View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1606_low_31 (Length: 214)

Name: NF1606_low_31
Description: NF1606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1606_low_31
NF1606_low_31
[»] chr1 (10 HSPs)
chr1 (106-191)||(12021924-12022011)
chr1 (109-186)||(35883600-35883680)
chr1 (112-164)||(40809498-40809550)
chr1 (109-159)||(38520015-38520066)
chr1 (135-186)||(43891762-43891813)
chr1 (134-164)||(2279339-2279369)
chr1 (114-182)||(30198009-30198079)
chr1 (109-185)||(33694199-33694274)
chr1 (109-163)||(35196131-35196185)
chr1 (108-157)||(4466692-4466741)
[»] chr2 (15 HSPs)
chr2 (110-186)||(31227545-31227622)
chr2 (110-186)||(13453948-13454027)
chr2 (134-186)||(28481805-28481857)
chr2 (109-186)||(29472024-29472103)
chr2 (111-186)||(31629604-31629682)
chr2 (110-186)||(43820734-43820813)
chr2 (114-149)||(9051933-9051968)
chr2 (109-148)||(13453779-13453818)
chr2 (110-168)||(14871639-14871698)
chr2 (111-182)||(15123933-15124007)
chr2 (115-149)||(16718314-16718348)
chr2 (112-168)||(14876707-14876764)
chr2 (111-182)||(22303203-22303272)
chr2 (109-186)||(22966784-22966864)
chr2 (112-163)||(39147766-39147818)
[»] chr3 (10 HSPs)
chr3 (134-185)||(39284663-39284714)
chr3 (111-186)||(9326978-9327056)
chr3 (109-171)||(25641579-25641643)
chr3 (109-186)||(31143268-31143348)
chr3 (112-186)||(3282534-3282610)
chr3 (111-149)||(6178458-6178496)
chr3 (110-148)||(38957534-38957572)
chr3 (109-186)||(47187513-47187593)
chr3 (110-171)||(52939652-52939713)
chr3 (109-164)||(48405408-48405464)
[»] chr8 (4 HSPs)
chr8 (109-186)||(13592764-13592844)
chr8 (109-186)||(30170722-30170802)
chr8 (111-186)||(21467384-21467460)
chr8 (109-182)||(26629107-26629183)
[»] chr4 (16 HSPs)
chr4 (114-186)||(13140296-13140369)
chr4 (109-164)||(50890091-50890146)
chr4 (109-186)||(35206166-35206246)
chr4 (112-164)||(336825-336877)
chr4 (134-186)||(40293264-40293316)
chr4 (111-161)||(52372212-52372263)
chr4 (110-186)||(51957518-51957595)
chr4 (109-164)||(961274-961330)
chr4 (109-164)||(20760253-20760309)
chr4 (109-164)||(20766644-20766700)
chr4 (111-171)||(37997256-37997316)
chr4 (109-148)||(38864769-38864809)
chr4 (112-155)||(40760074-40760118)
chr4 (109-164)||(44272828-44272883)
chr4 (133-186)||(45652664-45652719)
chr4 (109-149)||(50050636-50050676)
[»] chr5 (12 HSPs)
chr5 (109-186)||(30838358-30838438)
chr5 (109-176)||(14780426-14780494)
chr5 (114-186)||(19645613-19645686)
chr5 (111-164)||(35634854-35634907)
chr5 (109-164)||(611862-611918)
chr5 (108-164)||(1079970-1080026)
chr5 (107-139)||(9957233-9957265)
chr5 (111-171)||(17063865-17063927)
chr5 (109-137)||(21353560-21353588)
chr5 (109-164)||(29803223-29803278)
chr5 (114-182)||(38097782-38097853)
chr5 (110-186)||(43057434-43057513)
[»] scaffold0178 (1 HSPs)
scaffold0178 (134-186)||(11546-11600)
[»] chr7 (10 HSPs)
chr7 (110-149)||(40231738-40231777)
chr7 (109-186)||(48395246-48395326)
chr7 (109-157)||(49094764-49094813)
chr7 (109-164)||(2849538-2849594)
chr7 (109-148)||(27473102-27473141)
chr7 (110-148)||(45154573-45154611)
chr7 (136-186)||(27306018-27306070)
chr7 (107-148)||(32933544-32933585)
chr7 (111-143)||(11325898-11325930)
chr7 (133-186)||(42663408-42663463)
[»] scaffold1625 (1 HSPs)
scaffold1625 (109-186)||(774-854)
[»] chr6 (5 HSPs)
chr6 (135-186)||(38621-38674)
chr6 (111-186)||(6256435-6256510)
chr6 (111-171)||(8098606-8098666)
chr6 (115-171)||(10840722-10840781)
chr6 (114-186)||(13093629-13093706)


Alignment Details
Target: chr1 (Bit Score: 60; Significance: 9e-26; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 106 - 191
Target Start/End: Complemental strand, 12022011 - 12021924
Alignment:
Q  106 gagaagagaaatgatacttgtacaatta-tttttgacaacttttgaaacaact-atctctcatactcaaatgtatttttattccgtct 191  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||||  ||||||||||||||||||||||||||||| ||||    
T  12022011 gagaagagaaatgatacttttacaattactttttgacaacttttgaaacaacccatctctcatactcaaatgtatttttattcagtct 12021924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 109 - 186
Target Start/End: Complemental strand, 35883680 - 35883600
Alignment:
Q  109 aagagaaatgatacttgtacaattat-ttttgacaacttttgaaacaac--tatctctcatactcaaatgtatttttattc 186  Q
    ||||||||||||| |||||||||||| ||||||||||||||||||||||  ||||||||||||||| |||| |||||||||    
