View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1606_high_7 (Length: 431)
Name: NF1606_high_7
Description: NF1606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1606_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 352; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 19 - 421
Target Start/End: Original strand, 7601695 - 7602099
Alignment:
| Q |
19 |
aagaactcatagattgattgaatgatgtaaaatgtaaagtagttaacattgctatatgtacaagtgagtgtaaattgagtaacttgtgtagcaagttaca |
118 |
Q |
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| T |
7601695 |
aagaacacatagattgattgaatgatgtaaaatgaaaagtagttaacattgctatatatacaagtgagtgtaaattgagtaacttgtgtagcaagttaca |
7601794 |
T |
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| Q |
119 |
caagtttccaatctataactaactcctaaccatctaaaatcaattcaactagcattggattaagatgttgagctcttcagatgacttgt---agccggtt |
215 |
Q |
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| T |
7601795 |
caagtttccaa-ctataactaactcctaaccatctaaaatcaattcaactagcattggattaagctgttgagctcttcagatgacttgttgtagccggtt |
7601893 |
T |
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| Q |
216 |
gagactctgagggtgaatgagtgaagtgagatgaagtatggtaagatgaagatcggtaaaaatttaccataatcatctcgaaatgatataaatttataat |
315 |
Q |
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| T |
7601894 |
gagactctgagggtgaatgagtgaagtgagatgaagtatggtaagatgaagatcggtaaaaatttaccataatcatctcggaatgatataaatttataat |
7601993 |
T |
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| Q |
316 |
tggttttgttgacgagtgtttttgaaacactctttaagtatcttcaatttaaaaattattcttttaagacgttaaatattacaaattacaacacatttta |
415 |
Q |
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| T |
7601994 |
tggttttgttaacgagtgtttttgagacactctttaagtatcttcaatttaaaaattattcttttaagacgttaaatattacaaattacaatacatttta |
7602093 |
T |
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| Q |
416 |
cctatg |
421 |
Q |
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| T |
7602094 |
cctatg |
7602099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 402
Target Start/End: Original strand, 34898932 - 34898991
Alignment:
| Q |
343 |
cactctttaagtatcttcaatttaaaaattattcttttaagacgttaaatattacaaatt |
402 |
Q |
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| T |
34898932 |
cactctttaaggatcttcaatttaaaaattattttttcaaaaagtcaattattacaaatt |
34898991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 342 - 382
Target Start/End: Complemental strand, 167956 - 167916
Alignment:
| Q |
342 |
acactctttaagtatcttcaatttaaaaattattcttttaa |
382 |
Q |
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| T |
167956 |
acactctttaagtatctcaaatttaaaaattattcttttaa |
167916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 321 - 399
Target Start/End: Original strand, 44592839 - 44592917
Alignment:
| Q |
321 |
ttgttgacgagtgtttttgaaacactctttaagtatcttcaatttaaaaattattcttttaagacgttaaatattacaa |
399 |
Q |
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| T |
44592839 |
ttgttaacgagtgtttctggaacactctttaaatattcaaaatttaataattattcttttaaaaagttaactattacaa |
44592917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 321 - 399
Target Start/End: Complemental strand, 11721011 - 11720933
Alignment:
| Q |
321 |
ttgttgacgagtgtttttgaaacactctttaagtatcttcaatttaaaaattattcttttaagacgttaaatattacaa |
399 |
Q |
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| T |
11721011 |
ttgttaacgagtgtctttgagtcactctttaaacatcctaaatttaacaattattcttttaagaagtcaactattacaa |
11720933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 412
Target Start/End: Original strand, 15458417 - 15458485
Alignment:
| Q |
344 |
actctttaagtatcttcaatttaaaaattattcttttaagacgttaaatattacaaattacaacacatt |
412 |
Q |
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| T |
15458417 |
actctttaaagatctccaatttaaaaagtattctttaaaaaagttaaatgttacaaattataatacatt |
15458485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 402
Target Start/End: Complemental strand, 47308609 - 47308526
Alignment:
| Q |
318 |
gttttgttgacgagtgtttttgaaacactctttaagtatcttcaatttaaaaattattcttttaagacgttaaatattacaaatt |
402 |
Q |
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| T |
47308609 |
gttttgctaacgagtgtcttcgaaacactctttaaaaatctaaaatttataaattattccttcaaaac-ttaaatattacaaatt |
47308526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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