View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1606_low_9 (Length: 410)
Name: NF1606_low_9
Description: NF1606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1606_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 17 - 402
Target Start/End: Original strand, 52622649 - 52623031
Alignment:
| Q |
17 |
caatttaatccttgttactaattattaattagtggactcacttagggaattgttttgatcaatctctttgaatttcaaccatccaaacacttattcctta |
116 |
Q |
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| T |
52622649 |
caatttaatccttgttactaattattaattagtggactcacttagggaattgttttgatcaatctctttgaatttcaaccatccaaacacttattcctta |
52622748 |
T |
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| Q |
117 |
tctgtacgtactgactaaatagcatatatagcttcattcaatcaaataatataacaagtataagaaatggtgagtccaatcnnnnnnngaaatggtgagt |
216 |
Q |
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| T |
52622749 |
tctgtacgtactgactaaatagcatatatagcttcattcaatcaaataatataacaagtataagaaatagtgagtccaatcaaaaaaagaaatgttgagt |
52622848 |
T |
|
| Q |
217 |
gatatattgaatcaataagagaggcacctaaaaaataaattaattaaactacacgtgtctgaccaacgtcccaatttcatatacctaatgtgaggaattg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
52622849 |
gatatattgaatcaataagagaggcacctaaaaaattaattaattaaactacacgtgtctaaccaacgtcccaatttcatatacctaatgtgaggaattg |
52622948 |
T |
|
| Q |
317 |
gggatacacgtgttttcannnnnnnnnctttccctgattatttgctagctttctgtaacaaagcaatctaatatctaagaattatc |
402 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
52622949 |
gggatacacgtgttttcattttttt---tttccctgattatttgctagctttctgtaacaaagcaatctaatatctaagcattatc |
52623031 |
T |
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