T  35883680 aagagaaatgatatttgtacaattattttttgacaacttttgaaacaaccatatctctcatactcacatgtgtttttattc 35883600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 164
Target Start/End: Original strand, 40809498 - 40809550
Alignment:
Q  112 agaaatgatacttgtacaattatttttgacaacttttgaaacaactatctctc 164  Q
    |||||||||| |||||||||  || |||||||||||||||||||| |||||||    
T  40809498 agaaatgatatttgtacaatacttattgacaacttttgaaacaaccatctctc 40809550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 159
Target Start/End: Complemental strand, 38520066 - 38520015
Alignment:
Q  109 aagagaaatgatacttgtacaattatt-tttgacaacttttgaaacaactat 159  Q
    ||||||||| ||| ||||||||| ||| ||||||||||||||||||||||||    
T  38520066 aagagaaataatatttgtacaatcattatttgacaacttttgaaacaactat 38520015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 186
Target Start/End: Complemental strand, 43891813 - 43891762
Alignment:
Q  135 ttttgacaacttttgaaacaactatctctcatactcaaatgtatttttattc 186  Q
    |||||| |||||||||||||||| ||||||||||| | |||| |||||||||    
T  43891813 ttttgagaacttttgaaacaactctctctcatacttacatgtgtttttattc 43891762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 164
Target Start/End: Complemental strand, 2279369 - 2279339
Alignment:
Q  134 tttttgacaacttttgaaacaactatctctc 164  Q
    |||||||||||||||||||||||||||||||    
T  2279369 tttttgacaacttttgaaacaactatctctc 2279339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 182
Target Start/End: Original strand, 30198009 - 30198079
Alignment:
Q  114 aaatgatacttgtacaattatttt-tgacaacttttgaaacaactatctctcatactcaaat-gtattttt 182  Q
    |||||||| |||||||| |||||| |||||| |||| |||||| ||||| |||||||||||| ||||||||    
T  30198009 aaatgatatttgtacaactattttgtgacaaatttttaaacaattatctttcatactcaaatcgtattttt 30198079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 185
Target Start/End: Complemental strand, 33694274 - 33694199
Alignment:
Q  109 aagagaaatgatacttgtacaatta-tttttgacaacttttgaaacaactatctctcatactcaaatgtatttttatt 185  Q
    ||||||||||||| ||||||||| | ||||| ||||||||| |||||||  |||||| |||||| |||| ||||||||    
T  33694274 aagagaaatgatatttgtacaatcactttttaacaacttttaaaacaac--tctctcgtactcacatgtgtttttatt 33694199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 163
Target Start/End: Original strand, 35196131 - 35196185
Alignment:
Q  109 aagagaaatgatacttgtacaattatttttgacaacttttgaaacaactatctct 163  Q
    ||||||||||||||||||||||   ||| |||||||||||| ||||||| |||||    
T  35196131 aagagaaatgatacttgtacaacattttatgacaacttttgtaacaactttctct 35196185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 108 - 157
Target Start/End: Original strand, 4466692 - 4466741
Alignment:
Q  108 gaagagaaatgatacttgtacaattatttttgacaacttttgaaacaact 157  Q
    |||||||||||||| ||||||||  | ||||||||||||||| |||||||    
T  4466692 gaagagaaatgatatttgtacaaccagttttgacaacttttgtaacaact 4466741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 110 - 186
Target Start/End: Complemental strand, 31227622 - 31227545
Alignment:
Q  110 agagaaatgatacttgtacaatta-tttttgacaacttttgaaacaactatctctcatactcaaatgtatttttattc 186  Q
    ||||||||||||  |||||||| | |||||||||||||||||||||||| ||||||||||||| |||| |||||||||    
T  31227622 agagaaatgatatgtgtacaatcactttttgacaacttttgaaacaactctctctcatactcacatgtttttttattc 31227545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 110 - 186
Target Start/End: Complemental strand, 13454027 - 13453948
Alignment:
Q  110 agagaaatgatacttgtacaatta-tttttgacaacttttgaaacaa--ctatctctcatactcaaatgtatttttattc 186  Q
    ||||||||||||  |||||||| | ||||||||||||||||||||||  || ||||||||||||| |||| |||||||||    
T  13454027 agagaaatgatatctgtacaatcactttttgacaacttttgaaacaattctctctctcatactcacatgtgtttttattc 13453948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 134 - 186
Target Start/End: Original strand, 28481805 - 28481857
Alignment:
Q  134 tttttgacaacttttgaaacaactatctctcatactcaaatgtatttttattc 186  Q
    |||||||||||||||| ||||||| ||||||||||||| |||| |||||||||    
T  28481805 tttttgacaacttttggaacaactctctctcatactcacatgtgtttttattc 28481857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 109 - 186
Target Start/End: Complemental strand, 29472103 - 29472024
Alignment:
