View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1607-INSERTION-12 (Length: 742)

Name: NF1607-INSERTION-12
Description: NF1607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1607-INSERTION-12
NF1607-INSERTION-12
[»] chr7 (19 HSPs)
chr7 (8-112)||(25089665-25089770)
chr7 (8-127)||(25083872-25083992)
chr7 (554-664)||(25770285-25770398)
chr7 (551-653)||(39561415-39561517)
chr7 (554-664)||(25775852-25775965)
chr7 (556-684)||(15826213-15826345)
chr7 (8-94)||(25062295-25062382)
chr7 (573-653)||(16728587-16728667)
chr7 (573-653)||(17705659-17705739)
chr7 (555-653)||(21065874-21065973)
chr7 (556-684)||(12625305-12625437)
chr7 (610-684)||(38455420-38455497)
chr7 (233-315)||(40792180-40792261)
chr7 (8-94)||(25071001-25071085)
chr7 (555-684)||(6715823-6715956)
chr7 (177-228)||(25083819-25083870)
chr7 (595-653)||(17715697-17715755)
chr7 (614-653)||(8525141-8525180)
chr7 (610-653)||(41799614-41799657)
[»] chr6 (8 HSPs)
chr6 (555-684)||(31020822-31020954)
chr6 (558-653)||(24122536-24122631)
chr6 (555-639)||(19244289-19244373)
chr6 (556-653)||(18790811-18790909)
chr6 (233-303)||(2029462-2029534)
chr6 (610-653)||(6287930-6287973)
chr6 (621-684)||(35007105-35007171)
chr6 (615-653)||(19222700-19222738)
[»] chr2 (11 HSPs)
chr2 (551-653)||(15424241-15424343)
chr2 (551-653)||(18206651-18206754)
chr2 (551-653)||(11807726-11807828)
chr2 (556-664)||(27333061-27333170)
chr2 (241-319)||(37938647-37938725)
chr2 (232-316)||(15422552-15422636)
chr2 (241-319)||(11806091-11806169)
chr2 (555-648)||(20931103-20931197)
chr2 (233-304)||(31117298-31117369)
chr2 (556-653)||(31119067-31119165)
chr2 (232-299)||(40260576-40260645)
[»] chr5 (9 HSPs)
chr5 (551-684)||(24211123-24211259)
chr5 (232-310)||(24209525-24209603)
chr5 (233-319)||(20943463-20943549)
chr5 (561-653)||(8431252-8431344)
chr5 (558-653)||(11799459-11799554)
chr5 (555-649)||(22552882-22552977)
chr5 (610-684)||(2740917-2740994)
chr5 (610-684)||(13272072-13272149)
chr5 (269-315)||(19550435-19550481)
[»] chr4 (7 HSPs)
chr4 (554-684)||(13505362-13505495)
chr4 (551-677)||(6826379-6826508)
chr4 (555-684)||(38649893-38650026)
chr4 (610-684)||(42562802-42562879)
chr4 (610-684)||(32309964-32310041)
chr4 (557-653)||(39463419-39463516)
chr4 (610-682)||(850245-850320)
[»] chr3 (17 HSPs)
chr3 (551-642)||(8694023-8694114)
chr3 (551-642)||(9045910-9046001)
chr3 (558-684)||(2811385-2811514)
chr3 (594-684)||(41071206-41071299)
chr3 (554-684)||(7627155-7627287)
chr3 (230-315)||(24737305-24737390)
chr3 (610-684)||(34440315-34440392)
chr3 (270-319)||(7629631-7629680)
chr3 (551-646)||(16256293-16256389)
chr3 (233-299)||(19198891-19198957)
chr3 (551-608)||(47829811-47829868)
chr3 (346-405)||(24737407-24737466)
chr3 (233-306)||(12073828-12073901)
chr3 (551-582)||(13330387-13330418)
chr3 (233-288)||(16253435-16253490)
chr3 (233-300)||(11426101-11426170)
chr3 (553-582)||(48085934-48085963)
[»] scaffold0373 (1 HSPs)
scaffold0373 (551-677)||(13765-13894)
[»] scaffold0046 (1 HSPs)
scaffold0046 (555-684)||(74879-75012)
[»] chr1 (12 HSPs)
chr1 (555-684)||(20007367-20007500)
chr1 (555-684)||(24965558-24965691)
chr1 (551-684)||(48997029-48997166)
