View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1606_low_13 (Length: 381)
Name: NF1606_low_13
Description: NF1606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1606_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 9 - 365
Target Start/End: Complemental strand, 37881015 - 37880658
Alignment:
| Q |
9 |
gtagattatactggtactgaagtttgtggccaattgtaacttgttttcatttttgcagattgcagtttccatggcaagcaaagcagctacacttgcaaga |
108 |
Q |
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| T |
37881015 |
gtagattatattggtactgaagtttgtggccaattgtaacttgttttcatttttgcagattgcagtttccatggcaagcaaagcagctacacttgcaaga |
37880916 |
T |
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| Q |
109 |
gaattgaagtctcttaaatcagatttatgttttatgcaagaaagatgtggtctgcttgaagaagagaaccgaagactgcgtgacggtttcgctaaaggag |
208 |
Q |
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| T |
37880915 |
gaattgaagtctcttaaatcagatttatgttttatgcaagaaagatgtggtctgcttgaagaagagaaccgaagactgcgtgacggtttcgctaaaggag |
37880816 |
T |
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| Q |
209 |
tcaggcctgaggaagatgatctggtaaggaatccattcaatcttaataataccatatggttaaaagaatttgaaaaagttcctgctaaagagttagtgat |
308 |
Q |
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| T |
37880815 |
tcaggcctgaggaagatgatctggtaaggaatccattcaatcttaatcataccatatggttaaaagaatttgaaaaagttcctgctaaagagttagtgat |
37880716 |
T |
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| Q |
309 |
gttatatcatttttgtatttctaatgcaactaatattgttacatt-ttttacttcatt |
365 |
Q |
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| T |
37880715 |
gttatatcatttttgtatttctaatgcaactaatattgttacatttttttacttcatt |
37880658 |
T |
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