View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1607-INSERTION-11 (Length: 629)

Name: NF1607-INSERTION-11
Description: NF1607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1607-INSERTION-11
NF1607-INSERTION-11
[»] chr7 (9 HSPs)
chr7 (7-341)||(43940186-43940531)
chr7 (507-588)||(43940532-43940613)
chr7 (428-498)||(25614710-25614780)
chr7 (431-498)||(43255456-43255523)
chr7 (428-498)||(37149364-37149434)
chr7 (427-495)||(33050294-33050362)
chr7 (427-494)||(48057390-48057457)
chr7 (9-78)||(43928276-43928345)
chr7 (427-503)||(37385117-37385193)
[»] chr3 (6 HSPs)
chr3 (427-501)||(30633700-30633774)
chr3 (427-495)||(11327219-11327287)
chr3 (427-498)||(50652499-50652570)
chr3 (428-500)||(44855363-44855435)
chr3 (431-495)||(50279979-50280043)
chr3 (427-495)||(52453984-52454052)
[»] chr2 (8 HSPs)
chr2 (428-484)||(3299008-3299064)
chr2 (431-502)||(17826162-17826233)
chr2 (430-498)||(42141499-42141567)
chr2 (427-498)||(5962749-5962820)
chr2 (450-498)||(1763714-1763762)
chr2 (427-495)||(22353067-22353135)
chr2 (427-495)||(37966467-37966535)
chr2 (427-495)||(38246643-38246711)
[»] chr8 (8 HSPs)
chr8 (427-498)||(5924921-5924992)
chr8 (427-498)||(5925166-5925237)
chr8 (427-498)||(10344439-10344510)
chr8 (427-495)||(33817268-33817336)
chr8 (427-493)||(37562035-37562101)
chr8 (427-495)||(14228804-14228872)
chr8 (427-495)||(30927823-30927891)
chr8 (431-495)||(39258947-39259011)
[»] chr4 (6 HSPs)
chr4 (427-498)||(2193698-2193769)
chr4 (427-498)||(32901440-32901511)
chr4 (427-487)||(25936351-25936411)
chr4 (427-495)||(31221524-31221592)
chr4 (427-493)||(41495124-41495190)
chr4 (427-495)||(24019863-24019931)
[»] chr1 (11 HSPs)
chr1 (427-498)||(9011756-9011827)
chr1 (427-498)||(42843233-42843304)
chr1 (428-498)||(50777312-50777382)
chr1 (429-498)||(51193022-51193091)
chr1 (427-495)||(26501406-26501474)
chr1 (427-498)||(3291314-3291385)
chr1 (427-498)||(38627333-38627404)
chr1 (431-493)||(3100557-3100619)
chr1 (427-493)||(7078394-7078460)
chr1 (427-493)||(25130814-25130880)
chr1 (427-495)||(6829677-6829745)
[»] scaffold0522 (1 HSPs)
scaffold0522 (427-495)||(2396-2464)
[»] scaffold0193 (1 HSPs)
scaffold0193 (428-492)||(24785-24849)
[»] chr5 (4 HSPs)
chr5 (427-495)||(16143608-16143676)
chr5 (427-498)||(17489459-17489530)
chr5 (427-495)||(12512904-12512972)
chr5 (427-495)||(38010983-38011051)
[»] chr6 (2 HSPs)
chr6 (427-493)||(33491849-33491915)
chr6 (427-495)||(3339391-3339459)
[»] scaffold0085 (1 HSPs)
scaffold0085 (427-495)||(31192-31260)


Alignment Details
Target: chr7 (Bit Score: 281; Significance: 1e-157; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 7 - 341
Target Start/End: Original strand, 43940186 - 43940531
Alignment:
Q  7 aattttgccatagagaagcaaaacagttttctctttcgagaatgatgaaaggtatggattgttttgttaagcaagctgctgtggctaggccggatgttcc 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43940186 aattttgccatagagaagcaaaacagttttctctttcgagaatgatgaaaggtatggattgttttgttaagcaagctgctgtggctaggccggatgttcc 43940285  T
Q  107 agctccgattattatcaccggtgcttcatgcattctgttatttctttattttatgtttt----------ttctactgaggaaaaatcgaatgatgaataa 196  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||    
