||||||  ||| ||| |||| ||||| |||||| |||||  ||||| | |||||||||||||    
T  41972415 aaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttgaccagattttataaaattcctg 41972342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 37 - 152
Target Start/End: Original strand, 25007564 - 25007679
Alignment:
Q  37 caggaaagatatatccgcaggaaatgtgaaattatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccaga 136  Q
    ||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||   ||| ||| |||| ||||| |||||| |||||  ||||     
T  25007564 caggaaagatatatccgtaggaaatgtgaatttatctgcaggaaatgtgaaattattcgtaggaaggaagtaacgttttgcgataaattttttgcccagg 25007663  T
Q  137 ctctataaaattcctg 152  Q
    ||||||||||||||||    
T  25007664 ctctataaaattcctg 25007679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 37 - 152
Target Start/End: Complemental strand, 37154005 - 37153890
Alignment:
Q  37 caggaaagatatatccgcaggaaatgtgaaattatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccaga 136  Q
    ||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||   ||| ||| |||| ||||| |||||| |||||  ||||     
T  37154005 caggaaagatatatccgtaggaaatgtgaatttatctgcaggaaatgtgaaattattcgtaggaaggaagtaacgttttgcgataaattttttgcccagg 37153906  T
Q  137 ctctataaaattcctg 152  Q
    ||||||||||||||||    
T  37153905 ctctataaaattcctg 37153890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 37 - 148
Target Start/End: Original strand, 14727430 - 14727541
Alignment:
Q  37 caggaaagatatatccgcaggaaatgtgaaattatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccaga 136  Q
    ||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||  ||| ||| |||| ||||| |||||  |||||  ||||     
T  14727430 caggaaagatatatctgtaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataatttttttgcccagg 14727529  T
Q  137 ctctataaaatt 148  Q
    ||||||||||||    
T  14727530 ctctataaaatt 14727541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 36 - 152
Target Start/End: Complemental strand, 27584029 - 27583917
Alignment:
Q  36 ccaggaaagatatatccgcaggaaatgtgaaattatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccag 135  Q
    |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||    | ||| |||| ||||| |||||| |||||   |||    
T  27584029 ccaggaaagatatatccgtaggaaatgtgaaattatctgcaggaaatgtgaaattattcgc----aggaagtaacgttttgcgataaattttttgctcag 27583934  T
Q  136 actctataaaattcctg 152  Q
     ||||||||||||||||    
T  27583933 gctctataaaattcctg 27583917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 37 - 152
Target Start/End: Original strand, 44305512 - 44305627
Alignment:
Q  37 caggaaagatatatccgcaggaaatgtgaaattatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccaga 136  Q
    ||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||   ||| ||| |||| ||||| |||||  |||||  ||||     
T  44305512 caggaaagatatatccgtaggaaatgtgaatttatctgcaggaaatgtgaaattattcgtaggaaggaagtaacgttttgcgataatttttttgcccagg 44305611  T
Q  137 ctctataaaattcctg 152  Q
    ||||||||||||||||    
T  44305612 ctctataaaattcctg 44305627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 37 - 161
Target Start/End: Complemental strand, 4642052 - 4641928
Alignment:
Q  37 caggaaagatatatccgcaggaaatgtgaaattatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccaga 136  Q
    ||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||  ||| ||| |||| ||||| |||  | |||||   | |     
T  4642052 caggaaagatatatccgcaggaaatatgaaattatccgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgattgattttttgcacggg 4641953  T
Q  137 ctctataaaattcctgattctgcca 161  Q
    ||||||||||||||||| |||||||    
T  4641952 ctctataaaattcctgactctgcca 4641928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 50 - 148
Target Start/End: Original strand, 4774085 - 4774183
Alignment:
Q  50 tccgcaggaaatgtgaaattatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccagactctataaaatt 148  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||||  |||  || |||||||||| |||||  |||||  |||||||||||||||||    
T  4774085 tccgcaggaaatgtgaaattatccgcaagaaatgtgaaattattcgcaggaagaaagtaacattttgcgataatttttttgcccagactctataaaatt 4774183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 40 - 148
Target Start/End: Complemental strand, 25011549 - 25011441
Alignment:
Q  40 gaaagatatatccgcaggaaatgtgaaattatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccagactc 139  Q
    |||||||||||||| ||||||||||||||||||||||  |||||  ||||||||||| |||| ||| |||| ||||| |||||  |||||  ||||| ||    
T  25011549 gaaagatatatccgtaggaaatgtgaaattatctgcagaaaatgcaaaattattcgcatgaaggaagtaacgttttgcgataatttttttgcccagattc 25011450  T
Q  140 tataaaatt 148  Q
    |||||||||    
T  25011449 tataaaatt 25011441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 37 - 152
Target Start/End: Complemental strand, 1428434 - 1428319
Alignment:
Q  37 caggaaagatatatccgcaggaaatgtgaaattatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccaga 136  Q
    ||||||||||||||||| ||||||||||||  ||||||||  |||||||||||||||||   ||| ||| |||| ||||| | |||| |||||  ||||     
T  1428434 caggaaagatatatccgtaggaaatgtgaatctatctgcagaaaatgtgaaattattcgtaggaaggaagtaacgttttgcggtaaattttttgcccagg 1428335  T
Q  137 ctctataaaattcctg 152  Q
    ||||||||||||||||    
T  1428334 ctctataaaattcctg 1428319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 40 - 153
Target Start/End: Complemental strand, 44238853 - 44238744
Alignment:
Q  40 gaaagatatatccgcaggaaatgtgaaattatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccagactc 139  Q
    |||||||||||||||| |||||||||||||||| ||| ||||||||||| ||||||| ||||     |||||||||  ||||||  |||||  |||||||    
T  44238853 gaaagatatatccgcatgaaatgtgaaattatccgcaggaaatgtgaaaatattcgcatgaag----taacattttacgataaatattttacacagactc 44238758  T
Q  140 tataaaattcctga 153  Q
    ||||||||| ||||    
T  44238757 tataaaatttctga 44238744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 50 - 149
Target Start/End: Original strand, 27460792 - 27460890
Alignment:
Q  50 tccgcaggaaatgtgaaattatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccagactctataaaattc 149  Q
    |||| |||||||||||||||||||||| |||||||||||||||||||  ||| ||| |||  ||||| ||| ||||||||  |||| |||||||||||||    
T  27460792 tccgtaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgat-aaattttttcccaggctctataaaattc 27460890  T

