View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1607-INSERTION-1 (Length: 775)

Name: NF1607-INSERTION-1
Description: NF1607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1607-INSERTION-1
NF1607-INSERTION-1
[»] chr5 (18 HSPs)
chr5 (8-775)||(31464391-31465158)
chr5 (8-775)||(31483573-31484340)
chr5 (232-694)||(31387455-31387914)
chr5 (232-480)||(31460019-31460267)
chr5 (420-651)||(31390675-31390900)
chr5 (592-693)||(31460376-31460478)
chr5 (286-394)||(31384129-31384237)
chr5 (568-664)||(31407401-31407497)
chr5 (592-664)||(31416558-31416630)
chr5 (592-662)||(31494135-31494205)
chr5 (595-664)||(31475956-31476025)
chr5 (595-664)||(40843338-40843407)
chr5 (605-681)||(31384407-31384483)
chr5 (322-429)||(31317597-31317704)
chr5 (606-665)||(31395765-31395824)
chr5 (595-678)||(31643895-31643978)
chr5 (595-653)||(31463034-31463092)
chr5 (420-461)||(31462866-31462907)


Alignment Details
Target: chr5 (Bit Score: 756; Significance: 0; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 756; E-Value: 0
Query Start/End: Original strand, 8 - 775
Target Start/End: Original strand, 31464391 - 31465158
Alignment:
8 attcagacccttccaataatccaatcaatgagttttctaaccatcgtcttcctgttctcgttacttggattggtttggtagaaatgtctaattggatctt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
31464391 attcagacccttccaataatccaatcaatgagttttctaaccatcgtcttcctgttctcgttacttggattggtttggtagaaatgtctaattggatctt 31464490  T
108 ccacaacacttggtgctgccgtattatttgggatgaaatgcagaattggatcactttctgcgccgttttgattgcctatagaaggttgatcttggattgg 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
31464491 ccacaacacttggtgctgccgtattatttgggatgaaatgcagaattggatcactttctgcgccgttttgattgcctatagaaggttgatcttggattgg 31464590  T
208 gagtccactttcacccaagtaaacacgaaacatgatgagagaataagcaaaacacgctccaacaacagctaaaacttttttaattttcatcagttgtaaa 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
31464591 gagtccactttcacccaagtaaacacgaaacatgatgagagaataagcaaaacacgctccaacaacagctaaaacttttttaattttcatcagttgtaaa 31464690  T
308 gtgaaatatccacagaaaaaataaaggagatcaacctcaaatcccaagtgagtttgctttgacatacaaagcgacatgacagcaaaagcagcagacgata 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
31464691 gtgaaatatccacagaaaaaataaaggagatcaacctcaaatcccaagtgagtttgctttgacatacatagcgacatgacagcaaaagcagcagacgata 31464790  T
408 taaggctatatgcatctggttttgcgttagctttatcaaagaaaaatgagtaaatagtagtgattgtgaaaactgaaactgccaaatgagctctgaacct 507  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
31464791 taaggctatatgcatctggttttgcattagctttatcaaagaaaaatgagtaaatagtagtgattgtgaaaactgaaactgccaaatgagctctgaacct 31464890  T
508 gagacttggcgatttttgccatgtgattgcatttgctaacaagtccgcaaggcagataacgaaactgaacagacagtacagagataccttcaataaattc 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
31464891 gagacttggcgatttttgccatgtgattgcatttgctaacaagtccgcaaggcagataacgaaactgaacagacagtacagagataccttcaataaattc 31464990  T
608 cactttccaaatagatgattgaaggaagggcttagagcgtaacatagcagtccaacaatggatgaaacaaaacacagatatctccatttctttacctgca 707  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
31464991 cactttccaaatagatgattgaaggaagggcttagagcgtaacatagcagtccaacaatggatgaaacaaaacacagatatctccatttctttacctgca 31465090  T
