View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1606_low_17 (Length: 297)

Name: NF1606_low_17
Description: NF1606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1606_low_17
NF1606_low_17
[»] chr6 (24 HSPs)
chr6 (33-288)||(5257116-5257371)
chr6 (33-288)||(5284174-5284426)
chr6 (22-260)||(5157444-5157676)
chr6 (17-183)||(5434063-5434229)
chr6 (19-252)||(5396980-5397207)
chr6 (17-183)||(5128304-5128470)
chr6 (17-183)||(5176767-5176933)
chr6 (22-260)||(5425943-5426175)
chr6 (22-260)||(5066510-5066742)
chr6 (17-183)||(5278594-5278760)
chr6 (33-183)||(5073795-5073945)
chr6 (17-263)||(5354427-5354667)
chr6 (17-183)||(5102501-5102667)
chr6 (22-144)||(5350427-5350549)
chr6 (17-107)||(5690122-5690212)
chr6 (19-94)||(5181903-5181978)
chr6 (17-183)||(5344889-5345055)
chr6 (69-183)||(5243800-5243914)
chr6 (17-86)||(5447615-5447684)
chr6 (22-112)||(5096741-5096831)
chr6 (22-112)||(5370604-5370694)
chr6 (22-182)||(5383359-5383519)
chr6 (28-73)||(5447196-5447241)
chr6 (17-77)||(5281328-5281388)
[»] chr7 (1 HSPs)
chr7 (20-183)||(36213716-36213879)
[»] chr4 (6 HSPs)
chr4 (17-183)||(4344674-4344840)
chr4 (17-183)||(4361105-4361271)
chr4 (19-181)||(4123828-4123990)
chr4 (17-183)||(4320506-4320672)
chr4 (17-140)||(4335373-4335496)
chr4 (17-107)||(4133388-4133478)
[»] chr5 (1 HSPs)
chr5 (17-183)||(8877637-8877803)
[»] scaffold0294 (1 HSPs)
scaffold0294 (22-182)||(8788-8948)
[»] chr2 (1 HSPs)
chr2 (17-87)||(22584197-22584267)
[»] chr3 (4 HSPs)
chr3 (32-89)||(47986833-47986890)
chr3 (32-89)||(47996120-47996177)
chr3 (32-89)||(48005407-48005464)
chr3 (32-89)||(48014692-48014749)


Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 33 - 288
Target Start/End: Complemental strand, 5257371 - 5257116
Alignment:
Q  33 atctttaaccactctaattgcaaataacactgcaataacaagagtgccattttcagttgtaagatcaaaaggcatcggatttgtctctttgcgcggttat 132  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||| |||||||||||||| |||||||    
T  5257371 atctttaaccactctaattgcaaataacactgcaataacaagagtgccattatcagttttaagatcaaaaagcatcgaatttgtctctttgcacggttat 5257272  T
Q  133 gaaggattttcaagcattgtgtttccattaatcattttgtcttggatgtcaacaggaactaatcatctcccatttccatttcaaattacatcttctgtct 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  5257271 gaaggattttcaagcattgtgtttccattaatcattttgtcttggatgtcaacaggaactaatgatctcccatttccatttcaaattacatcttctgtct 5257172  T
Q  233 tgtcatctcttgtttctttagatgtaccgagtaatagaatacatgaactttcatct 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5257171 tgtcatctcttgtttctttagatgtaccgagtaatagaatacatgaactttcatct 5257116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 33 - 288
Target Start/End: Complemental strand, 5284426 - 5284174
Alignment:
Q  33 atctttaaccactctaattgcaaataacactgcaataacaagagtgccattttcagttgtaagatcaaaaggcatcggatttgtctctttgcgcggttat 132  Q
    ||||||||||||||| || || |||||||| ||||||||||||||||| |||||||| ||||| || ||| |||| |||| | |  ||||| ||||||||    
T  5284426 atctttaaccactctgatagctaataacaccgcaataacaagagtgcccttttcagtagtaaggtcgaaaagcattggatatattgctttgtgcggttat 5284327  T
Q  133 gaaggattttcaagcattgtgtttccattaatcattttgtcttggatgtcaacaggaactaatcatctcccatttccatttcaaattacatcttctgtct 232  Q
    || ||| ||||||||  ||||||||||||||| |||||||| ||||||||| ||   || ||| ||||||||||||||||||||||| | |||||||       
