View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1606_low_5 (Length: 562)

Name: NF1606_low_5
Description: NF1606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1606_low_5
NF1606_low_5
[»] chr7 (18 HSPs)
chr7 (208-543)||(21688755-21689093)
chr7 (15-177)||(21688620-21688782)
chr7 (441-537)||(21791601-21791697)
chr7 (442-519)||(21791376-21791453)
chr7 (441-533)||(21663654-21663746)
chr7 (442-534)||(21681203-21681295)
chr7 (468-543)||(21713808-21713883)
chr7 (356-534)||(21740544-21740720)
chr7 (205-292)||(15964183-15964270)
chr7 (205-292)||(21496772-21496859)
chr7 (441-534)||(21622648-21622741)
chr7 (436-534)||(21784518-21784615)
chr7 (468-534)||(21991390-21991456)
chr7 (466-534)||(21784661-21784730)
chr7 (468-534)||(21725554-21725620)
chr7 (442-534)||(21651681-21651781)
chr7 (468-534)||(21771618-21771684)
chr7 (468-543)||(21639303-21639379)
[»] chr4 (10 HSPs)
chr4 (205-292)||(29515263-29515350)
chr4 (205-292)||(36892238-36892325)
chr4 (205-297)||(4986331-4986423)
chr4 (206-285)||(11907430-11907509)
chr4 (238-292)||(17523417-17523471)
chr4 (211-289)||(52627371-52627449)
chr4 (244-292)||(1937839-1937887)
chr4 (248-292)||(4889931-4889975)
chr4 (246-297)||(26095330-26095381)
chr4 (246-292)||(18196293-18196339)
[»] chr2 (2 HSPs)
chr2 (205-292)||(37440441-37440528)
chr2 (215-292)||(9612445-9612522)
[»] chr1 (6 HSPs)
chr1 (205-291)||(19025081-19025166)
chr1 (205-298)||(46545095-46545188)
chr1 (207-292)||(6165505-6165590)
chr1 (205-298)||(2619997-2620090)
chr1 (205-275)||(13120218-13120288)
chr1 (247-292)||(25080316-25080361)
[»] chr8 (3 HSPs)
chr8 (205-289)||(41378402-41378486)
chr8 (238-285)||(22014011-22014058)
chr8 (207-297)||(18887679-18887769)
[»] chr6 (4 HSPs)
chr6 (205-292)||(31895016-31895103)
chr6 (215-292)||(32089840-32089917)
chr6 (205-292)||(31393287-31393374)
chr6 (205-292)||(21279668-21279755)
[»] chr5 (3 HSPs)
chr5 (211-292)||(19288057-19288138)
chr5 (216-290)||(22962836-22962910)
chr5 (239-288)||(17528472-17528521)
[»] scaffold0259 (1 HSPs)
scaffold0259 (205-292)||(7184-7271)
[»] chr3 (3 HSPs)
chr3 (205-292)||(41073342-41073429)
chr3 (238-297)||(35092207-35092266)
chr3 (253-289)||(31318558-31318594)
[»] scaffold0169 (1 HSPs)
scaffold0169 (211-292)||(27483-27564)
[»] scaffold0182 (1 HSPs)
scaffold0182 (468-534)||(34192-34258)
[»] scaffold0002 (2 HSPs)
scaffold0002 (246-292)||(284707-284753)
scaffold0002 (246-292)||(291116-291162)
[»] scaffold0174 (1 HSPs)
scaffold0174 (237-284)||(33752-33799)


Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 208 - 543
Target Start/End: Original strand, 21688755 - 21689093
Alignment:
Q  208 ggtttattccgtcagtaa--ttattgaggatttaaattcctcagtaatgcaattttgaattggttagtaatttgaggaattcttgtaatgatcgcaaata 305  Q
    |||||||||| ||||||   ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||    
T  21688755 ggtttattccttcagtagcgttattgagggtttaaatgcctcagtaatgcaattttgaattggttagtaatttgagaaattcttgtagtgatcgcaaata 21688854  T
Q  306 actttataatgttttcnnnnnnngacgcataaacggtctgttgcaagttattatatatttaaacgtgatgcttagcccgtggtaaaacgttaactatgtt 405  Q
    ||||||||||||||||       |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  21688855 actttataatgttttctttttttgacgcataaacggtctgttgcaagttattatatattaaaacgtgatgcttagcccgtggaaaaacgttaactatgtt 21688954  T
