View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1606_low_2 (Length: 1130)

Name: NF1606_low_2
Description: NF1606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1606_low_2
NF1606_low_2
[»] chr7 (5 HSPs)
chr7 (16-367)||(36775245-36775622)
chr7 (734-959)||(36774594-36774825)
chr7 (593-726)||(36775014-36775147)
chr7 (1019-1130)||(36774423-36774534)
chr7 (145-191)||(47536693-47536739)
[»] scaffold0157 (1 HSPs)
scaffold0157 (144-223)||(26429-26508)
[»] chr4 (3 HSPs)
chr4 (144-223)||(12493969-12494048)
chr4 (148-223)||(21570231-21570306)
chr4 (145-223)||(44218839-44218917)
[»] chr2 (2 HSPs)
chr2 (107-187)||(33320990-33321070)
chr2 (145-223)||(370994-371072)
[»] chr1 (1 HSPs)
chr1 (107-187)||(41196374-41196454)
[»] chr5 (1 HSPs)
chr5 (145-223)||(42962250-42962328)
[»] chr8 (1 HSPs)
chr8 (564-596)||(33954737-33954769)
[»] chr3 (1 HSPs)
chr3 (536-642)||(19710880-19710986)
[»] chr6 (1 HSPs)
chr6 (564-625)||(8514154-8514215)


Alignment Details
Target: chr7 (Bit Score: 270; Significance: 1e-150; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 16 - 367
Target Start/End: Complemental strand, 36775622 - 36775245
Alignment:
Q  16 atcggcacaaactaataaaaacaagtcaaaaacgaaaagtcagtgttgttgtgaaagcaacataaacataaaggaaagattaacagaacgtacccttctc 115  Q
    |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36775622 atcggcacaaactaataacaacaagtcaaaaacaaaaagtcagtgttgttgtgaaagcaacataaacataaaggaaagattaacagaacgtacccttctc 36775523  T
Q  116 gagatttttgacatgcttggaggaaagggtgatcctaatcttatggatctgttcctgagattcctccaaaccaggcttcgtgggtttcatcgcagcgtac 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  36775522 gagatttttgacatgcttggaggaaagggtgatcctaatcttatggatctgttcctgagattcctccaaaccaggcttggtgggtttcatcgcagcgtac 36775423  T
Q  216 gccattttgtttgttcagagtatacacac------------tgtatgtattagagcgccgcagctggtgaatcaaaggagacagaaattgaacgaaggaa 303  Q
    |||||||||||||||||||||||||||||            |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36775422 gccattttgtttgttcagagtatacacactgaatgtgaatatgtatgtactagagcgccgcagctggtgaatcaaaggagacagaaattgaacgaaggaa 36775323  T
Q  304 gtgttttaacaggtg--------------atggattgtgtttttaggtcaaactaacaggccgaacccatcaccgttc 367  Q
    |||||||||||||||              |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  36775322 gtgttttaacaggtgagggattgttgggtatgggttgtgtttttaggtcaaactaacaggccgaacccatcaccgttc 36775245  T

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Target: chr7; HSP #2
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 734 - 959
Target Start/End: Complemental strand, 36774825 - 36774594
Alignment:
Q  734 tacccctgtttttatattatataaataccttacttctcacaattatctgtatgaataggaacagcatac--agnnnnnnnnnnggtctcatagtcattgt 831  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||          |||||||||||||| ||    
T  36774825 tacccctgtttttatattatataaataccttacttctcacaattatctgtatgaataggaacagcatacagagttttttgtttggtctcatagtcatagt 36774726  T
Q  832 caaaatatacaaagtattgaattgcagtatgttttgattcagttcaactttttattt----tnnnnnnnggccaaagttatgctggataggggatatgtg 927  Q
    |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||            |||||||||||||||||||||||||||||||    
T  36774725 caaaatatacaaagtattaaattgcagtatgttttgattcagtttaactttttatttaaaaaaaaaaaaggccaaagttatgctggataggggatatgtg 36774626  T
Q  928 ctatgagaaggatgaaaatttgaggcaggtgt 959  Q
    |||||||||||||||||||||| |||||||||    
T  36774625 ctatgagaaggatgaaaatttgtggcaggtgt 36774594  T

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Target: chr7; HSP #3
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 593 - 726
Target Start/End: Complemental strand, 36775147 - 36775014
Alignment:
Q  593 attgaatgtaggtataaaataactttacatcgataatgtataaaaattaagctttttatattgatggatattattaattattttagatgatctttcaata 692  Q
    ||||||||||||||||||||||||||||||||  |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  36775147 attgaatgtaggtataaaataactttacatcgccaatgtacaaaaattaaactttttatattgatggatattattaattattttagatgacctttcaata 36775048  T
Q  693 aatatatgtgcgttgttcaaataattatgaatat 726  Q
    |||||||||| ||| |||||||||||||||||||    
T  36775047 aatatatgtgagtttttcaaataattatgaatat 36775014  T

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Target: chr7; HSP #4
Raw Score: 88; E-Value: 1e-41
Query Start/End: Original strand, 1019 - 1130
Target Start/End: Complemental strand, 36774534 - 36774423
Alignment:
Q  1019 tgtaattttttctaacatgttttgcataagaatggagaggatataagaagagaggatagtgtaatttaaacaattattcggaggagatgagagtgtaatt 1118  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||    
T  36774534 tgtaattttttctaacatgttttgtataagaatggagaggatataagaagagaggatagtgtaatttaaacaattattccgagaagaagagagtgtaatt 36774435  T
Q  1119 tattctaaacaa 1130  Q
    || |||| ||||    
T  36774434 tactctagacaa 36774423  T