T  5284326 gagggactttcaagcgatgtgtttccattaataattttgtcatggatgtcagca---acaaataatctcccatttccatttcaaatttcttcttctgaaa 5284230  T
Q  233 tgtcatctcttgtttctttagatgtaccgagtaatagaatacatgaactttcatct 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5284229 tgtcatctcttgtttctttagatgtaccgagtaatagaatacatgaactttcatct 5284174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 22 - 260
Target Start/End: Complemental strand, 5157676 - 5157444
Alignment:
Q  22 gaacatatggaatctttaaccactctaattgcaaataacactgcaataacaagagtgccattttcagttgtaagatcaaaaggcatcggatttgtctctt 121  Q
    ||||| ||||||||||||||||||||  ||||| |  |||||||||||| |||||| || |||||||| ||||| |||||| |||| ||||   ||||||    
T  5157676 gaacagatggaatctttaaccactctgcttgcacacgacactgcaataaaaagagtacccttttcagtagtaaggtcaaaaagcattggatacatctctt 5157577  T
Q  122 tgcgcggttatgaaggattttcaagcattgtgtttccattaatcattttgtcttggatgtcaacaggaactaatcatctcccatttccatttcaaattac 221  Q
    || |||| ||||||||||||||  |   |||||||||||  ||||||| ||||||||||||| |   ||| ||| ||||||||| ||||||||||   ||    
T  5157576 tgggcggctatgaaggattttctcgtgatgtgtttccatctatcatttggtcttggatgtcacc---aacaaataatctcccatctccatttcaa---ac 5157483  T
Q  222 atcttctgtcttgtcatctcttgtttctttagatgtacc 260  Q
    |||| ||| | |||||||||||||| |||||||||||||    
T  5157482 atctgctgccatgtcatctcttgttcctttagatgtacc 5157444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 17 - 183
Target Start/End: Original strand, 5434063 - 5434229
Alignment:
Q  17 acttggaacatatggaatctttaaccactctaattgcaaataacactgcaataacaagagtgccattttcagttgtaagatcaaaaggcatcggatttgt 116  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||||| |||||||||  |||||||  | ||||||||| |||| |||| | |    
T  5434063 acttggaacatatggaatctttaaccactctgcttgcaaataacactgcaataaaaagagtgcctctttcagtactgagatcaaaaagcattggatatat 5434162  T
Q  117 ctctttgcgcggttatgaaggattttcaagcattgtgtttccattaatcattttgtcttggatgtca 183  Q
    ||||||| |||||||||||||||| |||  |  | | |||||||| ||||||  |||||||||||||    
T  5434163 ctctttgtgcggttatgaaggattctcacacgatttatttccatttatcattcagtcttggatgtca 5434229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 252
Target Start/End: Original strand, 5396980 - 5397207
Alignment:
Q  19 ttggaacatatggaatctttaaccactctaattgcaaataacactgcaataacaagagtgccattttcagttgtaagatcaaaaggcatcggatttgtct 118  Q
    |||||||| |||||||||||||||||  |  ||||||||||||||||||||| ||||||||| |||||| || |||| | |||| |||| |||||| |||    
T  5396980 ttggaacagatggaatctttaaccaccttggttgcaaataacactgcaataaaaagagtgccgttttcaattttaaggttaaaaagcattggatttatct 5397079  T
Q  119 ctttgcgcggttatgaaggattttcaagcattgtgtttccattaatcattttgtcttggatgtcaacaggaactaatcatctcccatttccatttcaaat 218  Q
    ||||| |||| ||||||||||||||| |    |||||||||   ||||||| ||||||||||||| |   ||| | | | ||||||||||||||||||      
T  5397080 ctttgtgcggatatgaaggattttcatgtgaagtgtttccagctatcatttcgtcttggatgtcacc---aacaattaacctcccatttccatttcaa-- 5397174  T
Q  219 tacatcttctgtcttgtcatctcttgtttcttta 252  Q
     |||||| ||| | ||||||||||| ||||||||    
T  5397175 -acatctgctgccatgtcatctcttatttcttta 5397207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 17 - 183
Target Start/End: Complemental strand, 5128470 - 5128304
Alignment:
Q  17 acttggaacatatggaatctttaaccactctaattgcaaataacactgcaataacaagagtgccattttcagttgtaagatcaaaaggcatcggatttgt 116  Q