T  43940286 agctccgattattatcaccggtgcttcatgcattctgttatttctttattttatgtttttttagctatgttctactgaggaaaaatcgaatgatgaataa 43940385  T
Q  197 aataagagac--agacgtgtgtacaaagttagatgcagtacggaacttgattttaccaaatttgtttttgattcccaactgataatatctattttttgtg 294  Q
    ||||||||||  ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  43940386 aataagagacaaagacgtgtgcacaacgttagatgcagtacggaacttgattttaccaaatttgttttttattcccaactgataatatctattttttgtg 43940485  T
Q  295 gttgagaaaggatgccagttttaagtgatctttgtagacttttacaa 341  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||    
T  43940486 gttgagaaaggatgccag-tttaagtgatctttgtagacttttacaa 43940531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 507 - 588
Target Start/End: Original strand, 43940532 - 43940613
Alignment:
Q  507 ttagtgtcacaaacaagtaaaatatgaaaaaacgacctattatcaactatagctatcttccacattgctcgtgtaacatttc 588  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||    
T  43940532 ttagtgtcacaaacaagtaaaatatgaaaaaacgacatattatcaactatagctatcttccacattgttcgtgtcacatttc 43940613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 428 - 498
Target Start/End: Complemental strand, 25614780 - 25614710
Alignment:
Q  428 accaataagaagagagaggaacaagattgtcataaaaattatcatcaaatagatgtacatatatcattact 498  Q
    |||||||||||||||||  |||||| ||||||  |||||| ||||||| |||||||||| |||||||||||    
T  25614780 accaataagaagagagaaaaacaaggttgtcaccaaaattgtcatcaattagatgtacaaatatcattact 25614710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 431 - 498
Target Start/End: Complemental strand, 43255523 - 43255456
Alignment:
Q  431 aataagaagagagaggaacaagattgtcataaaaattatcatcaaatagatgtacatatatcattact 498  Q
    ||||||||||||||  |  ||||||||||  |||||||||||||| |||||||||| |||||||||||    
T  43255523 aataagaagagagaaaagtaagattgtcaccaaaattatcatcaattagatgtacaaatatcattact 43255456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 428 - 498
Target Start/End: Complemental strand, 37149434 - 37149364
Alignment:
Q  428 accaataagaagagagaggaacaagattgtcataaaaattatcatcaaatagatgtacatatatcattact 498  Q
    ||||||||||||| |||  |||||| ||||||||||| || || | |||||||||||||||||||| ||||    
T  37149434 accaataagaagaaagaaaaacaaggttgtcataaaagttgtcttgaaatagatgtacatatatcactact 37149364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 427 - 495
Target Start/End: Original strand, 33050294 - 33050362
Alignment:
Q  427 gaccaataagaagagagaggaacaagattgtcataaaaattatcatcaaatagatgtacatatatcatt 495  Q
    ||||||||||||||||||| |||||| ||||||  ||| || |||| |||| |||||||| ||||||||    
T  33050294 gaccaataagaagagagagaaacaaggttgtcactaaagttgtcatgaaatggatgtacaaatatcatt 33050362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 427 - 494
Target Start/End: Complemental strand, 48057457 - 48057390
Alignment:
Q  427 gaccaataagaagagagaggaacaagattgtcataaaaattatcatcaaatagatgtacatatatcat 494  Q
    ||||||||||||||||||  ||||| |||||||  |||  | |||||||||||||||||| |||||||    
T  48057457 gaccaataagaagagagaaaaacaaaattgtcactaaagatgtcatcaaatagatgtacaaatatcat 48057390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 78
Target Start/End: Original strand, 43928276 - 43928345
Alignment:
Q  9 ttttgccatagagaagcaaaacagttttctctttcgagaatgatgaaaggtatggattgttttgttaagc 78  Q
    |||| |||||| ||||||||||| |||||||||||||| || ||  |||| |||||||| ||| ||||||    