Q  406 tctaatcctaaataatgaaaattcaaggaagaatt-aaaggagaagccgcatggcacacatgattaaattctagaacagtaaaagcaaatatcccttttc 504  Q
    ||| |||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21688955 tcttatcctaaagaatgaaaatccaaggaagaattaaaaggagaagccgcatggcacacatgattaaattctagaacagtaaaagcaaatatcccttttc 21689054  T
Q  505 catgaattttacttttcttctccattgagttaagcggtg 543  Q
    |||||||||||||||||||| ||||||||||||| ||||    
T  21689055 catgaattttacttttcttccccattgagttaagtggtg 21689093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 15 - 177
Target Start/End: Original strand, 21688620 - 21688782
Alignment:
Q  15 aattttttcttatttttcgatacaaacaacatccgctcagtaatgccaagaatccctcggtaattcaaggtagattggtcatttacattactgacggaat 114  Q
    |||||||||||||||||| ||||||  |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  21688620 aattttttcttatttttcaatacaagtaacaaccgctcagtaatgccaagaatccctcagtaattcaaggtagattggtcatttacattactgacggaat 21688719  T
Q  115 tatctgtcagtaaagtttttgtctgaggtattgagggtttattccttcagtagtgttactgag 177  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||    
T  21688720 tatctgtcagtaaagtttttgtctaaggtattgagggtttattccttcagtagcgttattgag 21688782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 441 - 537
Target Start/End: Original strand, 21791601 - 21791697
Alignment:
Q  441 aaaggagaagccgcatggcacacatgattaaattctagaacagtaaaagcaaatatcccttttccatgaattttacttttcttctccattgagttaa 537  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21791601 aaaggagaagccgcatggcacacatgattaaattctagaacagtaaaagcaaatatcccttttccatgaattttacttttcttctccattgagttaa 21791697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 442 - 519
Target Start/End: Original strand, 21791376 - 21791453
Alignment:
Q  442 aaggagaagccgcatggcacacatgattaaattctagaacagtaaaagcaaatatcccttttccatgaattttacttt 519  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  21791376 aaggagaagctgcatggcacacatgattaaattctagaacagtaaaagcaaagatcctttttccatgaattttacttt 21791453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 441 - 533
Target Start/End: Original strand, 21663654 - 21663746
Alignment:
Q  441 aaaggagaagccgcatggcacacatgattaaattctagaacagtaaaagcaaatatcccttttccatgaattttacttttcttctccattgag 533  Q
    ||||||||||||||||||  |||||  |||||||||||||||||||||||||  ||||  ||||||||||||||||||||||| |||||||||    
T  21663654 aaaggagaagccgcatggtgcacatagttaaattctagaacagtaaaagcaatgatcctatttccatgaattttacttttcttgtccattgag 21663746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 442 - 534
Target Start/End: Original strand, 21681203 - 21681295
Alignment:
Q  442 aaggagaagccgcatggcacacatgattaaattctagaacagtaaaagcaaatatcccttttccatgaattttacttttcttctccattgagt 534  Q
    |||||||||||||||||||||||   ||||||||||||| ||||| |||||| ||||  ||||||||||||||||||||||| ||||||||||    
T  21681203 aaggagaagccgcatggcacacagagttaaattctagaatagtaacagcaaagatccaatttccatgaattttacttttcttgtccattgagt 21681295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 468 - 543
Target Start/End: Original strand, 21713808 - 21713883
Alignment:
Q  468 ttaaattctagaacagtaaaagcaaatatcccttttccatgaattttacttttcttctccattgagttaagcggtg 543  Q
    |||||||||||||||||||||||||| |||  |||||||||||||||||||||||| |||||||||| ||||||||    
T  21713808 ttaaattctagaacagtaaaagcaaagatcttttttccatgaattttacttttcttgtccattgagtaaagcggtg 21713883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 356 - 534
Target Start/End: Original strand, 21740544 - 21740720