    |||||||||| |||||||| ||||| |||||  ||||||||||||||||||||| |||||| || |||||||| ||||| |||||| |||| |||| | |    
T  5128470 acttggaacaaatggaatcattaacaactctgcttgcaaataacactgcaataaaaagagtacccttttcagtagtaaggtcaaaaagcattggatatat 5128371  T
Q  117 ctctttgcgcggttatgaaggattttcaagcattgtgtttccattaatcattttgtcttggatgtca 183  Q
    |||| || ||||  ||||||||||||||||   |||||||||||  ||||| | |||||||||||||    
T  5128370 ctctctgtgcggccatgaaggattttcaagtgatgtgtttccatctatcatctggtcttggatgtca 5128304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 17 - 183
Target Start/End: Original strand, 5176767 - 5176933
Alignment:
Q  17 acttggaacatatggaatctttaaccactctaattgcaaataacactgcaataacaagagtgccattttcagttgtaagatcaaaaggcatcggatttgt 116  Q
    |||||||||| |||||||||||||| |||||  ||||||||||||||||||||||||||||||| || ||| | ||||| |||||| |||| ||||   |    
T  5176767 acttggaacaaatggaatctttaactactctgcttgcaaataacactgcaataacaagagtgcccttgtcaatagtaaggtcaaaaagcattggatacat 5176866  T
Q  117 ctctttgcgcggttatgaaggattttcaagcattgtgtttccattaatcattttgtcttggatgtca 183  Q
    ||||||| |||| ||||||||||| ||| |   | | ||||||| |||||||| |||||||||||||    
T  5176867 ctctttgtgcggctatgaaggattctcacgtgatatatttccatcaatcatttggtcttggatgtca 5176933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 22 - 260
Target Start/End: Original strand, 5425943 - 5426175
Alignment:
Q  22 gaacatatggaatctttaaccactctaattgcaaataacactgcaataacaagagtgccattttcagttgtaagatcaaaaggcatcggatttgtctctt 121  Q
    ||||| |||||||||||||||||||| |||||| |||| |||||||||| |||||| || |||||||| ||||  ||| || |||| ||||   ||||||    
T  5425943 gaacaaatggaatctttaaccactctgattgcacataaaactgcaataaaaagagtacccttttcagtggtaatgtcacaaagcattggatacatctctt 5426042  T
Q  122 tgcgcggttatgaaggattttcaagcattgtgtttccattaatcattttgtcttggatgtcaacaggaactaatcatctcccatttccatttcaaattac 221  Q
    || |||| ||||||||||||||| |   ||||||||||   ||||||| ||||||||||||| |   ||| ||| |||||||||  |||||||||   ||    
T  5426043 tgtgcggctatgaaggattttcacgtgatgtgtttccagcgatcatttggtcttggatgtcacc---aacaaataatctcccatccccatttcaa---ac 5426136  T
Q  222 atcttctgtcttgtcatctcttgtttctttagatgtacc 260  Q
    ||||  | || |||||||||||||| |||||||||||||    
T  5426137 atctgatatcatgtcatctcttgttcctttagatgtacc 5426175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 22 - 260
Target Start/End: Complemental strand, 5066742 - 5066510
Alignment:
Q  22 gaacatatggaatctttaaccactctaattgcaaataacactgcaataacaagagtgccattttcagttgtaagatcaaaaggcatcggatttgtctctt 121  Q
    ||||| ||||||||||||||||||||  ||||| |||| |||||||||| |||| | || |||||||| ||||| |||||| |||| ||||   ||||||    
T  5066742 gaacaaatggaatctttaaccactctgcttgcacataaaactgcaataaaaagaatacccttttcagtagtaaggtcaaaaagcattggatacatctctt 5066643  T
Q  122 tgcgcggttatgaaggattttcaagcattgtgtttccattaatcattttgtcttggatgtcaacaggaactaatcatctcccatttccatttcaaattac 221  Q
    || |||| ||||||||||| ||  |   |||||||||||  ||||||||||||||||||||| |   ||| ||| |||||||||  | |||||||   ||    
T  5066642 tgtgcggctatgaaggattctcgcgtgatgtgtttccatctatcattttgtcttggatgtcacc---aacaaataatctcccatccctatttcaa---ac 5066549  T
Q  222 atcttctgtcttgtcatctcttgtttctttagatgtacc 260  Q
    |||| || || || ||||||||||| |||||||||||||    
T  5066548 atctactatcatgccatctcttgttcctttagatgtacc 5066510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 183
Target Start/End: Original strand, 5278594 - 5278760