708 tcttcctattcaacattttgttgaccttcgacgtcatgttgtttctcaagcgagtaatatttgctttc 775  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
31465091 tcttcctattcaacattttgttgaccttcgacgtcatgttgtttctcaagcgagtaatgtttgctttc 31465158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 8 - 775
Target Start/End: Complemental strand, 31484340 - 31483573
Alignment:
8 attcagacccttccaataatccaatcaatgagttttctaaccatcgtcttcct---gttctcgttacttggattggtttggtagaaatgtctaattggat 104  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||| |   |||||||||||| |||||||||||||||||||||||||||||||    
31484340 attcagacccttccaataatccaatcaatgatttttctaaccatcgtcttcttcttgttctcgttactaggattggtttggtagaaatgtctaattggat 31484241  T
105 cttccacaacacttggtgctgccgtattatttgggatgaaatgcagaattggatcactttctgcgccgttttgattgcctatagaaggttgatcttggat 204  Q
    ||||  ||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
31484240 cttcttcaacacttgatgccgcggtattatttgggatgaaatgcagaattggatcactttctgcgccgttttgattgcctatggaaggttgatcttggat 31484141  T
205 tgggagtccactttcacccaagtaaacacgaaacatgatgagagaataagcaaaacacgctccaacaacagctaaaacttttttaattttcatcagttgt 304  Q
    ||||||||| |||||||||  ||||| |||||||||||||||| |||||   |||| ||| ||||||||| ||||||    |||||||||||| ||| ||    
31484140 tgggagtccgctttcacccgggtaaaaacgaaacatgatgagaaaataactgaaactcgcaccaacaacaactaaaaacaatttaattttcattagtagt 31484041  T
305 aaagtgaaatatccacagaaaaaataaaggagatcaacctcaaatcccaagtgagtttgctttgacatacaaagcgacatgacagcaaaagcagcagacg 404  Q
    |||||||||||| |||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  ||    
31484040 aaagtgaaatatgcacaaaaaaaatataggagatcaacctcaaatcccaggtgagtttgctttgacatacaaagcgacatgacagcaaaagcagcaagcg 31483941  T
405 atataaggctatatgcatctggttttgcgttagc---tttatcaaagaaaaatgagtaaatagtagtgattgtgaaaactgaaactgccaaatgagctct 501  Q
    |||| |||||||||||||| |||||||||||| |   ||||||||||| | | ||||||||||| ||||||||||||||| ||| |||||||||||||||    
31483940 atatcaggctatatgcatccggttttgcgttatcttttttatcaaagatataggagtaaatagttgtgattgtgaaaactaaaaatgccaaatgagctct 31483841  T
502 gaacctgagacttggcgatttttgccatgtgattgcatttgctaacaagtccgcaaggcagataacgaaactgaacagacagtacagagataccttcaat 601  Q
    |||||| |||||||||||  |||||||| ||      ||||| | ||| ||||| | |||||||| ||||||||| | |  ||| |||  || ||||||     
31483840 gaacctaagacttggcgacgtttgccatatg------tttgcaatcaaatccgcgatgcagataatgaaactgaaaacagtgtaaagaattatcttcaac 31483747  T
602 aaattccactttccaaatagatgattgaaggaagggcttagagcgtaacatagcagtccaacaatggatgaaacaaaacacagatatctccatttcttta 701  Q
    ||| ||||||||||| ||| |||||||||||||| ||||||||||||| | || ||||||| |||||||||||||||||||| | |||||||| || |||    
31483746 aaactccactttccacatatatgattgaaggaagagcttagagcgtaaaagagtagtccaataatggatgaaacaaaacacacaaatctccatatcatta 31483647  T
702 cctgcatcttcctattcaacattttgttgaccttcgacgtcatgttgtttctcaagcgagtaatatttgctttc 775  Q
     ||||||||||||| ||||||||| ||||| ||| || |||| ||||||||||||||||| ||| |||||||||    
31483646 gctgcatcttcctactcaacatttggttgagcttggaagtcacgttgtttctcaagcgagcaatgtttgctttc 31483573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 232 - 694