Alignment:
Q  356 ttatatatttaaacgtgatgcttagcccgtggtaaaacgttaactatgtttctaatcctaaataatgaaaattcaaggaagaattaaaggagaagccgca 455  Q
    ||||||||| | |||||||||||||||||||| |||||||| | || ||||||||||||||  | | ||||| |||||||||| ||||  |||||  ||     
T  21740544 ttatatattaagacgtgatgcttagcccgtggaaaaacgtttattaggtttctaatcctaaggagttaaaatccaaggaagaaataaa--agaagaagct 21740641  T
Q  456 tggcacacatgattaaattctagaacagtaaaagcaaatatcccttttccatgaattttacttttcttctccattgagt 534  Q
    ||         ||||||||||||||||||||||||||  |||| |||||||||||||||||||||||| ||||||||||    
T  21740642 tgcgttgttacattaaattctagaacagtaaaagcaatgatcctttttccatgaattttacttttcttgtccattgagt 21740720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 205 - 292
Target Start/End: Complemental strand, 15964270 - 15964183
Alignment:
Q  205 gaaggtttattccgtcagtaattattgaggatttaaattcctcagtaatgcaattttgaattggttagtaatttgaggaattcttgta 292  Q
    ||||| ||||||| |||||||||| ||||| | ||||| ||| |||||||||||||||||||||||||||| ||| ||||||||||||    
T  15964270 gaagggttattccatcagtaattaatgagggtctaaatccctaagtaatgcaattttgaattggttagtaaattggggaattcttgta 15964183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 205 - 292
Target Start/End: Original strand, 21496772 - 21496859
Alignment:
Q  205 gaaggtttattccgtcagtaattattgaggatttaaattcctcagtaatgcaattttgaattggttagtaatttgaggaattcttgta 292  Q
    |||||||||||||| ||||||||||||||| | ||||| |||||||||||||||||||| ||||||| ||||||   |||||||||||    
T  21496772 gaaggtttattccgccagtaattattgagggtctaaatccctcagtaatgcaattttgagttggttactaatttagagaattcttgta 21496859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 441 - 534
Target Start/End: Original strand, 21622648 - 21622741
Alignment:
Q  441 aaaggagaagccgcatggcacacatgattaaattctagaacagtaaaagcaaatatcccttttccatgaattttacttttcttctccattgagt 534  Q
    |||||||||||||||||| ||||||  ||||||| ||||||||| |||||||| || |  ||||||||||||||||||||||| ||||| ||||    
T  21622648 aaaggagaagccgcatggtacacatagttaaattgtagaacagtgaaagcaaagatactatttccatgaattttacttttcttgtccatcgagt 21622741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 436 - 534
Target Start/End: Original strand, 21784518 - 21784615
Alignment:
Q  436 gaattaaaggagaagccgcatggcacacatgattaaattctagaacagtaaaagcaaatatcccttttccatgaattttacttttcttctccattgagt 534  Q
    |||| |||||||||||||||||| | |||   |||||||  |||||||||||||||||||||| |||||| ||||||||||||||||| |||| |||||    
T  21784518 gaataaaaggagaagccgcatggta-acagagttaaattaaagaacagtaaaagcaaatatcctttttccgtgaattttacttttcttgtccaatgagt 21784615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 468 - 534
Target Start/End: Original strand, 21991390 - 21991456
Alignment:
Q  468 ttaaattctagaacagtaaaagcaaatatcccttttccatgaattttacttttcttctccattgagt 534  Q
    ||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||| || |||||||    
T  21991390 ttaaattctagaacagtgaaagcaaatatcctttttccatgaatttcacttttcttgtctattgagt 21991456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 466 - 534
Target Start/End: Original strand, 21784661 - 21784730
Alignment:
Q  466 gattaaattctagaacagtaaaagcaaata-tcccttttccatgaattttacttttcttctccattgagt 534  Q
    |||||||||  ||||||||||||||||||| ||| |||||| ||||||||||||||||| ||||||||||    
T  21784661 gattaaattaaagaacagtaaaagcaaataatcctttttccgtgaattttacttttcttgtccattgagt 21784730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 468 - 534