Alignment:
Q  17 acttggaacatatggaatctttaaccactctaattgcaaataacactgcaataacaagagtgccattttcagttgtaagatcaaaaggcatcggatttgt 116  Q
    |||||||||| |||||||||||||| |||||  ||||||||||||||||||||||||||||||| || ||  | ||||| |||||| |||| ||||   |    
T  5278594 acttggaacaaatggaatctttaactactctgcttgcaaataacactgcaataacaagagtgcccttgtctatagtaaggtcaaaaagcattggatacat 5278693  T
Q  117 ctctttgcgcggttatgaaggattttcaagcattgtgtttccattaatcattttgtcttggatgtca 183  Q
    ||||||| |||| ||||||||||| ||| |   | | ||||||| |||||||| |||||||||||||    
T  5278694 ctctttgtgcggctatgaaggattctcacgtgatatatttccatcaatcatttggtcttggatgtca 5278760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 33 - 183
Target Start/End: Complemental strand, 5073945 - 5073795
Alignment:
Q  33 atctttaaccactctaattgcaaataacactgcaataacaagagtgccattttcagttgtaagatcaaaaggcatcggatttgtctctttgcgcggttat 132  Q
    ||||||||||||||| || ||||||||||| ||||||||||||||||| |||||||| ||||| || ||| |||| |||| | | |||||| |||| |||    
T  5073945 atctttaaccactctgatagcaaataacaccgcaataacaagagtgcccttttcagtagtaaggtcgaaaagcattggatatatttctttgtgcggctat 5073846  T
Q  133 gaaggattttcaagcattgtgtttccattaatcattttgtcttggatgtca 183  Q
    |||||||| ||| |   |||||| ||||  ||||||| |||||||||||||    
T  5073845 gaaggattctcacgtgatgtgttcccatcgatcatttggtcttggatgtca 5073795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 17 - 263
Target Start/End: Complemental strand, 5354667 - 5354427
Alignment:
Q  17 acttggaacatatggaatctttaaccactctaattgcaaataacactgcaataacaagagtgccattttcagttgtaagatcaaaaggcatcggatttgt 116  Q
    ||||||||||  |||||||||||||||| ||  |||||||| ||||||||||||||||||| || || ||| | || || || ||| |||| |||| | |    
T  5354667 acttggaacaattggaatctttaaccaccctgcttgcaaatgacactgcaataacaagagtacccttctcaatagttagttccaaaagcattggatatat 5354568  T
Q  117 ctctttgcgcggttatgaaggattttcaagcattgtgtttccattaatcattttgtcttggatgtcaacaggaactaatcatctcccatttccatttcaa 216  Q
     |||||  | || ||||||||||| ||| |   |||||||||||  ||||||| ||||||||||||| |   ||| ||| |||||| || ||||||||||    
T  5354567 ttctttatgtggctatgaaggattctcacgtgatgtgtttccatctatcatttggtcttggatgtcacc---aacaaataatctccgatctccatttcaa 5354471  T
Q  217 attacatcttctgtcttgtcatctcttgtttctttagatgtaccgag 263  Q
       |||||| ||| | ||||||||||||||||||| |||||||||||    
T  5354470 ---acatctgctgccatgtcatctcttgtttcttttgatgtaccgag 5354427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 183
Target Start/End: Complemental strand, 5102667 - 5102501
Alignment:
Q  17 acttggaacatatggaatctttaaccactctaattgcaaataacactgcaataacaagagtgccattttcagttgtaagatcaaaaggcatcggatttgt 116  Q
    |||||||||| |||||||| |||||||||||  | ||||| |||||||||||||||| |||||| |||||||| ||||| |||||| |||| |||| | |    
T  5102667 acttggaacaaatggaatcattaaccactcttctagcaaacaacactgcaataacaacagtgcccttttcagtagtaaggtcaaaaagcattggatatat 5102568  T
Q  117 ctctttgcgcggttatgaaggattttcaagcattgtgtttccattaatcattttgtcttggatgtca 183  Q
    |||| |  | || ||||||||| |||||     |||||||||||  ||||| | |||||||||||||    
T  5102567 ctctctatgtggctatgaaggactttcacatgatgtgtttccatctatcatctggtcttggatgtca 5102501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 22 - 144
Target Start/End: Original strand, 5350427 - 5350549
Alignment:
Q  22 gaacatatggaatctttaaccactctaattgcaaataacactgcaataacaagagtgccattttcagttgtaagatcaaaaggcatcggatttgtctctt 121  Q