T  43928276 tttttccatagtgaagcaaaacaattttctctttcgaggattatataaggaatggattggtttcttaagc 43928345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 427 - 503
Target Start/End: Complemental strand, 37385193 - 37385117
Alignment:
Q  427 gaccaataagaagagagaggaacaagattgtcataaaaattatcatcaaatagatgtacatatatcattacttttta 503  Q
    |||||||||||| ||||| ||||||| ||||||  ||| || ||||||| | |||||||| |||||| |||| ||||    
T  37385193 gaccaataagaaaagagaagaacaaggttgtcaccaaagttgtcatcaattggatgtacaaatatcactactcttta 37385117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 427 - 501
Target Start/End: Complemental strand, 30633774 - 30633700
Alignment:
Q  427 gaccaataagaagagagaggaacaagattgtcataaaaattatcatcaaatagatgtacatatatcattactttt 501  Q
    ||||||||||||||||||  || ||| ||||||| ||| ||||||| ||||||||||||| |||||||| |||||    
T  30633774 gaccaataagaagagagaaaaataaggttgtcattaaagttatcataaaatagatgtacaaatatcattgctttt 30633700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 427 - 495
Target Start/End: Original strand, 11327219 - 11327287
Alignment:
Q  427 gaccaataagaagagagaggaacaagattgtcataaaaattatcatcaaatagatgtacatatatcatt 495  Q
    ||||||||||||||||||| |||||| ||||||  ||| || |||| |||| |||||||| ||||||||    
T  11327219 gaccaataagaagagagagaaacaaggttgtcactaaagttgtcatgaaatggatgtacaaatatcatt 11327287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 427 - 498
Target Start/End: Original strand, 50652499 - 50652570
Alignment:
Q  427 gaccaataagaagagagaggaacaagattgtcataaaaattatcatcaaatagatgtacatatatcattact 498  Q
    ||||||||||||||||||  | ||| |||||||| |||||| ||||||| || ||||||| |||||| ||||    
T  50652499 gaccaataagaagagagaaaagcaaaattgtcatcaaaattgtcatcaattaaatgtacaaatatcactact 50652570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 428 - 500
Target Start/End: Original strand, 44855363 - 44855435
Alignment:
Q  428 accaataagaagagagaggaacaagattgtcataaaaattatcatcaaatagatgtacatatatcattacttt 500  Q
    |||||||||||||||||  || ||||||||||  ||| || |||| |||| |||||||| |||||||| ||||    
T  44855363 accaataagaagagagaaaaataagattgtcactaaagttgtcatgaaattgatgtacaaatatcattgcttt 44855435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 431 - 495
Target Start/End: Complemental strand, 50280043 - 50279979
Alignment:
Q  431 aataagaagagagaggaacaagattgtcataaaaattatcatcaaatagatgtacatatatcatt 495  Q
    ||||||||||||||  |||||| ||||||| ||| || |||| |||| |||||||| ||||||||    
T  50280043 aataagaagagagaaaaacaaggttgtcattaaagttgtcatgaaatggatgtacaaatatcatt 50279979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 427 - 495
Target Start/End: Complemental strand, 52454052 - 52453984
Alignment:
Q  427 gaccaataagaagagagaggaacaagattgtcataaaaattatcatcaaatagatgtacatatatcatt 495  Q
    ||||||||||||||||||| |||||  ||||||  ||| || |||| |||| |||||||| ||||||||    
T  52454052 gaccaataagaagagagagaaacaaagttgtcactaaagttgtcatgaaatggatgtacaaatatcatt 52453984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 428 - 484
Target Start/End: Complemental strand, 3299064 - 3299008
Alignment:
Q  428 accaataagaagagagaggaacaagattgtcataaaaattatcatcaaatagatgta 484  Q
    |||||||||||||||||| || ||||||||||  ||||||||||| |||||||||||    
T  3299064 accaataagaagagagagaaataagattgtcaccaaaattatcattaaatagatgta 3299008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 431 - 502
