View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1606_low_30 (Length: 231)
Name: NF1606_low_30
Description: NF1606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1606_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 23452331 - 23452109
Alignment:
| Q |
1 |
aatctcctaaaatgtctctgctcaccgacgacccacaaaccaaacaacggctccaagatcacatcatacgaataaatctacaacaccatagccaaataaa |
100 |
Q |
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| T |
23452331 |
aatctcctaaaatgtctctgctcaccgacgacccacaaaccaaacaacggctccaagatcacatcatacgaataaatctacaacaccatagccaaataaa |
23452232 |
T |
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| Q |
101 |
gtttacaaggattaaaattgtagaaacagtatgtatcccatgatatttccgctgaacggctgaagcgaagcaaaatgaaaaaattggtttcttccaagac |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23452231 |
gtttacaaggattaaaattgtagaaacaatatgtatcccacgatatttccgctgaacggctgaagcgaagcaaaatgaaaaaattggtttcttccaagac |
23452132 |
T |
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| Q |
201 |
ttcgcagcactagctatattctt |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
23452131 |
ttcgcagcactagctatattctt |
23452109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 23869914 - 23869969
Alignment:
| Q |
3 |
tctcctaaaatgtctctgctcaccgacgacccacaaaccaaacaacggctccaaga |
58 |
Q |
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|||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||| |
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| T |
23869914 |
tctcctaaaatggctctgctcaccgacgacccacaaacaaaacaacagctccaaga |
23869969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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