View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1606_low_4 (Length: 672)
Name: NF1606_low_4
Description: NF1606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1606_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 556; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 556; E-Value: 0
Query Start/End: Original strand, 10 - 655
Target Start/End: Original strand, 42845781 - 42846405
Alignment:
| Q |
10 |
aagaatatacatgcacaagcagctaaggcagggaagagagaaaagacagaaatgacaatggattttttgtactgggaggctatgagccgtgcaaacgtca |
109 |
Q |
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| T |
42845781 |
aagaatatacatgcacaagcagctaaggcagggaagagagaaaagacagaaatgacaatggattttttgtactgggaggctatgagccgtgcaaacgtca |
42845880 |
T |
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| Q |
110 |
atgaaattgctgagcactcaaagaaagaggcatggataacatgcttgcagaacttattcagagtttcctacctgaatctactcgttgatgcacacagggc |
209 |
Q |
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| T |
42845881 |
atgaaattgctgagcactcaaagaaagaggcatggataacatgcttgcagaacttattcagagtttcctacctgaatctactcgttgatgcacacagggc |
42845980 |
T |
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| Q |
210 |
tactgatcttgtgtggctgagagatgtttcacctgactaagcaaaataattcatgctcagcataaggggatcgggaatgaaaagtgtggagtgcatgcga |
309 |
Q |
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| T |
42845981 |
tactgatcttgtgtggctgagagatgtttcacctgactaagcaaaataattcatgctcaacataaggggatcgggaatgaaaagtgtggagtgcatgcga |
42846080 |
T |
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| Q |
310 |
ccattctcgtcatcctcgttgtctctaaatacttttcactttcccttcattttcatcttctccttaaaatcatccgcatccatgttttctttgctaggct |
409 |
Q |
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| T |
42846081 |
ccattctcgtcatcctcgttgtctctaaatacttttcactttcccttcattttcatcatctccttaaaatcatctgcatccatgttttctttgctaggct |
42846180 |
T |
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| Q |
410 |
ctgcgagggaccactcccaattcgttacattctggatcatttccctttagatattggtcaaactcatgtctcatcacaagtaaaccaaactctgcatttt |
509 |
Q |
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| T |
42846181 |
ctgcgagggaccactcccaattcgttacattctg---------------gatattggtcaaactcatgtctcatcacaagtaaaccaaactctgcatttt |
42846265 |
T |
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| Q |
510 |
caaaattacaatcaatatcttcaaaattattcaaaaagctatcactgcgaattcaaaaaataacgtgggcgtgaatagtcacaaaataacctatcaatat |
609 |
Q |
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| T |
42846266 |
caaaattacaatcaatatcttcaaaattattcaaaaagctatcactgcgaattcaaaaaataacgtgggcgtgaatagtcacaaaataacc-atcaatat |
42846364 |
T |
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| Q |
610 |
cttcaaaattacataggcatttatattacaagttatcattgaatat |
655 |
Q |
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| T |
42846365 |
cttcaaaattacataggcat-----ttacaagttatcattgaatat |
42846405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 317 - 569
Target Start/End: Original strand, 42825334 - 42825581
Alignment:
| Q |
317 |
cgtcatcctcgttgtctctaaatacttttcactttcccttcattttcatcttctccttaaaatcatccgcatccatgttttctttgctaggctctgcgag |
416 |
Q |
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| T |
42825334 |
cgtcatcctcgttgtctctaaatactttccgctttccctttattttccttttctcctcaaaatcatcctcatcctcactttctttgctaggctcctcgag |
42825433 |
T |
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| Q |
417 |
ggaccactcccaattcgttacattctggatcatttccctttagatattggtcaaactcatgtctcatcacaagtaaaccaaactctgcattttcaaaatt |
516 |
Q |
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| T |
42825434 |
gaaccactcccaattctccacattccggatcatg-ccctttggatactggtcaaactcatgcctcataacaagaaaaccaaactctgcattttcaaaatt |
42825532 |
T |
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| Q |
517 |
acaatcaatatcttcaaaattattcaaaaagctatcactgcgaattcaaaaaa |
569 |
Q |
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| | | || |||||| ||| | |||||||||||||| |||||||||||| |
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| T |
42825533 |
a----ctgtttcatcaaaagtatcccaaaagctatcactgtgaattcaaaaaa |
42825581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 162
Target Start/End: Original strand, 41979923 - 41980056
Alignment:
| Q |
30 |
agctaaggcagggaagagagaaaagacagaaatgacaatggattttttgtactgggaggctatgagccgtgcaaacgtcaatgaaattgctga-gcactc |
128 |
Q |
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| T |
41979923 |
agctacggctgggaagagagaaaagacagaaagcaacatggactcattggactgggaagctgtgagacgggcaaacgtcaaggaaattgctgatgcaatc |
41980022 |
T |
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| Q |
129 |
aaagaaagaggcatggataacatgcttgcagaac |
162 |
Q |
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| T |
41980023 |
aaagagaggggcatgaacaacatgcttgctgaac |
41980056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 180 - 254
Target Start/End: Original strand, 41980173 - 41980247
Alignment:
| Q |
180 |
cctgaatctactcgttgatgcacacagggctactgatcttgtgtggctgagagatgtttcacctgactaagcaaa |
254 |
Q |
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| T |
41980173 |
cctgaatctactcgttgaaaaacacggggctattgatctcgagtggcttagagatgttccacctgaccaagcaaa |
41980247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 257 - 302
Target Start/End: Original strand, 41980450 - 41980495
Alignment:
| Q |
257 |
aattcatgctcagcataaggggatcgggaatgaaaagtgtggagtg |
302 |
Q |
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| T |
41980450 |
aattcttgctcagcataaggggattgggattgaaaagtgtggagtg |
41980495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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