Target Start/End: Original strand, 31387455 - 31387914
Alignment:
232 acgaaacatgatgagagaataagcaaaacacgctccaacaacagctaaaacttttttaattttcatcagttgtaaagtgaaatatccacagaaaaaataa 331  Q
    |||||| |||||||| ||||||   |||| |||||||||||   ||||||||  ||| || ||||||||||||||||| |||||||| || ||||||||     
31387455 acgaaaaatgatgagggaataactgaaactcgctccaacaattactaaaactaattttatcttcatcagttgtaaagttaaatatccgcaaaaaaaatat 31387554  T
332 aggagatcaacctcaaatcccaagtgagtttgctttgacatacaaagcgacatgacagcaaaagcagcagacgatataaggctatatgcatctggttttg 431  Q
    ||||||||||| || ||||| ||||||||||||||||||| ||  || |||||||  |||||||||||| | || || || || ||   ||||||||||     
31387555 aggagatcaacttcgaatccgaagtgagtttgctttgacaaactgagagacatgatggcaaaagcagcacaggaaatcagactgtacaaatctggttttc 31387654  T
432 cgttagctttatcaaagaaaaatgagtaaatagtagtgattgtgaaaactgaaactgccaaatgagctctgaacctgagacttg---gcgatttttgcca 528  Q
    |||||||||||||||| || || ||||||| ||| |||||| ||||||| ||||   ||||||||||| | |     ||||| |    ||| ||||||||    
31387655 cgttagctttatcaaaaaagaaggagtaaacagtggtgattatgaaaaccgaaaacaccaaatgagctttaagtggaagactagtgttcgagttttgcca 31387754  T
529 tgtgattgcatttgctaacaagtccgcaaggcagataacgaaactgaacagacagtacagagataccttcaataaattccactttccaaatagatgattg 628  Q
    | ||      ||||| ||||||   |  |||||||||||||||||||| |  |  || ||| ||||||| || || ||||| || |||||||||||| ||    
31387755 tttg------tttgcaaacaagatggtgaggcagataacgaaactgaaaatgctataaagaaataccttaaaaaagttccagttcccaaatagatgagtg 31387848  T
629 aaggaagggcttagagcgtaacatagcagtccaacaatggatgaaacaaaacacagatatctccat 694  Q
    ||||||| ||| ||||| ||||| |||||||||||||  |||||||||||| ||| | ||||||||    
31387849 aaggaagagctaagagcataacaaagcagtccaacaacagatgaaacaaaagacacaaatctccat 31387914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 232 - 480
Target Start/End: Original strand, 31460019 - 31460267
Alignment:
232 acgaaacatgatgagagaataagcaaaacacgctccaacaacagctaaaacttttttaattttcatcagttgtaaagtgaaatatccacagaaaaaataa 331  Q
    |||||| |||||||| ||||||   |||| |||||||||||   |||||||   ||| || ||||||||||||||||| |||||||| || ||||| ||     
31460019 acgaaaaatgatgagggaataactgaaactcgctccaacaattactaaaaccaattttatcttcatcagttgtaaagttaaatatccgcaaaaaaagtat 31460118  T
332 aggagatcaacctcaaatcccaagtgagtttgctttgacatacaaagcgacatgacagcaaaagcagcagacgatataaggctatatgcatctggttttg 431  Q
    ||||||||||| || ||||| ||||||||||||||||||| ||  || |||||||| ||||||||||||   || || || || ||   ||||||||||     
31460119 aggagatcaacttcgaatccgaagtgagtttgctttgacaaactgagagacatgacggcaaaagcagcaccggaaattagactgtacaaatctggttttc 31460218  T
432 cgttagctttatcaaagaaaaatgagtaaatagtagtgattgtgaaaac 480  Q
    |||||||||||||||| || || ||||||| ||| |||||| |||||||    
31460219 cgttagctttatcaaaaaagaaggagtaaacagtggtgattatgaaaac 31460267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 420 - 651
Target Start/End: Original strand, 31390675 - 31390900
Alignment:
420 catctggttttgcgttagctttatcaaagaaaaatgagtaaatagtagtgattgtgaaaactgaaactgccaaatgagctctgaacctgagacttggcga 519  Q
    ||||||||||| |||||||||||||||||||||| |||||||  || || ||||||||||  || | | ||||||||||||| | |||||||||||| ||    