Target Start/End: Original strand, 17826162 - 17826233
Alignment:
Q  431 aataagaagagagaggaacaagattgtcataaaaattatcatcaaatagatgtacatatatcattacttttt 502  Q
    ||||||||||||||  |||||| ||||||| ||| || || | |||||||||||||||||||| ||||||||    
T  17826162 aataagaagagagaaaaacaaggttgtcatgaaagttgtcttaaaatagatgtacatatatcactacttttt 17826233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 430 - 498
Target Start/End: Complemental strand, 42141567 - 42141499
Alignment:
Q  430 caataagaagagagaggaacaagattgtcataaaaattatcatcaaatagatgtacatatatcattact 498  Q
    ||||||||| |||||  |||||| ||||||  ||| |||||||||||||||||| || |||||||||||    
T  42141567 caataagaatagagaaaaacaaggttgtcaacaaagttatcatcaaatagatgtccaaatatcattact 42141499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 427 - 498
Target Start/End: Original strand, 5962749 - 5962820
Alignment:
Q  427 gaccaataagaagagagaggaacaagattgtcataaaaattatcatcaaatagatgtacatatatcattact 498  Q
    ||||||||||||||||||  |||||  || |||  |||||||||||||| |||||||||| |||||| ||||    
T  5962749 gaccaataagaagagagaaaaacaaagttatcaccaaaattatcatcaattagatgtacaaatatcactact 5962820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 450 - 498
Target Start/End: Original strand, 1763714 - 1763762
Alignment:
Q  450 aagattgtcataaaaattatcatcaaatagatgtacatatatcattact 498  Q
    |||||||||| ||||||| ||||||||||| | |||| |||||||||||    
T  1763714 aagattgtcacaaaaattgtcatcaaatagttatacaaatatcattact 1763762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 427 - 495
Target Start/End: Complemental strand, 22353135 - 22353067
Alignment:
Q  427 gaccaataagaagagagaggaacaagattgtcataaaaattatcatcaaatagatgtacatatatcatt 495  Q
    ||||||||||||||||||   ||||| || |||  ||||||||||| |||| |||||||| ||||||||    
T  22353135 gaccaataagaagagagaaatacaaggttatcaccaaaattatcattaaatggatgtacaaatatcatt 22353067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 427 - 495
Target Start/End: Original strand, 37966467 - 37966535
Alignment:
Q  427 gaccaataagaagagagaggaacaagattgtcataaaaattatcatcaaatagatgtacatatatcatt 495  Q
    ||||||||||||||||||  |||||| ||||||  ||| || |||| |||| |||||||| ||||||||    
T  37966467 gaccaataagaagagagaaaaacaaggttgtcactaaagttgtcatgaaatggatgtacaaatatcatt 37966535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 427 - 495
Target Start/End: Complemental strand, 38246711 - 38246643
Alignment:
Q  427 gaccaataagaagagagaggaacaagattgtcataaaaattatcatcaaatagatgtacatatatcatt 495  Q
    ||||||||||||||||||| |||||| ||||||  ||| || ||||  ||| |||||||| ||||||||    
T  38246711 gaccaataagaagagagagaaacaaggttgtcactaaagttgtcatggaattgatgtacaaatatcatt 38246643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000006; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 427 - 498
Target Start/End: Original strand, 5924921 - 5924992
Alignment:
Q  427 gaccaataagaagagagaggaacaagattgtcataaaaattatcatcaaatagatgtacatatatcattact 498  Q
    ||||||||||||||||||  || ||| ||||||| ||| || ||||||||| ||||||||||||||| ||||    
T  5924921 gaccaataagaagagagaaaaataaggttgtcatgaaagttgtcatcaaatggatgtacatatatcactact 5924992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 427 - 498
Target Start/End: Original strand, 5925166 - 5925237
Alignment:
