View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1606_low_11 (Length: 401)
Name: NF1606_low_11
Description: NF1606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1606_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 29 - 382
Target Start/End: Original strand, 13885501 - 13885842
Alignment:
| Q |
29 |
gaaacagaagatggttgagaaacttcgacaatgtcgcgaacttcctcttcatgttcctccgatagtgggacttatgtgttgttggcaggtggtatgttag |
128 |
Q |
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| T |
13885501 |
gaaacagaagatggttgagaaacttcgacaatgtcgtgaacttcctcttcacattcctccgatagtgagactt------------caggtggtatgttag |
13885588 |
T |
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| Q |
129 |
acctatttgatgacaattccttcttgtactctttttcaaaacgagatgttttgatattgctatgaatatcagaattaatatatggagagcttggtgttga |
228 |
Q |
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| T |
13885589 |
acctatttgatgacaattccttcttgtactctttttcaaaacgagatgttttgatattgctacgaatatcagaattaatatatggagaacttggggctga |
13885688 |
T |
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| Q |
229 |
attgtcagttatgccataaatgctagaaagggatgttgccgatgaataaaagtcagatttatatgtgaagccatcagaaaaacacggttctaaaagtgaa |
328 |
Q |
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| T |
13885689 |
attgtctgttatgccataaatgctagagagggatgttgtcgatgaataaaagtcagatttatatgtcaagccatcagaaaaacacggttctgaaagtgaa |
13885788 |
T |
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| Q |
329 |
aaagcaggacttgcacatacgctatgaacctgagtaaattgagaggtgtcatct |
382 |
Q |
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| T |
13885789 |
aaagcaggacttgcacatacgctacgaacctgagtaaattgagaggtgtcatct |
13885842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 112 - 359
Target Start/End: Complemental strand, 29092162 - 29091915
Alignment:
| Q |
112 |
ggcaggtggtatgttagacctatttgatgacaattccttcttgtactctttttcaaaacgagatgttttgatattgctatgaatatcagaattaatatat |
211 |
Q |
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| T |
29092162 |
ggcaggaggcatgatagatctatttgatgacaattccttcttgtactctttttcgaaacgagatgttttgatattgctatgaatatctggattaatatat |
29092063 |
T |
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| Q |
212 |
ggagagcttggtgttgaattgtcagttatgccataaatgctagaaagggatgttgccgatgaataaaagtcagatttatatgtgaagccatcagaaaaac |
311 |
Q |
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| T |
29092062 |
ggagaacttgggactgaattgtctgtcatgccatgaatgctggagagggacgacactgatgaataaaattcagatttatatgacaagccgtcagaaaaac |
29091963 |
T |
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| Q |
312 |
acggttctaaaagtgaaaaagcaggacttgcacatacgctatgaacct |
359 |
Q |
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| T |
29091962 |
accgttctgaaagtgacaaagtaggacttgcacacacgctatgtacct |
29091915 |
T |
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