chr1 (558-653)||(43784909-43785005)
chr1 (559-652)||(32646197-32646291)
chr1 (233-310)||(3376305-3376382)
chr1 (233-306)||(43783108-43783181)
chr1 (610-653)||(28540970-28541013)
chr1 (615-684)||(50907595-50907667)
chr1 (254-299)||(45152424-45152469)
chr1 (232-292)||(51393810-51393870)
chr1 (610-684)||(33298806-33298883)
[»] chr8 (8 HSPs)
chr8 (556-684)||(16995664-16995796)
chr8 (555-682)||(22721448-22721579)
chr8 (610-684)||(10529275-10529352)
chr8 (233-299)||(2640730-2640796)
chr8 (612-684)||(37229966-37230041)
chr8 (610-653)||(14094974-14095017)
chr8 (232-308)||(15910110-15910188)
chr8 (611-653)||(37229927-37229969)
[»] scaffold0010 (2 HSPs)
scaffold0010 (232-306)||(32646-32722)
scaffold0010 (555-653)||(34322-34421)
[»] scaffold1212 (1 HSPs)
scaffold1212 (610-684)||(1404-1481)
[»] scaffold0262 (1 HSPs)
scaffold0262 (556-680)||(9805-9933)
[»] scaffold0408 (1 HSPs)
scaffold0408 (610-653)||(5316-5359)
[»] scaffold0018 (1 HSPs)
scaffold0018 (232-306)||(180731-180805)


Alignment Details
Target: chr7 (Bit Score: 98; Significance: 7e-48; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 8 - 112
Target Start/End: Complemental strand, 25089770 - 25089665
Alignment:
Q  8 cttatgatatggtttctcttgacgg-aagacaactgttaatttctccaatgtgccttttcctcaaggtgtagagtggccttgatatatgattccaaattc 106  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25089770 cttatgatatggtttctcttgacgggaagacaactgttaatttctccaatgtgccttttcctcaaggtgtagagtggccttgatatatgattccaaattc 25089671  T
Q  107 atagaa 112  Q
    ||||||    
T  25089670 atagaa 25089665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 8 - 127
Target Start/End: Complemental strand, 25083992 - 25083872
Alignment:
Q  8 cttatgatatggtttctcttgacgg-aagacaactgttaatttctccaatgtgccttttcctcaaggtgtagagtggccttgatatatgattccaaattc 106  Q
    |||||||||||||||||||||| || |||| || | ||||||||||| |||||||||||||| | ||||||||||||||||||||||| |||||||||||    
T  25083992 cttatgatatggtttctcttgatgggaagataaatattaatttctccgatgtgccttttcctgatggtgtagagtggccttgatatattattccaaattc 25083893  T
Q  107 atagaatccttatggaaattg 127  Q
    |||||||||||||||||||||    
T  25083892 atagaatccttatggaaattg 25083872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 554 - 664
Target Start/End: Original strand, 25770285 - 25770398
Alignment:
Q  554 tttcattgagacattttatcaaacacctatagtgcaattctcaatcagcataaaanctaacaatttctaaaccctaaactaccacattgcactcta---a 650  Q
    ||||||||| ||||||||||||||||||| ||| ||| | ||||||| | ||||| | || |||||||||||||||||||||||||||||||||||   |    
T  25770285 tttcattgaaacattttatcaaacacctagagtccaactttcaatcaacctaaaatcaaataatttctaaaccctaaactaccacattgcactctaaata 25770384  T
Q  651 acatctaaactaca 664  Q
    ||||||||||||||    
T  25770385 acatctaaactaca 25770398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 551 - 653
Target Start/End: Complemental strand, 39561517 - 39561415
Alignment:
Q  551 aattttcattgagacattttatcaaacacctatagtgcaattctcaatcagcataaaanctaacaatttctaaaccctaaactaccacattgcactctaa 650  Q
    ||||||||||||||||||||| |||||||||| ||||||| | |||||||  ||||||  ||||||||| ||||||||||||||||| |||| |||||||    
T  39561517 aattttcattgagacattttaccaaacacctagagtgcaactttcaatcaatataaaatataacaatttgtaaaccctaaactaccagattggactctaa 39561418  T