Q  427 gaccaataagaagagagaggaacaagattgtcataaaaattatcatcaaatagatgtacatatatcattact 498  Q
    |||||||||||| |||||  || ||| ||||||||||| || ||||||||| ||||||||||||||| ||||    
T  5925166 gaccaataagaatagagaaaaataaggttgtcataaaagttgtcatcaaatggatgtacatatatcactact 5925237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 427 - 498
Target Start/End: Original strand, 10344439 - 10344510
Alignment:
Q  427 gaccaataagaagagagaggaacaagattgtcataaaaattatcatcaaatagatgtacatatatcattact 498  Q
    ||||||||| |||| |||  |||||| ||||||||||| || | ||||||||||||||||||||||| ||||    
T  10344439 gaccaataaaaagaaagaaaaacaaggttgtcataaaagttgttatcaaatagatgtacatatatcactact 10344510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 427 - 495
Target Start/End: Original strand, 33817268 - 33817336
Alignment:
Q  427 gaccaataagaagagagaggaacaagattgtcataaaaattatcatcaaatagatgtacatatatcatt 495  Q
    ||||||||| ||||||||  |||||||||||||  |||||| | || ||||||||||||| ||||||||    
T  33817268 gaccaataaaaagagagaaaaacaagattgtcactaaaattgttatgaaatagatgtacaaatatcatt 33817336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 427 - 493
Target Start/End: Complemental strand, 37562101 - 37562035
Alignment:
Q  427 gaccaataagaagagagaggaacaagattgtcataaaaattatcatcaaatagatgtacatatatca 493  Q
    ||||||||||||||||||  |||||| ||||||| ||| || ||||||| | |||||||| ||||||    
T  37562101 gaccaataagaagagagaaaaacaaggttgtcatcaaagttgtcatcaattggatgtacaaatatca 37562035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 427 - 495
Target Start/End: Original strand, 14228804 - 14228872
Alignment:
Q  427 gaccaataagaagagagaggaacaagattgtcataaaaattatcatcaaatagatgtacatatatcatt 495  Q
    ||||||||| || |||||  || || |||||||  ||||||||||| |||| |||||||||||||||||    
T  14228804 gaccaataaaaaaagagaaaaataaaattgtcactaaaattatcatgaaatggatgtacatatatcatt 14228872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 427 - 495
Target Start/End: Complemental strand, 30927891 - 30927823
Alignment:
Q  427 gaccaataagaagagagaggaacaagattgtcataaaaattatcatcaaatagatgtacatatatcatt 495  Q
    ||||||||||||||||||  |||||| ||||||  ||| || |||| |||| |||||||| ||||||||    
T  30927891 gaccaataagaagagagaaaaacaaggttgtcactaaagttgtcatgaaatggatgtacaaatatcatt 30927823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 431 - 495
Target Start/End: Complemental strand, 39259011 - 39258947
Alignment:
Q  431 aataagaagagagaggaacaagattgtcataaaaattatcatcaaatagatgtacatatatcatt 495  Q
    ||||||||||||||  ||||||||| |||| |||||| ||||  ||| |||||||| ||||||||    
T  39259011 aataagaagagagaaaaacaagattatcattaaaattgtcatggaatggatgtacaaatatcatt 39258947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 427 - 498
Target Start/End: Complemental strand, 2193769 - 2193698
Alignment:
Q  427 gaccaataagaagagagaggaacaagattgtcataaaaattatcatcaaatagatgtacatatatcattact 498  Q
    ||||||||||||||||||  |||||||||||||| ||| || ||||||| | |||||||| |||||| ||||    
T  2193769 gaccaataagaagagagaaaaacaagattgtcatcaaagttgtcatcaattggatgtacaaatatcactact 2193698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 427 - 498
Target Start/End: Original strand, 32901440 - 32901511
Alignment:
Q  427 gaccaataagaagagagaggaacaagattgtcataaaaattatcatcaaatagatgtacatatatcattact 498  Q
    ||||||||| ||||||||  |||||||||||||  |||||||||||||| | |||||||| |||||| ||||    