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Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 191
Target Start/End: Complemental strand, 47536739 - 47536693
Alignment:
Q  145 tgatcctaatcttatggatctgttcctgagattcctccaaaccaggc 191  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||    
T  47536739 tgatcctaatcttatggatctgttcctgagattctttcaaaccaggc 47536693  T

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Target: scaffold0157 (Bit Score: 60; Significance: 5e-25; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 144 - 223
Target Start/End: Original strand, 26429 - 26508
Alignment:
Q  144 gtgatcctaatcttatggatctgttcctgagattcctccaaaccaggcttcgtgggtttcatcgcagcgtacgccatttt 223  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||| |||||||| ||||||||    
T  26429 gtgatcctaatcttatggatctgttcctgagattcttccaaaccaggcttagttggtttcattgcagcgtatgccatttt 26508  T

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Target: chr4 (Bit Score: 60; Significance: 5e-25; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 144 - 223
Target Start/End: Complemental strand, 12494048 - 12493969
Alignment:
Q  144 gtgatcctaatcttatggatctgttcctgagattcctccaaaccaggcttcgtgggtttcatcgcagcgtacgccatttt 223  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||| |||||||| ||||||||    
T  12494048 gtgatcctaatcttatggatctgttcctgagattcttccaaaccaggcttagttggtttcattgcagcgtatgccatttt 12493969  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 148 - 223
Target Start/End: Complemental strand, 21570306 - 21570231
Alignment:
Q  148 tcctaatcttatggatctgttcctgagattcctccaaaccaggcttcgtgggtttcatcgcagcgtacgccatttt 223  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||  |||||||||| ||||| || ||||||||    
T  21570306 tcctaatcttatggatctgttcatgagattcttccaaaccaggcttaatgggtttcattgcagcatatgccatttt 21570231  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 145 - 223
Target Start/End: Complemental strand, 44218917 - 44218839
Alignment:
Q  145 tgatcctaatcttatggatctgttcctgagattcctccaaaccaggcttcgtgggtttcatcgcagcgtacgccatttt 223  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||||  ||||| |||| ||||| || ||||||||    
T  44218917 tgatcctaatcttatggatctgttcctgagattctttcaaaccaggcttaatgggtctcattgcagcatatgccatttt 44218839  T

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Target: chr2 (Bit Score: 49; Significance: 2e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 107 - 187
Target Start/End: Original strand, 33320990 - 33321070
Alignment:
Q  107 acccttctcgagatttttgacatgcttggaggaaagggtgatcctaatcttatggatctgttcctgagattcctccaaacc 187  Q
    ||||||||||||||||| ||| ||||| ||||| || |||||||||||||| |||||||| |||||||| |||||||||||    
T  33320990 acccttctcgagattttggacgtgcttagaggagagagtgatcctaatcttgtggatctgctcctgagactcctccaaacc 33321070  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 145 - 223
Target Start/End: Original strand, 370994 - 371072
Alignment:
Q  145 tgatcctaatcttatggatctgttcctgagattcctccaaaccaggcttcgtgggtttcatcgcagcgtacgccatttt 223  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||||  |||||||||| ||| | || ||||||||    
T  370994 tgatcctaatcttatggatctgttcctgagattctttcaaaccaggcttaatgggtttcattgcaacatatgccatttt 371072  T

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Target: chr1 (Bit Score: 49; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 107 - 187
Target Start/End: Original strand, 41196374 - 41196454
Alignment:
Q  107 acccttctcgagatttttgacatgcttggaggaaagggtgatcctaatcttatggatctgttcctgagattcctccaaacc 187  Q
    ||||||||||||||||| ||| ||||| ||||| || |||||||||||||| |||||||| |||||||| |||||||||||    
T  41196374 acccttctcgagattttggacgtgcttagaggagagagtgatcctaatcttgtggatctgctcctgagactcctccaaacc 41196454  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 145 - 223
Target Start/End: Original strand, 42962250 - 42962328
Alignment:
Q  145 tgatcctaatcttatggatctgttcctgagattcctccaaaccaggcttcgtgggtttcatcgcagcgtacgccatttt 223  Q
    |||||||||||||||||||||||||||||||||| |  |||||||||||  ||| |||||| ||||| || ||||||||    
T  42962250 tgatcctaatcttatggatctgttcctgagattcttttaaaccaggcttaatggatttcattgcagcatatgccatttt 42962328  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 564 - 596
Target Start/End: Original strand, 33954737 - 33954769
Alignment:
Q  564 atatttattaaatgatgtggcaatacatgattg 596  Q
    |||||||||||||||||||||||||||||||||    
T  33954737 atatttattaaatgatgtggcaatacatgattg 33954769  T

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Target: chr3 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 536 - 642
Target Start/End: Complemental strand, 19710986 - 19710880
Alignment:
Q  536 tattacgtttaaaatcacatgacttaatatatttattaaatgatgtggcaatacatgattgaatgtaggtataaaataactttacatcgataatgtataa 635  Q
    |||| |||| |||| ||||||||||   ||||||||||||||||||| ||| |||||||||  || | || ||||||| ||||| | ||| | ||||||     
T  19710986 tattgcgttaaaaaacacatgacttgtcatatttattaaatgatgtgacaacacatgattgggtgcatgtgtaaaatagctttaaaccgacagtgtatag 19710887  T
Q  636 aaattaa 642  Q
    |||||||    
T  19710886 aaattaa 19710880  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 564 - 625
Target Start/End: Original strand, 8514154 - 8514215
Alignment:
Q  564 atatttattaaatgatgtggcaatacatgattgaatgtaggtataaaataactttacatcga 625  Q
    ||||||||||| ||||||| |||||||| |||| ||||| || |||||||| | ||||||||    
T  8514154 atatttattaattgatgtgacaatacatcattgcatgtatgtgtaaaataattatacatcga 8514215  T

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