31390675 catctggttttccgttagctttatcaaagaaaaaggagtaaactgttgttattgtgaaaatagagaataccaaatgagctctaagcctgagacttggtga 31390774  T
520 tttttgccatgtgattgcatttgctaacaagtccgcaaggcagataacgaaactgaacagacagtacagagataccttcaataaattccactttccaaat 619  Q
     ||||||||| ||      ||||| || |||   |||||||| |||| ||||||||| | |  ||||||| | | ||| || || ||||| |||||||||    
31390775 gttttgccatttg------tttgcaaaaaagatggcaaggcaaataatgaaactgaaaacagtgtacagaaaaatctttaacaagttccagtttccaaat 31390868  T
620 agatgattgaaggaagggcttagagcgtaaca 651  Q
    ||||| ||||||||||  |||||||| |||||    
31390869 agatggttgaaggaagaacttagagcataaca 31390900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 592 - 693
Target Start/End: Original strand, 31460376 - 31460478
Alignment:
592 taccttcaataaattccactttccaaatagatgattgaaggaagggcttagagcgtaacatagcagt-ccaacaatggatgaaacaaaacacagatatct 690  Q
    |||||| || || ||||| || |||||||||||||||||||||| ||| ||||| ||||| |||||| ||||||| ||||||||||||||||| | ||||    
31460376 taccttaaaaaagttccagttcccaaatagatgattgaaggaagagctaagagcataacaaagcagtgccaacaacggatgaaacaaaacacacacatct 31460475  T
691 cca 693  Q
    |||    
31460476 cca 31460478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 286 - 394
Target Start/End: Original strand, 31384129 - 31384237
Alignment:
286 tttaattttcatcagttgtaaagtgaaatatccacagaaaaaataaaggagatcaacctcaaatcccaagtgagtttgctttgacatacaaagcgacatg 385  Q
    |||||| ||||| || |||||||| ||| |||| ||||||||||| | |||||||||||||||| | ||||||||||| ||||||| || |||  |||||    
31384129 tttaatcttcatgagctgtaaagttaaacatccgcagaaaaaatataagagatcaacctcaaattcgaagtgagtttgttttgacaaaccaagatacatg 31384228  T
386 acagcaaaa 394  Q
    | |||||||    
31384229 atagcaaaa 31384237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 568 - 664
Target Start/End: Original strand, 31407401 - 31407497
Alignment:
568 gaaactgaacagacagtacagagataccttcaataaattccactttccaaatagatgattgaaggaagggcttagagcgtaacatagcagtccaaca 664  Q
    ||||||||| |||  ||| ||| ||| |||||| |||||||| |||||||||||||| |||||||||| ||| ||||| ||||| |||| |||||||    
31407401 gaaactgaaaagagtgtaaagaaatatcttcaacaaattccaatttccaaatagatggttgaaggaagtgctgagagcataacagagcaatccaaca 31407497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 592 - 664
Target Start/End: Original strand, 31416558 - 31416630
Alignment:
592 taccttcaataaattccactttccaaatagatgattgaaggaagggcttagagcgtaacatagcagtccaaca 664  Q
    ||||||||| |||||||| |||||||||||||| ||||| |||| ||||||||| ||||| | ||||||||||    
31416558 taccttcaacaaattccaatttccaaatagatggttgaaagaagagcttagagcataacaaatcagtccaaca 31416630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 592 - 662
Target Start/End: Original strand, 31494135 - 31494205
Alignment:
592 taccttcaataaattccactttccaaatagatgattgaaggaagggcttagagcgtaacatagcagtccaa 662  Q
    ||||||||| |||||||| |||||||||||||| ||||| |||| ||||||||| ||||| |||| |||||    
31494135 taccttcaacaaattccaatttccaaatagatggttgaacgaagagcttagagcataacaaagcaatccaa 31494205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 595 - 664
Target Start/End: Original strand, 31475956 - 31476025
Alignment:
595 cttcaataaattccactttccaaatagatgattgaaggaagggcttagagcgtaacatagcagtccaaca 664  Q