Q  109 aagagaaatgatacttgtacaattatttttgacaacttttgaaacaa--ctatctctcatactcaaatgtatttttattc 186  Q
    ||||||||||||| ||||| ||| | |||||||||||||||||||||  |  ||||||||||||| |||| |||||||||    
T  29472103 aagagaaatgatatttgtaaaatcacttttgacaacttttgaaacaaccccctctctcatactcacatgtgtttttattc 29472024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 186
Target Start/End: Original strand, 31629604 - 31629682
Alignment:
Q  111 gagaaatgatacttgtacaatta-tttttgacaacttttgaaacaactatctctc--atactcaaatgtatttttattc 186  Q
    ||||||||||| |||||||| || |||||||||||||||| |||||| |||||||  ||||||| |||| |||||||||    
T  31629604 gagaaatgatatttgtacaactactttttgacaacttttggaacaaccatctctctaatactcacatgtgtttttattc 31629682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 186
Target Start/End: Complemental strand, 43820813 - 43820734
Alignment:
Q  110 agagaaatgatacttgtacaatta-tttttgacaacttttgaaacaactatc--tctcatactcaaatgtatttttattc 186  Q
    |||||||||||| ||||||||| | ||||| ||||||||||||||||| |||  ||||||||||| || | |||||||||    
T  43820813 agagaaatgatatttgtacaatcatttttttacaacttttgaaacaaccatctttctcatactcacatatttttttattc 43820734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 149
Target Start/End: Original strand, 9051933 - 9051968
Alignment:
Q  114 aaatgatacttgtacaattatttttgacaacttttg 149  Q
    |||||||| |||||||||||||||||||||||||||    
T  9051933 aaatgatatttgtacaattatttttgacaacttttg 9051968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 148
Target Start/End: Original strand, 13453779 - 13453818
Alignment:
Q  109 aagagaaatgatacttgtacaattatttttgacaactttt 148  Q
    ||||||||||||| |||||||||| |||||||||||||||    
T  13453779 aagagaaatgatatttgtacaattttttttgacaactttt 13453818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 168
Target Start/End: Original strand, 14871639 - 14871698
Alignment:
Q  110 agagaaatgatacttgtacaattatttt-tgacaacttttgaaacaactatctctcatac 168  Q
    |||||||||||| ||||||||  ||||| | |||| ||||||||||||||||||||||||    
T  14871639 agagaaatgatatttgtacaaccattttcttacaatttttgaaacaactatctctcatac 14871698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 182
Target Start/End: Complemental strand, 15124007 - 15123933
Alignment:
Q  111 gagaaatgatacttgtacaattattttt-gacaacttttgaaacaa--ctatctctcatactcaaatgtattttt 182  Q
    ||||||||||| ||||||||  |||||| |||||||||||||||||   ||||||||||||||| |||| |||||    
T  15124007 gagaaatgatatttgtacaaccattttttgacaacttttgaaacaatcatatctctcatactcacatgtgttttt 15123933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 149
Target Start/End: Original strand, 16718314 - 16718348
Alignment:
Q  115 aatgatacttgtacaattatttttgacaacttttg 149  Q
    ||||||| |||||||||||||||||||||||||||    
T  16718314 aatgatatttgtacaattatttttgacaacttttg 16718348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 14876707 - 14876764
Alignment:
Q  112 agaaatgatacttgtacaattatttt-tgacaacttttgaaacaactatctctcatac 168  Q
    |||||||||| ||||||||  ||||| | |||| ||||||||||||||||||||||||    
T  14876707 agaaatgatatttgtacaaccattttcttacaatttttgaaacaactatctctcatac 14876764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 111 - 182
Target Start/End: Original strand, 22303203 - 22303272
Alignment:
Q  111 gagaaatgatacttgtacaatta-tttttgacaacttttgaaacaactatctctcatactcaaatgtattttt 182  Q
    ||||||||||| |||||||| || |||||||||||||||| ||||||   ||||||||||||||||| |||||    
T  22303203 gagaaatgatatttgtacaactattttttgacaacttttg-aacaac--actctcatactcaaatgttttttt 22303272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 109 - 186
Target Start/End: Original strand, 22966784 - 22966864
Alignment:
Q  109 aagagaaatgatacttgtacaatta-tttttgacaacttttgaaacaa--ctatctctcatactcaaatgtatttttattc 186  Q
    ||||||||||||| ||||||||  | ||||||| ||||||||||||||  || ||||||||| ||| |||| |||||||||    
T  22966784 aagagaaatgatatttgtacaaccactttttgataacttttgaaacaaccctctctctcatattcacatgtgtttttattc 22966864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 163
Target Start/End: Original strand, 39147766 - 39147818
Alignment:
Q  112 agaaatgatacttgtacaatta-tttttgacaacttttgaaacaactatctct 163  Q
    ||||||||||||||||||| || ||||| |||||||||| ||||||| |||||    
T  39147766 agaaatgatacttgtacaactatttttttacaacttttgtaacaactttctct 39147818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 134 - 185