    ||||| ||||||||||||||||||||  ||||| |||| |||||||||| |||| | || |||||||| ||||| |||||| |||| ||||   ||||||    
T  5350427 gaacaaatggaatctttaaccactctgcttgcacataaaactgcaataaaaagaatacccttttcagtagtaaggtcaaaaagcattggatacatctctt 5350526  T
Q  122 tgcgcggttatgaaggattttca 144  Q
    || |||| |||||||||||||||    
T  5350527 tgtgcggctatgaaggattttca 5350549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 5690212 - 5690122
Alignment:
Q  17 acttggaacatatggaatctttaaccactctaattgcaaataacactgcaataacaagagtgccattttcagttgtaagatcaaaaggcat 107  Q
    |||||||||| ||||||||||||||||||||  |||||||| |||||| ||||||||| ||||| |||||| ||||||| |||||| ||||    
T  5690212 acttggaacaaatggaatctttaaccactctgcttgcaaatgacactggaataacaagtgtgcccttttcaattgtaaggtcaaaaagcat 5690122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 5181978 - 5181903
Alignment:
Q  19 ttggaacatatggaatctttaaccactctaattgcaaataacactgcaataacaagagtgccattttcagttgtaa 94  Q
    |||||||| ||| |||||||||||||  | |||||||||||||||||||||||||||||||| |||||||| ||||    
T  5181978 ttggaacaaatgaaatctttaaccacattgattgcaaataacactgcaataacaagagtgccgttttcagtagtaa 5181903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 17 - 183
Target Start/End: Original strand, 5344889 - 5345055
Alignment:
Q  17 acttggaacatatggaatctttaaccactctaattgcaaataacactgcaataacaagagtgccattttcagttgtaagatcaaaaggcatcggatttgt 116  Q
    |||| ||||| ||| |||||||||||| ||| || |||||||||||||||||||||| ||| || |||| ||| ||||| |||||| |||| |||| | |    
T  5344889 acttagaacaaatgaaatctttaaccattctgatcgcaaataacactgcaataacaaaagttccctttttagtagtaaggtcaaaaagcattggatatat 5344988  T
Q  117 ctctttgcgcggttatgaaggattttcaagcattgtgtttccattaatcattttgtcttggatgtca 183  Q
     ||| || | || ||||||||||| ||| ||  ||| |||||||  ||||| | |||||||||||||    
T  5344989 ttctctgtgtggctatgaaggattctcacgcgatgtatttccatctatcatctggtcttggatgtca 5345055  T

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Target: chr6; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 69 - 183
Target Start/End: Complemental strand, 5243914 - 5243800
Alignment:
Q  69 aacaagagtgccattttcagttgtaagatcaaaaggcatcggatttgtctctttgcgcggttatgaaggattttcaagcattgtgtttccattaatcatt 168  Q
    |||||||||||| |||||||| ||||| |||||| ||||||||| | | |||||| | || ||||||||||||||| ||  ||| |||||||  |||||     
T  5243914 aacaagagtgcccttttcagtagtaaggtcaaaaagcatcggatatatttctttgtgtggctatgaaggattttcacgcgatgtatttccatctatcatc 5243815  T
Q  169 ttgtcttggatgtca 183  Q
    | |||||||||||||    
T  5243814 tggtcttggatgtca 5243800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 5447615 - 5447684
Alignment:
Q  17 acttggaacatatggaatctttaaccactctaattgcaaataacactgcaataacaagagtgccattttc 86  Q
    |||||||||| ||||||||||||||||||||  |||||||||| ||| ||||||||| |||||| |||||    
T  5447615 acttggaacagatggaatctttaaccactctgcttgcaaataatacttcaataacaacagtgcccttttc 5447684  T

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Target: chr6; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 112
Target Start/End: Original strand, 5096741 - 5096831
Alignment:
Q  22 gaacatatggaatctttaaccactctaattgcaaataacactgcaataacaagagtgccattttcagttgtaagatcaaaaggcatcggat 112  Q
    ||||| |||||||| ||||||| |||  ||||||||||||||| ||||| |||||| || |||||||| ||||| |||||| |||| ||||    