Target Start/End: Original strand, 21725554 - 21725620
Alignment:
Q  468 ttaaattctagaacagtaaaagcaaatatcccttttccatgaattttacttttcttctccattgagt 534  Q
    |||||||  |||||||||||||||||||||| |||||  ||||||||||||||||| |||| |||||    
T  21725554 ttaaattaaagaacagtaaaagcaaatatcctttttctgtgaattttacttttcttgtccaatgagt 21725620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 442 - 534
Target Start/End: Original strand, 21651681 - 21651781
Alignment:
Q  442 aaggagaagccgcatggcacacatgattaaattctagaacagtaaaagca--------aatatcccttttccatgaattttacttttcttctccattgag 533  Q
    |||||||||| |||||  ||||||  ||||||||||||||||||||||||        || |||| ||||||||||||||||| |||||| |||||||||    
T  21651681 aaggagaagctgcatgaaacacatagttaaattctagaacagtaaaagcattgaagcaaagatcctttttccatgaattttacatttcttgtccattgag 21651780  T
Q  534 t 534  Q
    |    
T  21651781 t 21651781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 468 - 534
Target Start/End: Original strand, 21771618 - 21771684
Alignment:
Q  468 ttaaattctagaacagtaaaagcaaatatcccttttccatgaattttacttttcttctccattgagt 534  Q
    |||||||  ||||||||||||| |||||||| |||||  ||||||||||||||||| |||| |||||    
T  21771618 ttaaattaaagaacagtaaaagaaaatatcctttttctgtgaattttacttttcttgtccaatgagt 21771684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 468 - 543
Target Start/End: Original strand, 21639303 - 21639379
Alignment:
Q  468 ttaaattctagaa-cagtaaaagcaaatatcccttttccatgaattttacttttcttctccattgagttaagcggtg 543  Q
    ||||||||||||| ||||||||||||| |||| |||| ||| |||||||||| | || | |||||||| ||| ||||    
T  21639303 ttaaattctagaaacagtaaaagcaaagatccttttttcattaattttacttattttgtacattgagtaaagtggtg 21639379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 205 - 292
Target Start/End: Original strand, 29515263 - 29515350
Alignment:
Q  205 gaaggtttattccgtcagtaattattgaggatttaaattcctcagtaatgcaattttgaattggttagtaatttgaggaattcttgta 292  Q
    |||||||||||||| ||||||||| ||||| | ||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  29515263 gaaggtttattccgccagtaattactgagggtctaaatccctcagtaatgtaattttgaattggttagtaaattgaggaattcttgta 29515350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 205 - 292
Target Start/End: Complemental strand, 36892325 - 36892238
Alignment:
Q  205 gaaggtttattccgtcagtaattattgaggatttaaattcctcagtaatgcaattttgaattggttagtaatttgaggaattcttgta 292  Q
    |||| |||||||| ||||| |||||||||| | ||||||||||||||||| |||||||| |||||||| |||||||||||||||||||    
T  36892325 gaagttttattccttcagtgattattgagggtctaaattcctcagtaatgtaattttgatttggttagaaatttgaggaattcttgta 36892238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 205 - 297
Target Start/End: Complemental strand, 4986423 - 4986331
Alignment:
Q  205 gaaggtttattccgtcagtaattattgaggatttaaattcctcagtaatgcaattttgaattggttagtaatttgaggaattcttgtaatgat 297  Q
    |||||||||||||| ||||||||||| ||| | ||||| ||||| |||||  ||||||||||||||||||| ||| |||||||||||| ||||    
T  4986423 gaaggtttattccgccagtaattattaagggtctaaatccctcactaatgtcattttgaattggttagtaaattggggaattcttgtagtgat 4986331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 206 - 285
Target Start/End: Complemental strand, 11907509 - 11907430
Alignment:
Q  206 aaggtttattccgtcagtaattattgaggatttaaattcctcagtaatgcaattttgaattggttagtaatttgaggaat 285  Q
    |||||||||| |||||||||||| ||| | | ||||||| | |||||||||||||||||||||||||||||||| |||||    