Target Start/End: Complemental strand, 39284714 - 39284663
Alignment:
Q  134 tttttgacaacttttgaaacaactatctctcatactcaaatgtatttttatt 185  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  39284714 tttttgacaacttttgaaacaactctctctcatactcatatgtatttttatt 39284663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 186
Target Start/End: Complemental strand, 9327056 - 9326978
Alignment:
Q  111 gagaaatgatacttgtacaattattttt-gacaacttttgaaacaactatc--tctcatactcaaatgtatttttattc 186  Q
    ||||||||||| ||||||||| | |||| |||||||||||||||||| |||  ||||||||||| |||| |||||||||    
T  9327056 gagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccatctatctcatactcacatgtctttttattc 9326978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 171
Target Start/End: Complemental strand, 25641643 - 25641579
Alignment:
Q  109 aagagaaatgatacttgtacaattatttttgacaacttttgaaacaac--tatctctcatactca 171  Q
    ||||||||||||| ||| |||||||||||||||||||||||  |||||  | |||||||||||||    
T  25641643 aagagaaatgatatttgaacaattatttttgacaacttttgctacaactttgtctctcatactca 25641579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 186
Target Start/End: Original strand, 31143268 - 31143348
Alignment:
Q  109 aagagaaatgatacttgtacaattatttt-tgacaacttttgaaacaactatctctc--atactcaaatgtatttttattc 186  Q
    ||||||| ||||| ||||||||| ||||| ||||||||||||||||||  |||||||  ||||||| |||| |||||||||    
T  31143268 aagagaagtgatatttgtacaatcattttttgacaacttttgaaacaatcatctctctaatactcacatgtgtttttattc 31143348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 186
Target Start/End: Original strand, 3282534 - 3282610
Alignment:
Q  112 agaaatgatacttgtacaattatttt-tgacaacttttgaaacaactatc--tctcatactcaaatgtatttttattc 186  Q
    |||||||||| ||||| || |||||| |||||||||||||||||| ||||  ||||||||||| |||| |||||||||    
T  3282534 agaaatgatatttgtataagtattttttgacaacttttgaaacaattatctttctcatactcacatgt-tttttattc 3282610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 149
Target Start/End: Complemental strand, 6178496 - 6178458
Alignment:
Q  111 gagaaatgatacttgtacaattatttttgacaacttttg 149  Q
    ||||||||||| |||||||| ||||||||||||||||||    
T  6178496 gagaaatgatatttgtacaactatttttgacaacttttg 6178458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 148
Target Start/End: Complemental strand, 38957572 - 38957534
Alignment:
Q  110 agagaaatgatacttgtacaattatttttgacaactttt 148  Q
    |||||||||||| |||||||| |||||||||||||||||    
T  38957572 agagaaatgatatttgtacaactatttttgacaactttt 38957534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 109 - 186
Target Start/End: Complemental strand, 47187593 - 47187513
Alignment:
Q  109 aagagaaatgatacttgtacaatta-tttttgacaacttttgaaacaa--ctatctctcatactcaaatgtatttttattc 186  Q
    ||||| ||||||| ||||||||||| ||||| ||||||||||||||||  || ||||||||||| | |||| |||| ||||    
T  47187593 aagaggaatgatatttgtacaattactttttcacaacttttgaaacaaccctttctctcatacttacatgtgttttaattc 47187513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 110 - 171
Target Start/End: Original strand, 52939652 - 52939713
Alignment:
Q  110 agagaaatgatacttgtacaattatttttgacaacttttgaaacaactatctctcatactca 171  Q
    |||||||||||| ||| ||||  |||||| ||||||||||  |||||| |||||||||||||    
T  52939652 agagaaatgatatttgaacaaccattttttacaacttttgtgacaactttctctcatactca 52939713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 164
Target Start/End: Original strand, 48405408 - 48405464
Alignment:
Q  109 aagagaaatgatacttgtacaattatttt-tgacaacttttgaaacaactatctctc 164  Q
    ||||||||||||| ||||||||  ||||| |||||||||||| ||||||| ||||||    
T  48405408 aagagaaatgatatttgtacaaccattttgtgacaacttttgtaacaactttctctc 48405464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 109 - 186
Target Start/End: Original strand, 13592764 - 13592844
Alignment:
Q  109 aagagaaatgatacttgtacaattatttt-tgacaacttttgaaacaa--ctatctctcatactcaaatgtatttttattc 186  Q
    ||||||||||||| |||||||  |||||| ||||||||||||||||||  |||||||||||||||| |||| |||||||||    
T  13592764 aagagaaatgatatttgtacacctattttttgacaacttttgaaacaactctatctctcatactcacatgtgtttttattc 13592844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 109 - 186
Target Start/End: Complemental strand, 30170802 - 30170722
Alignment:
Q  109 aagagaaatgatacttgtacaatta-tttttgacaacttttgaaacaac--tatctctcatactcaaatgtatttttattc 186  Q