T  5096741 gaacaaatggaatcattaaccattctgcttgcaaataacactggaataaaaagagtacccttttcagtagtaaggtcaaaaagcattggat 5096831  T

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Target: chr6; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 112
Target Start/End: Original strand, 5370604 - 5370694
Alignment:
Q  22 gaacatatggaatctttaaccactctaattgcaaataacactgcaataacaagagtgccattttcagttgtaagatcaaaaggcatcggat 112  Q
    ||||| |||||||| |||||||||||  ||||||||||||||||||||| ||| || || |||||||| ||| | |||||| |||| ||||    
T  5370604 gaacagatggaatcattaaccactctgcttgcaaataacactgcaataaaaagggtacccttttcagtagtacggtcaaaaagcattggat 5370694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 22 - 182
Target Start/End: Original strand, 5383359 - 5383519
Alignment:
Q  22 gaacatatggaatctttaaccactctaattgcaaataacactgcaataacaagagtgccattttcagttgtaagatcaaaaggcatcggatttgtctctt 121  Q
    ||||| |||||||||||||| ||| |  ||||| |||||||||||||||||||||| ||  ||||| || |||| |||||| | || | || | | ||||    
T  5383359 gaacaaatggaatctttaactactttgcttgcagataacactgcaataacaagagttcccctttcaattttaaggtcaaaaagtattgtatatatttctt 5383458  T
Q  122 tgcgcggttatgaaggattttcaagcattgtgtttccattaatcattttgtcttggatgtc 182  Q
    || ||||  |||||||||| ||| |   |||||||||||  ||||||  ||||||||||||    
T  5383459 tgtgcggccatgaaggattctcacgtgatgtgtttccatccatcattaagtcttggatgtc 5383519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 73
Target Start/End: Original strand, 5447196 - 5447241
Alignment:
Q  28 atggaatctttaaccactctaattgcaaataacactgcaataacaa 73  Q
    ||||||||||||||||||||  |||||||||||||| |||||||||    
T  5447196 atggaatctttaaccactcttcttgcaaataacacttcaataacaa 5447241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 5281328 - 5281388
Alignment:
Q  17 acttggaacatatggaatctttaaccactctaattgcaaataacactgcaataacaagagt 77  Q
    |||||||||| |||||||| ||||| || || ||||| ||| |||||||||||||||||||    
T  5281328 acttggaacaaatggaatccttaacgaccctgattgctaatgacactgcaataacaagagt 5281388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 9e-33; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 20 - 183
Target Start/End: Complemental strand, 36213879 - 36213716
Alignment:
Q  20 tggaacatatggaatctttaaccactctaattgcaaataacactgcaataacaagagtgccattttcagttgtaagatcaaaaggcatcggatttgtctc 119  Q
    ||||||| |||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||  | | | ||    
T  36213879 tggaacagatggaatctttaaccaccttgattgcaaataacactgcaataacaagagtgccattttcagtagtaagatctaaaagcatcgcttatatatc 36213780  T
Q  120 tttgcgcggttatgaaggattttcaagcattgtgtttccattaatcattttgtcttggatgtca 183  Q
    |||| |||| ||||||||||| |||     |||||||||||  ||||||| |||||||||||||    
T  36213779 tttgtgcggctatgaaggattctcacatgatgtgtttccatctatcatttggtcttggatgtca 36213716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 17 - 183
Target Start/End: Original strand, 4344674 - 4344840
Alignment:
Q  17 acttggaacatatggaatctttaaccactctaattgcaaataacactgcaataacaagagtgccattttcagttgtaagatcaaaaggcatcggatttgt 116  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||| ||| || |||||||| ||||| |||||| |||| |||||| |    
T  4344674 acttggaacaaatggaatctttaaccactctgattgcaaataacactgctataacaaaagtacccttttcagtagtaaggtcaaaacgcattggatttat 4344773  T
Q  117 ctctttgcgcggttatgaaggattttcaagcattgtgtttccattaatcattttgtcttggatgtca 183  Q
     |||||| | || ||||||||||| ||| |   ||||||||| |  ||||||| |||||||||||||    
