View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1606_low_24 (Length: 248)
Name: NF1606_low_24
Description: NF1606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1606_low_24 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 9 - 248
Target Start/End: Complemental strand, 41280714 - 41280473
Alignment:
| Q |
9 |
ttattctaatggtgctcatattgatcctattatgcatcctattcatttggctgctagtactgctttaggtgtaattgcttgtgtgcttgcattgcttctt |
108 |
Q |
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| T |
41280714 |
ttattctaatggtgctcatattgatcctattatgcatcctattcatttggctgctagtactgctttaggtgtaattgcttgtgtgcttgcattgcttctt |
41280615 |
T |
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| Q |
109 |
ccttaccctcgttttgcttgctaccaggtaattttatcattttctttcttgctatgtttagagacattaattacac--nnnnnnnatgctcatatgtaca |
206 |
Q |
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| T |
41280614 |
ccttaccctcgttttgcttgctaccaggtaattttatcattttctttcttgctatgtttagagacattaattacactttttttttatgctcatatgtcca |
41280515 |
T |
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| Q |
207 |
tgctatgaaattgtttatattatattaatgtttgtattattc |
248 |
Q |
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| T |
41280514 |
tgctatgaaattgtttatattatattaatgtttgtattattc |
41280473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 87
Target Start/End: Original strand, 38806444 - 38806483
Alignment:
| Q |
48 |
tattcatttggctgctagtactgctttaggtgtaattgct |
87 |
Q |
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| T |
38806444 |
tattcatttggcagctagtactgctttatgtgtaattgct |
38806483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 73 - 181
Target Start/End: Complemental strand, 34981887 - 34981782
Alignment:
| Q |
73 |
ttaggtgtaattgcttgtgtgcttgcattgcttcttccttaccctcgttttgcttgctaccaggtaattttatcattttctttcttgctatgtttagaga |
172 |
Q |
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| T |
34981887 |
ttaggtgtaattgcttgtgtggttgcatt---tcttccttgccctccttttgcttgctaccaggtaattttatcattttctttcatgctatgtttcgaga |
34981791 |
T |
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| Q |
173 |
cattaatta |
181 |
Q |
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| T |
34981790 |
cattaatta |
34981782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 91
Target Start/End: Original strand, 34981612 - 34981660
Alignment:
| Q |
43 |
catcctattcatttggctgctagtactgctttaggtgtaattgcttgtg |
91 |
Q |
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|||| |||||||||||| ||||||||| ||||| ||||||||||||||| |
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| T |
34981612 |
catcttattcatttggcagctagtactcctttatgtgtaattgcttgtg |
34981660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 87
Target Start/End: Original strand, 54185219 - 54185258
Alignment:
| Q |
48 |
tattcatttggctgctagtactgctttaggtgtaattgct |
87 |
Q |
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| T |
54185219 |
tattcatttggcagctagtactgctttatgtgtaattgct |
54185258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 87
Target Start/End: Original strand, 46636669 - 46636708
Alignment:
| Q |
48 |
tattcatttggctgctagtactgctttaggtgtaattgct |
87 |
Q |
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| T |
46636669 |
tattcatttggcagctagtactgctttatgtgtaattgct |
46636708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 87
Target Start/End: Complemental strand, 43514833 - 43514794
Alignment:
| Q |
48 |
tattcatttggctgctagtactgctttaggtgtaattgct |
87 |
Q |
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| T |
43514833 |
tattcatttggcagctagtactgctttatgtgtaattgct |
43514794 |
T |
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