    |||||| |||||||| |||||||||||||  || ||||||| ||||||||| ||||| ||||||||||||    
31475956 cttcaacaaattccagtttccaaatagatagttaaaggaagagcttagagcataacaaagcagtccaaca 31476025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 595 - 664
Target Start/End: Original strand, 40843338 - 40843407
Alignment:
595 cttcaataaattccactttccaaatagatgattgaaggaagggcttagagcgtaacatagcagtccaaca 664  Q
    |||||| |||||||| |||||||||||||  |||||||||| ||||||||| ||||| | ||||||||||    
40843338 cttcaacaaattccaatttccaaatagatagttgaaggaagagcttagagcataacaaaccagtccaaca 40843407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 605 - 681
Target Start/End: Original strand, 31384407 - 31384483
Alignment:
605 ttccactttccaaatagatgattgaaggaagggcttagagcgtaacatagcagtccaacaatggatgaaacaaaaca 681  Q
    ||||| || |||||||||||||||||||||| ||| ||||| ||| | | ||| |||||||| ||||||||||||||    
31384407 ttccatttcccaaatagatgattgaaggaagagctaagagcataataaaacagaccaacaattgatgaaacaaaaca 31384483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 322 - 429
Target Start/End: Complemental strand, 31317704 - 31317597
Alignment:
322 gaaaaaataaaggagatcaacctcaaatcccaagtgagtttgctttgacatacaaagcgacatgacagcaaaagcagcagacgatataaggctatatgca 421  Q
    |||||||||||| |||||||  ||||||||| | ||||||||| |||||| || ||| ||||| | |||||| |||||| | || || |  |||||||||    
31317704 gaaaaaataaagaagatcaatttcaaatccccactgagtttgccttgacaaactaagtgacataatagcaaaggcagcacatgaaattaaactatatgca 31317605  T
422 tctggttt 429  Q
    ||||||||    
31317604 tctggttt 31317597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 606 - 665
Target Start/End: Complemental strand, 31395824 - 31395765
Alignment:
606 tccactttccaaatagatgattgaaggaagggcttagagcgtaacatagcagtccaacaa 665  Q
    |||| ||||||||||||||||||||||||| ||| ||||| ||||| |  ||||||||||    
31395824 tccagtttccaaatagatgattgaaggaagagctgagagcataacaaacaagtccaacaa 31395765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 595 - 678
Target Start/End: Original strand, 31643895 - 31643978
Alignment:
595 cttcaataaattccactttccaaatagatgattgaaggaagggcttagagcgtaacatagcagtccaacaatggatgaaacaaa 678  Q
    |||||| | |||||| | |||||||||||  |||||||||| ||| ||||| ||||| || ||||||||||| |||||| ||||    
31643895 cttcaacagattccaatctccaaatagatagttgaaggaagagctaagagcataacaaagtagtccaacaatagatgaagcaaa 31643978  T

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Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 595 - 653
Target Start/End: Original strand, 31463034 - 31463092
Alignment:
595 cttcaataaattccactttccaaatagatgattgaaggaagggcttagagcgtaacata 653  Q
    |||||| || ||||| |||||||||||||| |||||||||| ||||| ||| |||||||    
31463034 cttcaacaagttccaatttccaaatagatggttgaaggaagagcttacagcataacata 31463092  T

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Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 420 - 461
Target Start/End: Original strand, 31462866 - 31462907
Alignment:
420 catctggttttgcgttagctttatcaaagaaaaatgagtaaa 461  Q
    ||||||||||| ||||| |||||||||||||||| |||||||    
31462866 catctggttttccgttatctttatcaaagaaaaacgagtaaa 31462907  T

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