View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1606_low_8 (Length: 428)
Name: NF1606_low_8
Description: NF1606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1606_low_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 14 - 245
Target Start/End: Complemental strand, 33120919 - 33120688
Alignment:
| Q |
14 |
agaggcctaaatgttgtgttttagtgatgaccaagccttcaaaaggtgaactatctcaagatgtacaagaaaacaatagagaaaaagatgaatgtgcgtt |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33120919 |
agaggcctaaatgttgtgttttagtgatgaccaggcctttaaaaggtgaactatctcaagatgtacaagaaaacaatagagaaaaagatgaatgtgcgtt |
33120820 |
T |
|
| Q |
114 |
tgagatgataatattgacggaatgaattatactaaccatcacttctttagaatttaaaagagtactcggcggttggctatcattctgccaatattgtcat |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
33120819 |
tgagatgataatattgacggaatgaattatactaaccatcacttctttagaatttaaaagagtactcggcggttggctatcattctgtcaatattgtcat |
33120720 |
T |
|
| Q |
214 |
cttaaatacacaattgatctttttctctctca |
245 |
Q |
| |
|
|| ||| ||||||||||||||||| ||||||| |
|
|
| T |
33120719 |
ctcaaacacacaattgatctttttttctctca |
33120688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 262 - 412
Target Start/End: Complemental strand, 33119395 - 33119245
Alignment:
| Q |
262 |
acatgacagtgttgattccaacaaattgttggaaaattgcaagtcccattcctgcatataaacctctccttacagctttggttttcatcatttgtactat |
361 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
33119395 |
acatgacagtgttgattccaacaaattgttggaaaattgcaagtcccattcctgcatataaacctctccttatagctttggttttcatcatttgtactat |
33119296 |
T |
|
| Q |
362 |
tgttatgttgtttgaaaattctgcttccttaatttccttttcagttgattc |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33119295 |
tgttatgttgtttgaaaattctgcttccttaatttccttttcagttgattc |
33119245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 328
Target Start/End: Complemental strand, 33116235 - 33116180
Alignment:
| Q |
273 |
ttgattccaacaaattgttggaaaattgcaagtcccattcctgcatataaacctct |
328 |
Q |
| |
|
|||||||| |||||||||||||| ||| ||| |||||||||||||| |||||||| |
|
|
| T |
33116235 |
ttgattcctacaaattgttggaatatttgaaggcccattcctgcatacaaacctct |
33116180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 45933881 - 45933823
Alignment:
| Q |
25 |
tgttgtgttttagtgatgaccaagccttcaaaaggtgaactatctcaagatgtacaaga |
83 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
45933881 |
tgttgtgttttagtgatgaccaagccttcaaagggtgaactatctcaagaggtacaaga |
45933823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 270 - 348
Target Start/End: Original strand, 21559297 - 21559375
Alignment:
| Q |
270 |
gtgttgattccaacaaattgttggaaaattgcaagtcccattcctgcatataaacctctccttacagctttggttttca |
348 |
Q |
| |
|
||||||||||| |||||||||||||| ||| ||||||| |||||||||||||||||| || || | ||||||||||| |
|
|
| T |
21559297 |
gtgttgattccgacaaattgttggaagatttgtagtcccactcctgcatataaacctcttctaactgttttggttttca |
21559375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 328
Target Start/End: Original strand, 1084177 - 1084232
Alignment:
| Q |
273 |
ttgattccaacaaattgttggaaaattgcaagtcccattcctgcatataaacctct |
328 |
Q |
| |
|
|||||||| |||||||||||||| ||| ||| |||||||||||||| |||||||| |
|
|
| T |
1084177 |
ttgattcctacaaattgttggaatatttgaaggcccattcctgcatacaaacctct |
1084232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University