T  32901440 gaccaataaaaagagagaaaaacaagattgtcaccaaaattatcatcaattggatgtacaaatatcactact 32901511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 427 - 487
Target Start/End: Original strand, 25936351 - 25936411
Alignment:
Q  427 gaccaataagaagagagaggaacaagattgtcataaaaattatcatcaaatagatgtacat 487  Q
    |||||||||||| |||||  ||||||||||||| |||| |||||||||| |||||| ||||    
T  25936351 gaccaataagaaaagagaaaaacaagattgtcacaaaagttatcatcaattagatgcacat 25936411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 427 - 495
Target Start/End: Original strand, 31221524 - 31221592
Alignment:
Q  427 gaccaataagaagagagaggaacaagattgtcataaaaattatcatcaaatagatgtacatatatcatt 495  Q
    ||||||||||||||||||  |||||||||||||  |||||| ||||  ||| |||||||| ||||||||    
T  31221524 gaccaataagaagagagaaaaacaagattgtcactaaaattgtcatggaattgatgtacaaatatcatt 31221592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 427 - 493
Target Start/End: Original strand, 41495124 - 41495190
Alignment:
Q  427 gaccaataagaagagagaggaacaagattgtcataaaaattatcatcaaatagatgtacatatatca 493  Q
    ||||||||||||||||||  |||||  ||||||  |||||||||||||| ||||| |||| ||||||    
T  41495124 gaccaataagaagagagaaaaacaaagttgtcaccaaaattatcatcaattagatatacaaatatca 41495190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 427 - 495
Target Start/End: Complemental strand, 24019931 - 24019863
Alignment:
Q  427 gaccaataagaagagagaggaacaagattgtcataaaaattatcatcaaatagatgtacatatatcatt 495  Q
    ||||||| | ||||||||| |||||| ||||||  ||| || |||| ||||||||||||| ||||||||    
T  24019931 gaccaatcaaaagagagagaaacaaggttgtcaccaaagttgtcattaaatagatgtacaaatatcatt 24019863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 427 - 498
Target Start/End: Original strand, 9011756 - 9011827
Alignment:
Q  427 gaccaataagaagagagaggaacaagattgtcataaaaattatcatcaaatagatgtacatatatcattact 498  Q
    ||||||||||||||||||  |||||||||||||  || ||| |||| |||| |||||||| |||||||||||    
T  9011756 gaccaataagaagagagaaaaacaagattgtcactaacattgtcatgaaatggatgtacaaatatcattact 9011827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 427 - 498
Target Start/End: Complemental strand, 42843304 - 42843233
Alignment:
Q  427 gaccaataagaagagagaggaacaagattgtcataaaaattatcatcaaatagatgtacatatatcattact 498  Q
    ||||||||||||||||||  |||||| ||||||  |||||||||||||| | |||||||| |||||| ||||    
T  42843304 gaccaataagaagagagaaaaacaaggttgtcaccaaaattatcatcaattggatgtacaaatatcactact 42843233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 428 - 498
Target Start/End: Complemental strand, 50777382 - 50777312
Alignment:
Q  428 accaataagaagagagaggaacaagattgtcataaaaattatcatcaaatagatgtacatatatcattact 498  Q
    |||||||||||||||||  |||||| ||||||  |||||| ||||||| | |||||||| |||||||||||    
T  50777382 accaataagaagagagaaaaacaaggttgtcaccaaaattgtcatcaattggatgtacaaatatcattact 50777312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 429 - 498
Target Start/End: Complemental strand, 51193091 - 51193022
Alignment:
Q  429 ccaataagaagagagaggaacaagattgtcataaaaattatcatcaaatagatgtacatatatcattact 498  Q
    ||||||||||||||||  |||||  ||||||| ||| || ||||||||| ||||||||||||||| ||||    
T  51193091 ccaataagaagagagaaaaacaatgttgtcatgaaagttgtcatcaaatggatgtacatatatcactact 51193022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 427 - 495