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Target: chr1; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 69 - 152
Target Start/End: Original strand, 34459253 - 34459336
Alignment:
Q  69 tatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccagactctataaaattcctg 152  Q
    |||||| | |||||||||||||||||| | ||| ||| |||| |||||||||||| |||||  |||||||||||||||||||||    
T  34459253 tatctgtaggaaatgtgaaattattcgtgggaaggaagtaacgttttgtgataaattttttgcccagactctataaaattcctg 34459336  T

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Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 78 - 152
Target Start/End: Complemental strand, 31844615 - 31844541
Alignment:
Q  78 gaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccagactctataaaattcctg 152  Q
    |||||||||||||||||||  ||| ||| |||||||||| |||||| |||||  |||||||||||||||||||||    
T  31844615 gaaatgtgaaattattcgcaggaaggaagtaacattttgcgataaattttttgcccagactctataaaattcctg 31844541  T

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Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 48 - 109
Target Start/End: Complemental strand, 48940409 - 48940348
Alignment:
Q  48 tatccgcaggaaatgtgaaattatctgcatgaaatgtgaaattattcgcgtgaaagaaataa 109  Q
    |||| ||||||||||||||||||||||||  ||||||||||||||||||   ||||||||||    
T  48940409 tatctgcaggaaatgtgaaattatctgcaaaaaatgtgaaattattcgcagtaaagaaataa 48940348  T

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Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 69 - 148
Target Start/End: Complemental strand, 6802067 - 6801988
Alignment:
Q  69 tatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccagactctataaaatt 148  Q
    |||||||| |||||||| |||||| ||| || | |||||||| ||||| |||||| ||||| |||| |||||||||||||    
T  6802067 tatctgcaggaaatgtgcaattatccgcatgtaggaaataacgttttgcgataaattttttgtccaaactctataaaatt 6801988  T

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Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 69 - 152
Target Start/End: Complemental strand, 33468954 - 33468871
Alignment:
Q  69 tatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccagactctataaaattcctg 152  Q
    |||||| | |||||||||||||||||||  ||| ||| |||| ||||| |||||| |||||  |||| ||||||||||||||||    
T  33468954 tatctgtaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttgcccaggctctataaaattcctg 33468871  T

