View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1606_low_10 (Length: 408)
Name: NF1606_low_10
Description: NF1606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1606_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 32613921 - 32613679
Alignment:
| Q |
1 |
tttccaaagacatcccaaaatannnnnnntcctatgtattataatgttcgaaatattcgaactcattcattaataatagatgtaccagaaattgaatttc |
100 |
Q |
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| T |
32613921 |
tttccaaagacatcccaaaataccctccctcatatgtattataatgttcgaaatattcgaactcattcattaataatagatgtaccagaaattgaatttc |
32613822 |
T |
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| Q |
101 |
attgtgaagtactatagtctagggtaggacttgctctctttgtatataaaaagcttgatgcacattgtatgcaaaagccagttctattttggacacacgg |
200 |
Q |
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| T |
32613821 |
atcgtgaagtactatagtctagggtaggacttgctctctttgtatataaaaagcttgatgcacattgtatgcaaaagccagttctattttggacatacgg |
32613722 |
T |
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| Q |
201 |
tacacgaatgaatattctatagcatcaaagtagatagatagca |
243 |
Q |
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| T |
32613721 |
tacacgaatgaatattctatagcatcaaagtagatagatagca |
32613679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 330 - 389
Target Start/End: Complemental strand, 32613590 - 32613531
Alignment:
| Q |
330 |
cgtttgattcataataaatgtgattgaactggttaaatcatgattcaaaggtctcgtttc |
389 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32613590 |
cgtttgattcataataaatgtgattgaactggttaaatcatgattcaaaggtctcgtttc |
32613531 |
T |
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