    ||||||||||||| ||||||||  | |||||||||||||||||||||||  | ||||||||||||| |||| |||||||||    
T  30170802 aagagaaatgatatttgtacaaccactttttgacaacttttgaaacaaccatctctctcatactcacatgtgtttttattc 30170722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 111 - 186
Target Start/End: Original strand, 21467384 - 21467460
Alignment:
Q  111 gagaaatgatacttgtacaattatttt-tgacaacttttgaaacaactatctctcatactcaaatgtatttttattc 186  Q
    ||||||||||| || |||| ||||||| ||||||||||| ||||||  |||||||||||||| |||| |||||||||    
T  21467384 gagaaatgatatttatacatttattttttgacaacttttaaaacaatcatctctcatactcacatgtgtttttattc 21467460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 182
Target Start/End: Complemental strand, 26629183 - 26629107
Alignment:
Q  109 aagagaaatgatacttgtacaatta-tttttgacaacttttgaaacaa--ctatctctcatactcaaatgtattttt 182  Q
    ||||||||||||| ||||||||  | ||||||||||||||||||||||  || ||||||||||||| |||| |||||    
T  26629183 aagagaaatgatatttgtacaaccactttttgacaacttttgaaacaaccctctctctcatactcacatgttttttt 26629107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 114 - 186
Target Start/End: Complemental strand, 13140369 - 13140296
Alignment:
Q  114 aaatgatacttgtacaattattttt-gacaacttttgaaacaactatctctcatactcaaatgtatttttattc 186  Q
    |||||||| |||||||  ||||||| ||||||||||||||||||| ||||||||||||| |||| |||||||||    
T  13140369 aaatgatatttgtacatctattttttgacaacttttgaaacaactctctctcatactcacatgtgtttttattc 13140296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 164
Target Start/End: Complemental strand, 50890146 - 50890091
Alignment:
Q  109 aagagaaatgatacttgtacaattatttttgacaacttttgaaacaactatctctc 164  Q
    ||||||||||||| |||||||| ||||||||||||||||||  |||||| ||||||    
T  50890146 aagagaaatgatatttgtacaactatttttgacaacttttgtgacaactttctctc 50890091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 186
Target Start/End: Original strand, 35206166 - 35206246
Alignment:
Q  109 aagagaaatgatacttgtacaatta-tttttgacaacttttgaaacaactatctctc--atactcaaatgtatttttattc 186  Q
    ||||||||||||  ||||||||| | ||||||| |||||||||||||||| ||||||  ||||||| |||| |||||||||    
T  35206166 aagagaaatgatgtttgtacaatcactttttgataacttttgaaacaactctctctcttatactcacatgtgtttttattc 35206246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 164
Target Start/End: Complemental strand, 336877 - 336825
Alignment:
Q  112 agaaatgatacttgtacaattatttttgacaacttttgaaacaactatctctc 164  Q
    |||||||||| ||||||||||||||||||||| |||||  |||||| ||||||    
T  336877 agaaatgatatttgtacaattatttttgacaatttttgtgacaactttctctc 336825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 186
Target Start/End: Original strand, 40293264 - 40293316
Alignment:
Q  134 tttttgacaacttttgaaacaactatctctcatactcaaatgtatttttattc 186  Q
    |||||||||| ||||||||||||  ||||||||||||| |||| |||||||||    
T  40293264 tttttgacaatttttgaaacaaccctctctcatactcacatgtgtttttattc 40293316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 161
Target Start/End: Complemental strand, 52372263 - 52372212
Alignment:
Q  111 gagaaatgatacttgtacaatta-tttttgacaacttttgaaacaactatct 161  Q
    ||||||||||| ||||||||||| ||||||| ||||||||||| ||||||||    
T  52372263 gagaaatgatatttgtacaattaatttttgataacttttgaaataactatct 52372212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 110 - 186
Target Start/End: Original strand, 51957518 - 51957595
Alignment:
Q  110 agagaaatgatacttgtacaatta-tttttgacaacttttgaaacaactatctctcatactcaaatgtatttttattc 186  Q
    |||||||||||| |||||||| || ||||| |||| | |||||| |||| |||||  |||||| ||||||||||||||    
T  51957518 agagaaatgatatttgtacaactactttttaacaattattgaaataactctctcttttactcacatgtatttttattc 51957595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 164
Target Start/End: Original strand, 961274 - 961330
Alignment:
Q  109 aagagaaatgatacttgtacaattattttt-gacaacttttgaaacaactatctctc 164  Q
    ||||||||| ||| ||||||||| |||||| || |||||||||||||||| ||||||    
T  961274 aagagaaataatatttgtacaataattttttgataacttttgaaacaactctctctc 961330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 164
Target Start/End: Original strand, 20760253 - 20760309
Alignment:
Q  109 aagagaaatgatacttgtacaatta-tttttgacaacttttgaaacaactatctctc 164  Q
    ||||||||||||| ||||||||||| ||||| ||||||||||  |||||||| ||||    