T  11907509 aaggtttatttcgtcagtaattactgatggtctaaattcttgagtaatgcaattttgaattggttagtaatttggggaat 11907430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 238 - 292
Target Start/End: Original strand, 17523417 - 17523471
Alignment:
Q  238 taaattcctcagtaatgcaattttgaattggttagtaatttgaggaattcttgta 292  Q
    ||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  17523417 taaatccctcagtaatgtaattttgatttggttagtaatttgaggaattcttgta 17523471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 211 - 289
Target Start/End: Complemental strand, 52627449 - 52627371
Alignment:
Q  211 ttattccgtcagtaattattgaggatttaaattcctcagtaatgcaattttgaattggttagtaatttgaggaattctt 289  Q
    ||||||||  |||||||| ||||| | ||||| |||| ||||||||||||||||||||||||||| | | |||||||||    
T  52627449 ttattccgctagtaattactgagggtctaaatccctcggtaatgcaattttgaattggttagtaaataggggaattctt 52627371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 244 - 292
Target Start/End: Original strand, 1937839 - 1937887
Alignment:
Q  244 cctcagtaatgcaattttgaattggttagtaatttgaggaattcttgta 292  Q
    |||||||||||||||||| ||||||||||||| ||| ||||||||||||    
T  1937839 cctcagtaatgcaattttaaattggttagtaaattggggaattcttgta 1937887  T

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Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 248 - 292
Target Start/End: Original strand, 4889931 - 4889975
Alignment:
Q  248 agtaatgcaattttgaattggttagtaatttgaggaattcttgta 292  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||    
T  4889931 agtaatgcaattttgaattggttagtaaattggggaattcttgta 4889975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 246 - 297
Target Start/End: Original strand, 26095330 - 26095381
Alignment:
Q  246 tcagtaatgcaattttgaattggttagtaatttgaggaattcttgtaatgat 297  Q
    |||||||||||||||||||||||||||||  ||| |||||||||||| ||||    
T  26095330 tcagtaatgcaattttgaattggttagtagattggggaattcttgtagtgat 26095381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 246 - 292
Target Start/End: Original strand, 18196293 - 18196339
Alignment:
Q  246 tcagtaatgcaattttgaattggttagtaatttgaggaattcttgta 292  Q
    |||||||||||||||| ||||||||| |||||||| |||||||||||    
T  18196293 tcagtaatgcaattttcaattggttactaatttgatgaattcttgta 18196339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 205 - 292
Target Start/End: Complemental strand, 37440528 - 37440441
Alignment:
Q  205 gaaggtttattccgtcagtaattattgaggatttaaattcctcagtaatgcaattttgaattggttagtaatttgaggaattcttgta 292  Q
    ||||||||||||||||||||||||  |||| | ||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||    
T  37440528 gaaggtttattccgtcagtaattaccgagggtctaaatccctaagtaatgcaattttgaattggttagtaaattgaggaattcttgta 37440441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 215 - 292
Target Start/End: Complemental strand, 9612522 - 9612445
Alignment:
Q  215 tccgtcagtaattattgaggatttaaattcctcagtaatgcaattttgaattggttagtaatttgaggaattcttgta 292  Q
    |||||||||||||| ||| | ||||||| ||||| |||||||||||| |||||||||||||||||  |||||||||||    
T  9612522 tccgtcagtaattactgacggtttaaatccctcactaatgcaattttaaattggttagtaatttggagaattcttgta 9612445  T

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Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 205 - 291
Target Start/End: Complemental strand, 19025166 - 19025081
Alignment:
Q  205 gaaggtttattccgtcagtaattattgaggatttaaattcctcagtaatgcaattttgaattggttagtaatttgaggaattcttgt 291  Q
    |||||||||||| ||| ||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||| ||||| ||||||    
T  19025166 gaaggtttattctgtc-gtaattattgaggatctaaatccctcagtaatgcaattttgagttggttagtaatttaaggaaatcttgt 19025081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 205 - 298
Target Start/End: Complemental strand, 46545188 - 46545095
Alignment:
Q  205 gaaggtttattccgtcagtaattattgaggatttaaattcctcagtaatgcaattttgaattggttagtaatttgaggaattcttgtaatgatc 298  Q
    |||| ||||||||| |||||| ||  |||| | ||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  46545188 gaagatttattccgccagtaaatacagagggtctaaatccctcagtaatgcaattttgaattggttagtaaattgaggaattcttgtagtgatc 46545095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 207 - 292
Target Start/End: Original strand, 6165505 - 6165590
Alignment:
Q  207 aggtttattccgtcagtaattattgaggatttaaattcctcagtaatgcaattttgaattggttagtaatttgaggaattcttgta 292  Q
    |||||| ||||||||||||||| |||||   ||||| ||||||| ||||||||||||||||||||||||||||  |||||||||||    
T  6165505 aggtttgttccgtcagtaattactgagggcctaaatccctcagtgatgcaattttgaattggttagtaatttggagaattcttgta 6165590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 205 - 298
Target Start/End: Complemental strand, 2620090 - 2619997
Alignment:
Q  205 gaaggtttattccgtcagtaattattgaggatttaaattcctcagtaatgcaattttgaattggttagtaatttgaggaattcttgtaatgatc 298  Q
    |||||||||||||| ||||||||| ||||| | ||||| ||||| ||||||||| ||| |||||||||||  ||| |||||||||||| |||||    
T  2620090 gaaggtttattccgccagtaattactgagggtctaaatccctcaataatgcaatattggattggttagtatattggggaattcttgtagtgatc 2619997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 205 - 275
Target Start/End: Complemental strand, 13120288 - 13120218
Alignment:
Q  205 gaaggtttattccgtcagtaattattgaggatttaaattcctcagtaatgcaattttgaattggttagtaa 275  Q
    |||||||||||||| ||||||||| ||||| | ||||| |||||   |||||||||||||||| |||||||    
T  13120288 gaaggtttattccgccagtaattactgagggtctaaatccctcatgtatgcaattttgaattgattagtaa 13120218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 292
Target Start/End: Original strand, 25080316 - 25080361
Alignment:
Q  247 cagtaatgcaattttgaattggttagtaatttgaggaattcttgta 292  Q
    |||||||||||||||| ||||||||||||||||  || ||||||||    
T  25080316 cagtaatgcaattttggattggttagtaatttggagacttcttgta 25080361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 4e-21; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 205 - 289
Target Start/End: Complemental strand, 41378486 - 41378402
Alignment:
Q  205 gaaggtttattccgtcagtaattattgaggatttaaattcctcagtaatgcaattttgaattggttagtaatttgaggaattctt 289  Q
    |||||||||||||| ||||||||||||||| | ||||||||| |||||| ||||||||||||||||| ||  |||||||||||||    
T  41378486 gaaggtttattccgccagtaattattgagggtctaaattccttagtaatacaattttgaattggttaatatattgaggaattctt 41378402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 238 - 285
Target Start/End: Complemental strand, 22014058 - 22014011
Alignment:
Q  238 taaattcctcagtaatgcaattttgaattggttagtaatttgaggaat 285  Q
    ||||| |||||||||| ||||||||||||||||||||||||| |||||    
T  22014058 taaatccctcagtaattcaattttgaattggttagtaatttggggaat 22014011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 207 - 297
Target Start/End: Original strand, 18887679 - 18887769
Alignment:
