View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1606_low_12 (Length: 384)
Name: NF1606_low_12
Description: NF1606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1606_low_12 |
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| [»] scaffold0099 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 24913751 - 24914046
Alignment:
| Q |
1 |
atcaccaaagaaaatcaagccacaatgtgaatcaaaaacaagacgtggttgtgaccgtaaggctcagcttcttgcatactctagacacctcagaaatatt |
100 |
Q |
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|||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24913751 |
atcatcaaagaaaatcaagtcacaatgtgaatcaaaaacaagacgtggttgtaaccgtaaggctcagcttcttgcatactctagacacctcagaaatatt |
24913850 |
T |
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| Q |
101 |
gaagcctcccaaaatattcaagttcaatcacaaccaaaatttaaggcaagttctctcttttcttctatggtcgcaatatgttgtcacatttgcggttatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24913851 |
gaagcctcccaaaatattcaagttcaatcacaaccaaaatttaaggcaagttctctcttttcttctatggtcgcaatatgttgtcacatttgcggttaca |
24913950 |
T |
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| Q |
201 |
ctgcaaacttttatattgtggtaaaacacatgcaaatgtggttgatgcggtcgcaattgcagttatagtgttgttgtggaggcgtctaaaattatt |
296 |
Q |
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||||||||||||||||||||||||||| || | ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
24913951 |
ctgcaaacttttatattgtggtaaaacgcaggaaaatggggttgatgcggtcgcaattgcagttatagtactgttgtggaggcgtctaaaattatt |
24914046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 179 - 308
Target Start/End: Original strand, 24989751 - 24989880
Alignment:
| Q |
179 |
tgttgtcacatttgcggttatgctgcaaacttttatattgtggtaaaacacatgcaaatgtggttgatgcggtcgcaattgcagttatagtgttgttgtg |
278 |
Q |
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||||||| ||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||| ||||| |
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| T |
24989751 |
tgttgtcgcatttgcagttatgctgcaaacttttatattgtggtaaaaagcaggcaaatgtggttgatgcggctgcaattgcagttatagtgttattgtg |
24989850 |
T |
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| Q |
279 |
gaggcgtctaaaattattgctatattgcaa |
308 |
Q |
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| T |
24989851 |
gaggcgtctaaaattattactatactgcaa |
24989880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 179 - 296
Target Start/End: Original strand, 24913506 - 24913623
Alignment:
| Q |
179 |
tgttgtcacatttgcggttatgctgcaaacttttatattgtggtaaaacacatgcaaatgtggttgatgcggtcgcaattgcagttatagtgttgttgtg |
278 |
Q |
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||||||| ||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||| ||||||||| |
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| T |
24913506 |
tgttgtcgcatttgcagttatgctgcaaacttttatattgtggtaaaaagcaggcaaatgtggttgatgcggctgcaattgcagttatagagttgttgtg |
24913605 |
T |
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| Q |
279 |
gaggcgtctaaaattatt |
296 |
Q |
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| T |
24913606 |
gaggcgtctaaaattatt |
24913623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 24989668 - 24989748
Alignment:
| Q |
1 |
atcaccaaagaaaatcaagccacaatgtgaatcaaaaacaagacgtggttgtgaccgtaaggctcagcttcttgcatactc |
81 |
Q |
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|||| ||||||||| ||||||||||| ||||||||||||||||||||| ||||| ||||||||||| |||||||||||||| |
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| T |
24989668 |
atcatcaaagaaaaccaagccacaatatgaatcaaaaacaagacgtggctgtgatcgtaaggctcaacttcttgcatactc |
24989748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 24913423 - 24913503
Alignment:
| Q |
1 |
atcaccaaagaaaatcaagccacaatgtgaatcaaaaacaagacgtggttgtgaccgtaaggctcagcttcttgcatactc |
81 |
Q |
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|||| ||||||||| ||||||||||| ||||||||||||||||||||| ||||| ||||||| ||| |||||||||||||| |
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| T |
24913423 |
atcatcaaagaaaaccaagccacaatatgaatcaaaaacaagacgtggctgtgatcgtaaggttcaacttcttgcatactc |
24913503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 324 - 374
Target Start/End: Original strand, 24914118 - 24914168
Alignment:
| Q |
324 |
ttgtgaaatttttacagaagcgtttatggtttgtgaaaccggttagaataa |
374 |
Q |
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| T |
24914118 |
ttgtgaaatttttacagaagcgtttatggtttgtgaaaccggttagaataa |
24914168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 324 - 374
Target Start/End: Original strand, 24989941 - 24989991
Alignment:
| Q |
324 |
ttgtgaaatttttacagaagcgtttatggtttgtgaaaccggttagaataa |
374 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||| |||||| |
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| T |
24989941 |
ttgtgaaatttttacataagcgtttatggtttgtgaaaccggttggaataa |
24989991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0099 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0099
Description:
Target: scaffold0099; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 308
Target Start/End: Original strand, 26157 - 26231
Alignment:
| Q |
237 |
tgtggttgatgcggtc-gcaattgcagttatagtgttgttgtggaggcg-tct-aaaattattgctatattgcaa |
308 |
Q |
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|||||||||||||| | |||||||||||||||||||| ||||||||||| ||| ||||||||| ||||| ||||| |
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| T |
26157 |
tgtggttgatgcgggctgcaattgcagttatagtgttattgtggaggcgttctaaaaattattactatactgcaa |
26231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 190 - 226
Target Start/End: Complemental strand, 22601584 - 22601548
Alignment:
| Q |
190 |
ttgcggttatgctgcaaacttttatattgtggtaaaa |
226 |
Q |
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||||||||||||||||||| |||||||||| |||||| |
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| T |
22601584 |
ttgcggttatgctgcaaacctttatattgtagtaaaa |
22601548 |
T |
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