Target Start/End: Original strand, 26501406 - 26501474
Alignment:
Q  427 gaccaataagaagagagaggaacaagattgtcataaaaattatcatcaaatagatgtacatatatcatt 495  Q
    ||||||||||||||||||  |||||| ||||||| ||| || ||||  |||||||||||| ||||||||    
T  26501406 gaccaataagaagagagaaaaacaaggttgtcattaaagttgtcatgtaatagatgtacaaatatcatt 26501474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 427 - 498
Target Start/End: Complemental strand, 3291385 - 3291314
Alignment:
Q  427 gaccaataagaagagagaggaacaagattgtcataaaaattatcatcaaatagatgtacatatatcattact 498  Q
    |||||| |||||||||||| |||||| || |||| |||||| ||||  ||| |||||||| |||||||||||    
T  3291385 gaccaaaaagaagagagagaaacaaggttatcattaaaattgtcatggaatggatgtacaaatatcattact 3291314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 427 - 498
Target Start/End: Complemental strand, 38627404 - 38627333
Alignment:
Q  427 gaccaataagaagagagaggaacaagattgtcataaaaattatcatcaaatagatgtacatatatcattact 498  Q
    ||||||||||||||| ||  || || |||||| ||||| ||||||  ||||||||||||| |||||||||||    
T  38627404 gaccaataagaagagggaaaaataatattgtcttaaaagttatcacaaaatagatgtacaaatatcattact 38627333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 431 - 493
Target Start/End: Original strand, 3100557 - 3100619
Alignment:
Q  431 aataagaagagagaggaacaagattgtcataaaaattatcatcaaatagatgtacatatatca 493  Q
    ||||||||||||||  |||||||||||||||||| ||||| | | ||| |||||||| |||||    
T  3100557 aataagaagagagaaaaacaagattgtcataaaagttatcttaagatatatgtacatgtatca 3100619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 427 - 493
Target Start/End: Complemental strand, 7078460 - 7078394
Alignment:
Q  427 gaccaataagaagagagaggaacaagattgtcataaaaattatcatcaaatagatgtacatatatca 493  Q
    ||||||| |||| |||||| |||||| ||||||| ||| || || |||||| |||||||||||||||    
T  7078460 gaccaattagaaaagagagaaacaaggttgtcatcaaagttgtcttcaaatggatgtacatatatca 7078394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 427 - 493
Target Start/End: Original strand, 25130814 - 25130880
Alignment:
Q  427 gaccaataagaagagagaggaacaagattgtcataaaaattatcatcaaatagatgtacatatatca 493  Q
    ||||||||||||||||||  |||||| ||||||  ||| || |||| ||||||||||||| ||||||    
T  25130814 gaccaataagaagagagaaaaacaaggttgtcactaaagttgtcatgaaatagatgtacaaatatca 25130880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 427 - 495
Target Start/End: Complemental strand, 6829745 - 6829677
Alignment:
Q  427 gaccaataagaagagagaggaacaagattgtcataaaaattatcatcaaatagatgtacatatatcatt 495  Q
    ||||||||||||||||||  |||||||||||||  ||| || ||||  ||| |||||||| ||||||||    
T  6829745 gaccaataagaagagagaaaaacaagattgtcactaaagttgtcatggaatggatgtacaaatatcatt 6829677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0522 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0522
Description:

Target: scaffold0522; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 427 - 495
Target Start/End: Complemental strand, 2464 - 2396
Alignment:
Q  427 gaccaataagaagagagaggaacaagattgtcataaaaattatcatcaaatagatgtacatatatcatt 495  Q
    ||||||||| ||||||||  | |||||||||||  |||||||||||||| | |||||||| ||||||||    