T  20760253 aagagaaatgatatttgtacaattattttttaacaacttttgtgacaactatttctc 20760309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 164
Target Start/End: Original strand, 20766644 - 20766700
Alignment:
Q  109 aagagaaatgatacttgtacaatta-tttttgacaacttttgaaacaactatctctc 164  Q
    ||||||||||||| ||||||||||| ||||| ||||||||||  |||||||| ||||    
T  20766644 aagagaaatgatatttgtacaattattttttaacaacttttgtgacaactatttctc 20766700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 171
Target Start/End: Original strand, 37997256 - 37997316
Alignment:
Q  111 gagaaatgatacttgtacaattatttttgacaacttttgaaacaactatctctcatactca 171  Q
    ||||||||||| ||| ||||  |||||| ||||||||||  |||||| |||||||||||||    
T  37997256 gagaaatgatatttgaacaaccattttttacaacttttgtgacaactttctctcatactca 37997316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 148
Target Start/End: Complemental strand, 38864809 - 38864769
Alignment:
Q  109 aagagaaatgatacttgtacaattatttt-tgacaactttt 148  Q
    ||||||||||||| ||||||||||||||| |||||||||||    
T  38864809 aagagaaatgatatttgtacaattattttgtgacaactttt 38864769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 155
Target Start/End: Original strand, 40760074 - 40760118
Alignment:
Q  112 agaaatgatacttgtacaat-tatttttgacaacttttgaaacaa 155  Q
    |||||| ||||||| ||||| ||||||||||||||||||||||||    
T  40760074 agaaataatacttgaacaatctatttttgacaacttttgaaacaa 40760118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 164
Target Start/End: Complemental strand, 44272883 - 44272828
Alignment:
Q  109 aagagaaatgatacttgtacaatta-tttttgacaacttttgaaacaactatctctc 164  Q
    ||||||||||||| |||||||| || ||||||||||||||| |||||||| ||||||    
T  44272883 aagagaaatgatatttgtacaactattttttgacaactttt-aaacaactttctctc 44272828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 186
Target Start/End: Original strand, 45652664 - 45652719
Alignment:
Q  133 atttttgacaacttttgaaacaa--ctatctctcatactcaaatgtatttttattc 186  Q
    |||||||||||||||||||||||  || | ||||||||||| |||| |||||||||    
T  45652664 atttttgacaacttttgaaacaaacctctatctcatactcacatgtgtttttattc 45652719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 149
Target Start/End: Original strand, 50050636 - 50050676
Alignment:
Q  109 aagagaaatgatacttgtacaattatttttgacaacttttg 149  Q
    ||||||||||||| ||| ||||||||||||||||| |||||    
T  50050636 aagagaaatgatatttgaacaattatttttgacaatttttg 50050676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 109 - 186
Target Start/End: Complemental strand, 30838438 - 30838358
Alignment:
Q  109 aagagaaatgatacttgtacaatta-tttttgacaacttttgaaacaac--tatctctcatactcaaatgtatttttattc 186  Q
    ||||||||||||| |||||||  || |||||||||||||||||||||||  | ||||||||||||| |||| |||||||||    
T  30838438 aagagaaatgatatttgtacatctactttttgacaacttttgaaacaaccatctctctcatactcacatgtgtttttattc 30838358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 109 - 176
Target Start/End: Complemental strand, 14780494 - 14780426
Alignment:
Q  109 aagagaaatgatacttgtacaatta-tttttgacaacttttgaaacaactatctctcatactcaaatgt 176  Q
    ||||||||||||| |||||||  || ||||||||||||||||||| |||| ||||||||||||| ||||    
T  14780494 aagagaaatgatatttgtacatctactttttgacaacttttgaaataactctctctcatactcacatgt 14780426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 186
Target Start/End: Complemental strand, 19645686 - 19645613
Alignment:
Q  114 aaatgatacttgtacaattat-ttttgacaacttttgaaacaactatctctcatactcaaatgtatttttattc 186  Q
    |||| ||| |||||||| ||| ||||||||||||||| || |||| ||||||||||||| |||| |||||||||    
T  19645686 aaattatatttgtacaactatattttgacaacttttgcaataactctctctcatactcacatgtgtttttattc 19645613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 111 - 164
Target Start/End: Complemental strand, 35634907 - 35634854
Alignment:
Q  111 gagaaatgatacttgtacaattatttttgacaacttttgaaacaactatctctc 164  Q
    ||||||||||| ||| ||||| |||||||||||||||||  |||||| ||||||    
T  35634907 gagaaatgatatttgaacaatcatttttgacaacttttgttacaactttctctc 35634854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 164
Target Start/End: Original strand, 611862 - 611918
Alignment:
Q  109 aagagaaatgatacttgtacaatta-tttttgacaacttttgaaacaactatctctc 164  Q
    ||||||||||||| ||| ||||||| ||||||||||||||||  |||||| ||||||    
T  611862 aagagaaatgatatttgaacaattactttttgacaacttttgtgacaactttctctc 611918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 164
