View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1606_low_32 (Length: 211)
Name: NF1606_low_32
Description: NF1606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1606_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 16 - 192
Target Start/End: Complemental strand, 39943188 - 39943008
Alignment:
| Q |
16 |
attatacttgttaagataggaaagataaaggaacactgacacggaagcaagagaaagataaaaaagaataatcatatgcttaaggaataaaagatggaat |
115 |
Q |
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| T |
39943188 |
attatatttgttaagataggaaagataaaggaacactgacacggaagcaagagaaagataaaaaagaataatcatatgcttaaggaataaaagatggaat |
39943089 |
T |
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| Q |
116 |
at----gggttaaactgctgaaggcagtagcaaaaatagcaaaatggtctgtcttgatcacgtgctagtggtcatgactca |
192 |
Q |
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| T |
39943088 |
atgtaagggttaaactgctgaaggcagtagcaaaaatagcaaaatgatctgtcttgatcacgtgctagtggtcatgactca |
39943008 |
T |
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