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Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 152
Target Start/End: Original strand, 24646189 - 24646263
Alignment:
Q  78 gaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccagactctataaaattcctg 152  Q
    ||||| ||||||||||||| |||| ||| |||||||||| |||||  |||||  |||| ||||||||||||||||    
T  24646189 gaaatttgaaattattcgcatgaaggaagtaacattttgagataatttttttgcccaggctctataaaattcctg 24646263  T

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Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 71
Target Start/End: Original strand, 6331786 - 6331820
Alignment:
Q  37 caggaaagatatatccgcaggaaatgtgaaattat 71  Q
    ||||||||||||||||| |||||||||||||||||    
T  6331786 caggaaagatatatccgtaggaaatgtgaaattat 6331820  T

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Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 71
Target Start/End: Original strand, 8239393 - 8239427
Alignment:
Q  37 caggaaagatatatccgcaggaaatgtgaaattat 71  Q
    ||||||||||||||||| |||||||||||||||||    
T  8239393 caggaaagatatatccgtaggaaatgtgaaattat 8239427  T

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Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 71
Target Start/End: Complemental strand, 31844635 - 31844601
Alignment:
Q  37 caggaaagatatatccgcaggaaatgtgaaattat 71  Q
    ||||||||||||||||| |||||||||||||||||    
T  31844635 caggaaagatatatccgtaggaaatgtgaaattat 31844601  T

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Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 148
Target Start/End: Original strand, 49898529 - 49898599
Alignment:
Q  78 gaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccagactctataaaatt 148  Q
    |||||||||||||||||||  ||| ||  |||||||||| |||||| |||||  |||||||||||| ||||    
T  49898529 gaaatgtgaaattattcgcaggaaggacgtaacattttgcgataaattttttgcccagactctatataatt 49898599  T

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Target: scaffold0075 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 37 - 152
Target Start/End: Original strand, 11624 - 11739
Alignment:
Q  37 caggaaagatatatccgcaggaaatgtgaaattatctgcatgaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccaga 136  Q
    ||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||   ||| ||| |||| ||||| |||||| |||||  ||||     
T  11624 caggaaagatatatccgtaggaaatgtgaatttatctgcaggaaatgtgaaattattcgtaggaaggaagtaacgttttgcgataaattttttgcccagg 11723  T
Q  137 ctctataaaattcctg 152  Q
     |||||||||||||||    
T  11724 ttctataaaattcctg 11739  T

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Target: scaffold0075; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 37 - 95
Target Start/End: Original strand, 7011 - 7069
Alignment:
Q  37 caggaaagatatatccgcaggaaatgtgaaattatctgcatgaaatgtgaaattattcg 95  Q
    |||||| |||||||||| |||||||||||| ||||| ||| ||||||| ||||||||||    
T  7011 caggaaggatatatccgtaggaaatgtgaatttatcagcaggaaatgtaaaattattcg 7069  T

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Target: scaffold0182 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 199 - 360
Target Start/End: Original strand, 15215 - 15369
Alignment:
Q  199 tgtaacatatttattatttataaact---tacatgaaaaaacgtaaatatttgtcagtgatgtataaaaaatacgtgactcattaacgtcatctttatct 295  Q
    ||||||||||||||||||||| ||||   ||||||| |||  |||||||||| |||  ||||||||||||||||  || | ||||||||||||||||||     
T  15215 tgtaacatatttattatttatgaactaattacatgagaaat-gtaaatatttttcaacgatgtataaaaaatacaggattaattaacgtcatctttatc- 15312  T
Q  296 ttatatttaataatgagatctttattattcggtaagattttgacatatttctaatctaccatttt 360  Q
            | ||||||||  ||||||||||  ||| ||||||||||||||| |||||||||||||    
T  15313 --------attaatgagaattttattattcaataatattttgacatatttccaatctaccatttt 15369  T

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Target: scaffold0638 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0638
Description:

Target: scaffold0638; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 148
Target Start/End: Original strand, 4219 - 4289
Alignment:
Q  78 gaaatgtgaaattattcgcgtgaaagaaataacattttgtgataaaatttttatccagactctataaaatt 148  Q
    |||||||||||||||||||  ||| ||| |||||||||| |||||  |||||  |||| ||||||||||||    
T  4219 gaaatgtgaaattattcgcaggaaggaagtaacattttgcgataatttttttgcccaggctctataaaatt 4289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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