Target Start/End: Complemental strand, 1080026 - 1079970
Alignment:
Q  108 gaagagaaatgatacttgtacaattatttttgacaacttttgaaacaactatctctc 164  Q
    |||||||||||||| ||| |||||||||||| |||| |||||  |||||| ||||||    
T  1080026 gaagagaaatgatatttgaacaattattttttacaatttttgtgacaactttctctc 1079970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 139
Target Start/End: Complemental strand, 9957265 - 9957233
Alignment:
Q  107 agaagagaaatgatacttgtacaattatttttg 139  Q
    ||||||||||||||| |||||||||||||||||    
T  9957265 agaagagaaatgatatttgtacaattatttttg 9957233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 171
Target Start/End: Original strand, 17063865 - 17063927
Alignment:
Q  111 gagaaatgatacttgtacaatta-tttttgacaacttttgaaacaac--tatctctcatactca 171  Q
    ||||||||||| ||||||||| | ||||||||||||||| |||||||  |||||||||||||||    
T  17063865 gagaaatgatatttgtacaatcattttttgacaactttt-aaacaactttatctctcatactca 17063927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 137
Target Start/End: Complemental strand, 21353588 - 21353560
Alignment:
Q  109 aagagaaatgatacttgtacaattatttt 137  Q
    |||||||||||||||||||||||||||||    
T  21353588 aagagaaatgatacttgtacaattatttt 21353560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 164
Target Start/End: Original strand, 29803223 - 29803278
Alignment:
Q  109 aagagaaatgatacttgtacaatta-tttttgacaacttttgaaacaactatctctc 164  Q
    ||||||||||||| |||||||| || ||||||||||||||| |||||||| ||||||    
T  29803223 aagagaaatgatatttgtacaactattttttgacaactttt-aaacaactttctctc 29803278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 182
Target Start/End: Original strand, 38097782 - 38097853
Alignment:
Q  114 aaatgatacttgtacaattatttttga-caacttttgaaacaacta--tctctcatactcaaatgtattttt 182  Q
    ||||||||  ||||||||||||||| | ||||||||||||||| ||  ||||||||||||| |||| |||||    
T  38097782 aaatgatatctgtacaattattttttaacaacttttgaaacaattatctctctcatactcacatgttttttt 38097853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 186
Target Start/End: Original strand, 43057434 - 43057513
Alignment:
Q  110 agagaaatgatacttgtacaatta-tttttgacaacttttgaaacaact--atctctcatactcaaatgtatttttattc 186  Q
    |||||||||||| ||||||||  | ||||||||||||||||||| ||||   ||||||||||||| || | |||||||||    
T  43057434 agagaaatgatatttgtacaaccactttttgacaacttttgaaataactccctctctcatactcacatatgtttttattc 43057513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 186
Target Start/End: Complemental strand, 11600 - 11546
Alignment:
Q  134 tttttgacaacttttgaaacaa--ctatctctcatactcaaatgtatttttattc 186  Q
    ||||||||||||||||||||||  || |||||||||||||||||| |||||||||    
T  11600 tttttgacaacttttgaaacaattctctctctcatactcaaatgtgtttttattc 11546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 149
Target Start/End: Complemental strand, 40231777 - 40231738
Alignment:
Q  110 agagaaatgatacttgtacaattatttttgacaacttttg 149  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  40231777 agagaaatgatatttgtacaattatttttgacaacttttg 40231738  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 186
Target Start/End: Original strand, 48395246 - 48395326
Alignment:
Q  109 aagagaaatgatacttgtacaatta-tttttgacaacttttgaaacaactatctctc--atactcaaatgtatttttattc 186  Q
    ||||||||||||| ||||||||  | |||||||||||||||||||||||| ||||||  ||||||| || | |||||||||    
T  48395246 aagagaaatgatatttgtacaaccactttttgacaacttttgaaacaactctctctcttatactcacatatgtttttattc 48395326  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 157
Target Start/End: Complemental strand, 49094813 - 49094764
Alignment:
Q  109 aagagaaatgatacttgtacaatta-tttttgacaacttttgaaacaact 157  Q
    |||||||||||||| |||||||||| |||||||||||||||| |||||||    
T  49094813 aagagaaatgatacatgtacaattactttttgacaacttttgtaacaact 49094764  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 164
Target Start/End: Complemental strand, 2849594 - 2849538
Alignment:
Q  109 aagagaaatgatacttgtacaattat-ttttgacaacttttgaaacaactatctctc 164  Q
    ||||||||||||| |||||||||||| |||||| ||||||||||| |||| ||||||    
T  2849594 aagagaaatgatatttgtacaattattttttgataacttttgaaataactctctctc 2849538  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 148
Target Start/End: Original strand, 27473102 - 27473141