T  2464 gaccaataaaaagagagaaaatcaagattgtcaccaaaattatcatcaattggatgtacaaatatcatt 2396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0193 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 428 - 492
Target Start/End: Original strand, 24785 - 24849
Alignment:
Q  428 accaataagaagagagaggaacaagattgtcataaaaattatcatcaaatagatgtacatatatc 492  Q
    |||||||||||||||||  || ||| ||||||  ||||||||||| ||||||||||||| |||||    
T  24785 accaataagaagagagaaaaataaggttgtcactaaaattatcatgaaatagatgtacaaatatc 24849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 427 - 495
Target Start/End: Original strand, 16143608 - 16143676
Alignment:
Q  427 gaccaataagaagagagaggaacaagattgtcataaaaattatcatcaaatagatgtacatatatcatt 495  Q
    ||||||||||| ||||||   ||| ||||||||| ||| || |||| ||||||||||||||||||||||    
T  16143608 gaccaataagatgagagaaacacatgattgtcatcaaagttgtcattaaatagatgtacatatatcatt 16143676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 427 - 498
Target Start/End: Original strand, 17489459 - 17489530
Alignment:
Q  427 gaccaataagaagagagaggaacaagattgtcataaaaattatcatcaaatagatgtacatatatcattact 498  Q
    ||||||||||||||||||  |||||||||||||  ||| || ||||||| | |||||||| |||||| ||||    
T  17489459 gaccaataagaagagagaaaaacaagattgtcaccaaagttgtcatcaattggatgtacaaatatcactact 17489530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 427 - 495
Target Start/End: Original strand, 12512904 - 12512972
Alignment:
Q  427 gaccaataagaagagagaggaacaagattgtcataaaaattatcatcaaatagatgtacatatatcatt 495  Q
    ||||||||||||||||||  |||||||||||||  ||| || ||||  ||| |||||||| ||||||||    
T  12512904 gaccaataagaagagagaaaaacaagattgtcactaaagttgtcatggaatggatgtacaaatatcatt 12512972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 427 - 495
Target Start/End: Original strand, 38010983 - 38011051
Alignment:
Q  427 gaccaataagaagagagaggaacaagattgtcataaaaattatcatcaaatagatgtacatatatcatt 495  Q
    |||||||||||||||| |  ||||| |||||||  |||||| ||||  |||||||||||| ||||||||    
T  38010983 gaccaataagaagagaaaaaaacaaaattgtcactaaaattgtcatggaatagatgtacaaatatcatt 38011051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 427 - 493
Target Start/End: Original strand, 33491849 - 33491915
Alignment:
Q  427 gaccaataagaagagagaggaacaagattgtcataaaaattatcatcaaatagatgtacatatatca 493  Q
    ||||||||||||||||||| || ||| |||| || ||| || || |||||| |||||||||||||||    
T  33491849 gaccaataagaagagagagaaataaggttgtaatcaaagttgtcttcaaatggatgtacatatatca 33491915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 427 - 495
Target Start/End: Complemental strand, 3339459 - 3339391
Alignment:
Q  427 gaccaataagaagagagaggaacaagattgtcataaaaattatcatcaaatagatgtacatatatcatt 495  Q
    ||||||||| ||||||||  |||||||||||||  ||| || |||| |||| |||||||| ||||||||    
T  3339459 gaccaataaaaagagagaaaaacaagattgtcactaaagttgtcatgaaatggatgtacaaatatcatt 3339391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 427 - 495
Target Start/End: Complemental strand, 31260 - 31192
Alignment:
Q  427 gaccaataagaagagagaggaacaagattgtcataaaaattatcatcaaatagatgtacatatatcatt 495  Q
    |||||||||||| |||||  |||||  ||||||  |||||||||||  |||||||||||| ||||||||    
T  31260 gaccaataagaacagagaaaaacaaagttgtcactaaaattatcatgtaatagatgtacaaatatcatt 31192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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