Q  207 aggtttattccgtcagtaattattgaggatttaaattcctcagtaatgcaattttgaattggttagtaatttgaggaattcttgtaatgat 297  Q
    |||||||||||| ||||| ||| | | | | ||||| ||| |||||||||||||||||||||||||||| | | | |||||||||| ||||    
T  18887679 aggtttattccggcagtagttactaaaggtctaaatccctaagtaatgcaattttgaattggttagtaaatcgggaaattcttgtagtgat 18887769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 205 - 292
Target Start/End: Complemental strand, 31895103 - 31895016
Alignment:
Q  205 gaaggtttattccgtcagtaattattgaggatttaaattcctcagtaatgcaattttgaattggttagtaatttgaggaattcttgta 292  Q
    ||||| |||||||||||||||||| ||||| | ||||| ||||| ||||||||||||||||||||| |||| |||| |||||||||||    
T  31895103 gaagggttattccgtcagtaattactgagggtctaaatccctcaataatgcaattttgaattggttggtaaattgatgaattcttgta 31895016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 215 - 292
Target Start/End: Complemental strand, 32089917 - 32089840
Alignment:
Q  215 tccgtcagtaattattgaggatttaaattcctcagtaatgcaattttgaattggttagtaatttgaggaattcttgta 292  Q
    |||||||||||| | ||||||| ||||| |||||||||||||||||||| |||||||||||||||  |||||||||||    
T  32089917 tccgtcagtaatcactgaggatctaaatccctcagtaatgcaattttgagttggttagtaatttggagaattcttgta 32089840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 205 - 292
Target Start/End: Original strand, 31393287 - 31393374
Alignment:
Q  205 gaaggtttattccgtcagtaattattgaggatttaaattcctcagtaatgcaattttgaattggttagtaatttgaggaattcttgta 292  Q
    |||||||||||||| ||||||||| ||||| | ||||| ||||||||||||||| ||| |||||||||||  ||| ||||||||||||    
T  31393287 gaaggtttattccgccagtaattactgagggtctaaatccctcagtaatgcaatattggattggttagtatattggggaattcttgta 31393374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 205 - 292
Target Start/End: Original strand, 21279668 - 21279755
Alignment:
Q  205 gaaggtttattccgtcagtaattattgaggatttaaattcctcagtaatgcaattttgaattggttagtaatttgaggaattcttgta 292  Q
    |||||||||||||  ||||||||| ||||| | ||||| ||||||||||| |||||||||||| ||||||| ||  ||||||||||||    
T  21279668 gaaggtttattccaccagtaattactgagggtctaaatccctcagtaatgtaattttgaattgattagtaaatttgggaattcttgta 21279755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 211 - 292
Target Start/End: Original strand, 19288057 - 19288138
Alignment:
Q  211 ttattccgtcagtaattattgaggatttaaattcctcagtaatgcaattttgaattggttagtaatttgaggaattcttgta 292  Q
    |||||||||||||||||| ||||| | ||||| ||||||||||| |||||||||||| ||||||| | ||||||||||||||    
T  19288057 ttattccgtcagtaattactgagggtctaaatccctcagtaatgtaattttgaattgattagtaaatagaggaattcttgta 19288138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 216 - 290
Target Start/End: Complemental strand, 22962910 - 22962836
Alignment:
Q  216 ccgtcagtaattattgaggatttaaattcctcagtaatgcaattttgaattggttagtaatttgaggaattcttg 290  Q
    ||||||||||||||||| | |||||||  |||| ||||||||||||||||| ||||||||||||  |||||||||    
T  22962910 ccgtcagtaattattgaaggtttaaatctctcattaatgcaattttgaattagttagtaatttggagaattcttg 22962836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 239 - 288
Target Start/End: Original strand, 17528472 - 17528521
Alignment:
Q  239 aaattcctcagtaatgcaattttgaattggttagtaatttgaggaattct 288  Q
    |||| |||||||||||||||||||||||||||||||| ||| ||||||||    
T  17528472 aaatccctcagtaatgcaattttgaattggttagtaaattggggaattct 17528521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 205 - 292
Target Start/End: Complemental strand, 7271 - 7184