Alignment:
Q  109 aagagaaatgatacttgtacaattatttttgacaactttt 148  Q
    ||||||||||||| || |||||||||||||||||||||||    
T  27473102 aagagaaatgatatttatacaattatttttgacaactttt 27473141  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 148
Target Start/End: Complemental strand, 45154611 - 45154573
Alignment:
Q  110 agagaaatgatacttgtacaattatttttgacaactttt 148  Q
    |||||||||||| |||||||| |||||||||||||||||    
T  45154611 agagaaatgatatttgtacaactatttttgacaactttt 45154573  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 136 - 186
Target Start/End: Complemental strand, 27306070 - 27306018
Alignment:
Q  136 tttgacaacttttgaaacaa--ctatctctcatactcaaatgtatttttattc 186  Q
    ||||||||||||||||||||  || ||||||||||||| |||| |||||||||    
T  27306070 tttgacaacttttgaaacaatcctctctctcatactcacatgtgtttttattc 27306018  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 107 - 148
Target Start/End: Original strand, 32933544 - 32933585
Alignment:
Q  107 agaagagaaatgatacttgtacaattatttttgacaactttt 148  Q
    ||||||||||||||| |||||||||||||| |||||| ||||    
T  32933544 agaagagaaatgatatttgtacaattatttgtgacaaatttt 32933585  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 143
Target Start/End: Original strand, 11325898 - 11325930
Alignment:
Q  111 gagaaatgatacttgtacaattatttttgacaa 143  Q
    ||||||||||| |||||||||||||||||||||    
T  11325898 gagaaatgatatttgtacaattatttttgacaa 11325930  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 186
Target Start/End: Complemental strand, 42663463 - 42663408
Alignment:
Q  133 atttttgacaacttttgaaacaa--ctatctctcatactcaaatgtatttttattc 186  Q
    ||||| |||||||||||||||||  |||| ||||||||||| |||| |||||||||    
T  42663463 attttcgacaacttttgaaacaatcctatatctcatactcacatgtgtttttattc 42663408  T

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Target: scaffold1625 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold1625
Description:

Target: scaffold1625; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 186
Target Start/End: Complemental strand, 854 - 774
Alignment:
Q  109 aagagaaatgatacttgtacaattattttt-gacaacttttgaaacaac--tatctctcatactcaaatgtatttttattc 186  Q
    ||||| ||||||| ||||||||| |||||| ||||||||||||||||||  | ||||||||||||| |||| |||| ||||    
T  854 aagaggaatgatatttgtacaatcattttttgacaacttttgaaacaaccatctctctcatactcacatgtgttttaattc 774  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 186
Target Start/End: Original strand, 38621 - 38674
Alignment:
Q  135 ttttgacaacttttgaaacaac--tatctctcatactcaaatgtatttttattc 186  Q
    ||||||||||||| ||||||||  | ||||||||||||| ||||||||||||||    
T  38621 ttttgacaactttggaaacaaccctctctctcatactcacatgtatttttattc 38674  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 186
Target Start/End: Original strand, 6256435 - 6256510
Alignment:
Q  111 gagaaatgatacttgtacaatta-tttttgacaacttttgaaacaactatctctcatactcaaatgtatttttattc 186  Q
    ||||||||||| ||||||||||| |||||||||| |||||||||||  |||||| ||| | | |||| |||||||||    
T  6256435 gagaaatgatatttgtacaattattttttgacaa-ttttgaaacaatcatctcttatatttacatgtgtttttattc 6256510  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 171
Target Start/End: Complemental strand, 8098666 - 8098606
Alignment:
Q  111 gagaaatgatacttgtacaattatttttgacaacttttgaaacaactatctctcatactca 171  Q
    ||||||||||| ||| ||||  |||||| ||||||||||  |||||| |||||||||||||    
T  8098666 gagaaatgatatttgaacaaccattttttacaacttttgtgacaactttctctcatactca 8098606  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 171
Target Start/End: Original strand, 10840722 - 10840781
Alignment:
Q  115 aatgatacttgtacaatta-tttttgacaacttttgaaacaa--ctatctctcatactca 171  Q
    ||||||| ||||||||||| |||||||||||||||| |||||  || |||||||||||||    
T  10840722 aatgatatttgtacaattattttttgacaacttttggaacaatcctctctctcatactca 10840781  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 186
Target Start/End: Original strand, 13093629 - 13093706
Alignment:
Q  114 aaatgatacttgtacaatta-tttttgacaacttttgaaacaa----ctatctctcatactcaaatgtatttttattc 186  Q
    |||||||| ||||||||  | ||||||||||||||||||||||    || ||||||||||||| |||| |||||||||    
T  13093629 aaatgatatttgtacaaccactttttgacaacttttgaaacaactctctctctctcatactcatatgtgtttttattc 13093706  T

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