T  4344774 ttctttgtgtggatatgaaggattctcacgtgatgtgtttccttctatcatttggtcttggatgtca 4344840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 17 - 183
Target Start/End: Original strand, 4361105 - 4361271
Alignment:
Q  17 acttggaacatatggaatctttaaccactctaattgcaaataacactgcaataacaagagtgccattttcagttgtaagatcaaaaggcatcggatttgt 116  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||||  ||||||| ||| || |||||| |||||||||||||| |||| |||||| |    
T  4361105 acttggaacaaatggaatctttaaccactctgattgcaaataacactggtataacaaaagtacccttttcaattgtaagatcaaaacgcattggatttat 4361204  T
Q  117 ctctttgcgcggttatgaaggattttcaagcattgtgtttccattaatcattttgtcttggatgtca 183  Q
     |||||| | || ||||||||||| ||| |   ||||||||| |  ||||||| |||||||||||||    
T  4361205 ttctttgtgtggatatgaaggattctcacgtgatgtgtttccttctatcatttcgtcttggatgtca 4361271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 181
Target Start/End: Complemental strand, 4123990 - 4123828
Alignment:
Q  19 ttggaacatatggaatctttaaccactctaattgcaaataacactgcaataacaagagtgccattttcagttgtaagatcaaaaggcatcggatttgtct 118  Q
    |||||||| |||||||||||||||||||| ||||||||||| ||||| ||||||| |||||| ||||| || ||||| |||||| |||| |||||| | |    
T  4123990 ttggaacaaatggaatctttaaccactctgattgcaaataatactgctataacaaaagtgcccttttcggtagtaaggtcaaaaagcattggatttattt 4123891  T
Q  119 ctttgcgcggttatgaaggattttcaagcattgtgtttccattaatcattttgtcttggatgt 181  Q
    || || | || ||||||||||| ||  |   ||||||||| |  ||||||| |||||||||||    
T  4123890 ctctgtgtggatatgaaggattctctcgtgatgtgtttccttctatcatttcgtcttggatgt 4123828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 183
Target Start/End: Complemental strand, 4320672 - 4320506
Alignment:
Q  17 acttggaacatatggaatctttaaccactctaattgcaaataacactgcaataacaagagtgccattttcagttgtaagatcaaaaggcatcggatttgt 116  Q
    |||||||||| ||||||||||||||||| || ||||||||||| ||||  ||||||| ||| || |||||| | ||||| |||||| |||| |||||| |    
T  4320672 acttggaacaaatggaatctttaaccaccctgattgcaaataatactggtataacaaaagttcccttttcattagtaaggtcaaaaagcattggatttat 4320573  T
Q  117 ctctttgcgcggttatgaaggattttcaagcattgtgtttccattaatcattttgtcttggatgtca 183  Q
     ||| || | || ||||||||||| ||| |   ||||||||| |  ||||||| |||||||||||||    
T  4320572 ttctctgtgtggatatgaaggattctcacgtgatgtgtttccttctatcatttggtcttggatgtca 4320506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 140
Target Start/End: Original strand, 4335373 - 4335496
Alignment:
Q  17 acttggaacatatggaatctttaaccactctaattgcaaataacactgcaataacaagagtgccattttcagttgtaagatcaaaaggcatcggatttgt 116  Q
    |||||||||| |||||||||||||||||||| || ||| |||||||||  ||||||| |||||| |||||||| ||||  |||||| |||| || | | |    
T  4335373 acttggaacaaatggaatctttaaccactctcatggcagataacactggtataacaaaagtgcccttttcagtagtaaagtcaaaaagcattggctatat 4335472  T
Q  117 ctctttgcgcggttatgaaggatt 140  Q
    ||||||| | || |||||||||||    
T  4335473 ctctttgtgtgggtatgaaggatt 4335496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 4133478 - 4133388
Alignment:
Q  17 acttggaacatatggaatctttaaccactctaattgcaaataacactgcaataacaagagtgccattttcagttgtaagatcaaaaggcat 107  Q
    |||||||||| ||||| |||||||||||||| ||||   |||||||||||||||||| |||||| |||||||| | ||| |||||| ||||    
T  4133478 acttggaacaaatggagtctttaaccactctgattgtggataacactgcaataacaaaagtgcccttttcagtcgcaaggtcaaaaagcat 4133388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 17 - 183