Alignment:
Q  205 gaaggtttattccgtcagtaattattgaggatttaaattcctcagtaatgcaattttgaattggttagtaatttgaggaattcttgta 292  Q
    |||||||||||||| ||||||||| ||||  | ||||| |||||||||||||||||||||||||||| ||  ||| ||||||||||||    
T  7271 gaaggtttattccgccagtaattactgagagtctaaatccctcagtaatgcaattttgaattggttaatatattggggaattcttgta 7184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 9e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 205 - 292
Target Start/End: Complemental strand, 41073429 - 41073342
Alignment:
Q  205 gaaggtttattccgtcagtaattattgaggatttaaattcctcagtaatgcaattttgaattggttagtaatttgaggaattcttgta 292  Q
    |||||||||||||| ||||||||| ||||| | ||||| || |||||||||||| ||| |||||||||||  ||| ||||||||||||    
T  41073429 gaaggtttattccgccagtaattactgagggtctaaatcccacagtaatgcaatattggattggttagtatattggggaattcttgta 41073342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 238 - 297
Target Start/End: Original strand, 35092207 - 35092266
Alignment:
Q  238 taaattcctcagtaatgcaattttgaattggttagtaatttgaggaattcttgtaatgat 297  Q
    ||||| |||| ||||||||||||||||||||||||||| ||| | |||||||||| ||||    
T  35092207 taaatccctcggtaatgcaattttgaattggttagtaaattgggaaattcttgtagtgat 35092266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 253 - 289
Target Start/End: Complemental strand, 31318594 - 31318558
Alignment:
Q  253 tgcaattttgaattggttagtaatttgaggaattctt 289  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  31318594 tgcaattttgaattagttagtaatttaaggaattctt 31318558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 211 - 292
Target Start/End: Complemental strand, 27564 - 27483
Alignment:
Q  211 ttattccgtcagtaattattgaggatttaaattcctcagtaatgcaattttgaattggttagtaatttgaggaattcttgta 292  Q
    ||||||||  |||||||| ||| | | | |||||||||||||||||||||||||||||||||||| | | ||||||||||||    
T  27564 ttattccgctagtaattactgatggtctgaattcctcagtaatgcaattttgaattggttagtaaataggggaattcttgta 27483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 468 - 534
Target Start/End: Original strand, 34192 - 34258
Alignment:
Q  468 ttaaattctagaacagtaaaagcaaatatcccttttccatgaattttacttttcttctccattgagt 534  Q
    |||||||  |||||||||||||||||||||| |||||  ||||||||||||||||| |||| |||||    
T  34192 ttaaattaaagaacagtaaaagcaaatatcctttttctgtgaattttacttttcttgtccaatgagt 34258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 246 - 292
Target Start/End: Complemental strand, 284753 - 284707
Alignment:
Q  246 tcagtaatgcaattttgaattggttagtaatttgaggaattcttgta 292  Q
    |||||||||||||||| ||||||||| |||||||| |||||||||||    
T  284753 tcagtaatgcaattttcaattggttactaatttgatgaattcttgta 284707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 246 - 292
Target Start/End: Complemental strand, 291162 - 291116
Alignment:
Q  246 tcagtaatgcaattttgaattggttagtaatttgaggaattcttgta 292  Q
    |||||||||||||||| ||||||||| |||||||| ||||| |||||    
T  291162 tcagtaatgcaattttcaattggttactaatttgatgaatttttgta 291116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 284
Target Start/End: Complemental strand, 33799 - 33752
Alignment:
Q  237 ttaaattcctcagtaatgcaattttgaattggttagtaatttgaggaa 284  Q
    |||||||||||| |||||||||||||||||||||| ||| ||| ||||    
T  33799 ttaaattcctcattaatgcaattttgaattggttattaaattggggaa 33752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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