View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1606_low_14 (Length: 375)
Name: NF1606_low_14
Description: NF1606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1606_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 12021783 - 12021421
Alignment:
| Q |
1 |
aaaatattatcgcacaatttagaaacttactaaagatnnnnnnnnngagttctattaatattcttgagtgatttcgtttagacttgagtgattcctcttc |
100 |
Q |
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| T |
12021783 |
aaaatattatcgcacaatttagaaaattactgaagataaaaaaaaagagttctattaatattcttgagtgatttcgtttagacttgagtgatttctcttc |
12021684 |
T |
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| Q |
101 |
atccctcctgaagtcaaggtctaccacaacttttcctaataatttggatctaattaaaaattatcaacttaaagaggatcaaaatccagaaaaaacattg |
200 |
Q |
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| T |
12021683 |
atccctcctgaagtcaaggtctaccacaactttttctaataatttggatctaattaaaaattatcaacttaaagaggatcaaaatccagaaacaacattg |
12021584 |
T |
|
| Q |
201 |
gaattaacacaaagaaattgat--agagttaaatggcttgggtgcatgacatttacgtaagcttactatatactcaaaagtaaatgtcataggcacctta |
298 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
12021583 |
gaattaacacaaagaaattgatagagagttaaatggcttgggtgcatgacatttacgtaagcttactatatactccaaagtaaatgtcataggcacctta |
12021484 |
T |
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| Q |
299 |
ttaggaatatattctaaacctaagaaatataccaaaacgtttcatagtttgtttgaaatatat |
361 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12021483 |
ttaggaatatattctaaacctaagaaatataccaaaacgtttcatagtttgtttgaaatatat |
12021421 |
T |
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