Target Start/End: Original strand, 8877637 - 8877803
Alignment:
Q  17 acttggaacatatggaatctttaaccactctaattgcaaataacactgcaataacaagagtgccattttcagttgtaagatcaaaaggcatcggatttgt 116  Q
    |||| ||||| ||| ||||||||||||||||  ||||||||||||||||||||| |||||| ||||||||| | ||||| |||||| |||| |||| | |    
T  8877637 acttagaacagatgaaatctttaaccactctgcttgcaaataacactgcaataaaaagagtaccattttcattagtaaggtcaaaaagcattggatatat 8877736  T
Q  117 ctctttgcgcggttatgaaggattttcaagcattgtgtttccattaatcattttgtcttggatgtca 183  Q
     |||||| |||| ||||||||||||||  |   |||||||||||  ||||||| |||||||||||||    
T  8877737 ttctttgtgcggctatgaaggattttcgcgtgatgtgtttccatctatcatttggtcttggatgtca 8877803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 22 - 182
Target Start/End: Complemental strand, 8948 - 8788
Alignment:
Q  22 gaacatatggaatctttaaccactctaattgcaaataacactgcaataacaagagtgccattttcagttgtaagatcaaaaggcatcggatttgtctctt 121  Q
    ||||| ||||||||||||||||||||  ||||| ||||||||||| ||||||||||||| |||||| | ||||| |||||| | || | || | | ||||    
T  8948 gaacagatggaatctttaaccactctgcttgcagataacactgcattaacaagagtgcccttttcaatagtaaggtcaaaaagtattgtatatatttctt 8849  T
Q  122 tgcgcggttatgaaggattttcaagcattgtgtttccattaatcattttgtcttggatgtc 182  Q
    || ||||  |||||||||| ||| |   |||||||||||  ||||||  ||||||||||||    
T  8848 tgtgcggccatgaaggattctcacgtgatgtgtttccatctatcattaagtcttggatgtc 8788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 22584267 - 22584197
Alignment:
Q  17 acttggaacatatggaatctttaaccactctaattgcaaataacactgcaataacaagagtgccattttca 87  Q
    |||||||||| ||||||||||||||||||||  |||||||| | |||||||||| || |||||||||||||    
T  22584267 acttggaacaaatggaatctttaaccactctgcttgcaaatgaaactgcaataaaaaaagtgccattttca 22584197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 89
Target Start/End: Complemental strand, 47986890 - 47986833
Alignment:
Q  32 aatctttaaccactctaattgcaaataacactgcaataacaagagtgccattttcagt 89  Q
    |||||||||| ||| |  |||||||||||||||| |||||||||||||| || |||||    
T  47986890 aatctttaactactttggttgcaaataacactgcgataacaagagtgcctttatcagt 47986833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 89
Target Start/End: Complemental strand, 47996177 - 47996120
Alignment:
Q  32 aatctttaaccactctaattgcaaataacactgcaataacaagagtgccattttcagt 89  Q
    |||||||||| ||| |  |||||||||||||||| |||||||||||||| || |||||    
T  47996177 aatctttaactactttggttgcaaataacactgcgataacaagagtgcctttatcagt 47996120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 89
Target Start/End: Complemental strand, 48005464 - 48005407
Alignment:
Q  32 aatctttaaccactctaattgcaaataacactgcaataacaagagtgccattttcagt 89  Q
    |||||||||| ||| |  |||||||||||||||| |||||||||||||| || |||||    
T  48005464 aatctttaactactttggttgcaaataacactgcgataacaagagtgcctttatcagt 48005407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 89
Target Start/End: Complemental strand, 48014749 - 48014692
Alignment:
Q  32 aatctttaaccactctaattgcaaataacactgcaataacaagagtgccattttcagt 89  Q
    |||||||||| ||| |  |||||||||||||||| |||||||||||||| || |||||    
T  48014749 aatctttaactactttggttgcaaataacactgcgataacaagagtgcctttatcagt 48014692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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