Q  651 aca 653  Q
    |||    
T  39561417 aca 39561415  T

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Target: chr7; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 554 - 664
Target Start/End: Original strand, 25775852 - 25775965
Alignment:
Q  554 tttcattgagacattttatcaaacacctatagtgcaattctcaatcagcataaaanctaacaatttctaaaccctaaactaccacattgcactcta---a 650  Q
    ||||||| | |||||||||||||||| || ||| ||| | ||||||| | ||||| | ||||||||||||||||||||||||||||||||||||||   |    
T  25775852 tttcattaaaacattttatcaaacacttaaagtccaactttcaatcaacctaaaatcaaacaatttctaaaccctaaactaccacattgcactctaaata 25775951  T
Q  651 acatctaaactaca 664  Q
    ||||||||||||||    
T  25775952 acatctaaactaca 25775965  T

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Target: chr7; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 556 - 684
Target Start/End: Original strand, 15826213 - 15826345
Alignment:
Q  556 tcattgagacattttatcaaacacctatagtgcaattctcaatcagcataaaanctaacaatttctaaaccct-aaactaccacattgcactcta---aa 651  Q
    ||||||||||||||||||||||||||| ||| ||  | ||||||| | ||||| | ||||||||| ||||||| || ||||||||||||||||||   ||    
T  15826213 tcattgagacattttatcaaacacctagagtccatatttcaatcaacttaaaatcaaacaatttcaaaaccctcaatctaccacattgcactctaaacaa 15826312  T
Q  652 catctaaactacattttttaagttaattcatca 684  Q
    ||||||||||||| ||  ||| |||||||||||    
T  15826313 catctaaactacaattcctaacttaattcatca 15826345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 8 - 94
Target Start/End: Complemental strand, 25062382 - 25062295
Alignment:
Q  8 cttatgatatggtttctcttgacgg-aagacaactgttaatttctccaatgtgccttttcctcaaggtgtagagtggccttgatatat 94  Q
    |||||||||| ||||||||||| || |||||||||||||||| |||||| |||||||| ||| ||| |||||| ||||||||||||||    
T  25062382 cttatgatatagtttctcttgatgggaagacaactgttaattactccaacgtgcctttccctgaagatgtagactggccttgatatat 25062295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 573 - 653
Target Start/End: Original strand, 16728587 - 16728667
Alignment:
Q  573 caaacacctatagtgcaattctcaatcagcataaaanctaacaatttctaaaccctaaactaccacattgcactctaaaca 653  Q
    |||||||||| ||||||| |   ||||| ||||||| |||| |||||||||||||||||||||||||||| ||||||||||    
T  16728587 caaacacctagagtgcaacttaaaatcaacataaaatctaataatttctaaaccctaaactaccacattggactctaaaca 16728667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 573 - 653
Target Start/End: Original strand, 17705659 - 17705739
Alignment:
Q  573 caaacacctatagtgcaattctcaatcagcataaaanctaacaatttctaaaccctaaactaccacattgcactctaaaca 653  Q
    |||||||||| ||||||| |   ||||| ||||||| |||| |||||||||||||||||||||||||||| ||||||||||    
T  17705659 caaacacctagagtgcaacttaaaatcaacataaaatctaataatttctaaaccctaaactaccacattggactctaaaca 17705739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 555 - 653
Target Start/End: Original strand, 21065874 - 21065973
Alignment:
Q  555 ttcattgagacattttatcaaacacctatagtgcaattctcaatcagcata-aaanctaacaatttctaaaccctaaactaccacattgcactctaaaca 653  Q
    ||||||||||||||||| |||||||  | ||||||||| |||  || |  | ||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  21065874 ttcattgagacattttaccaaacacacagagtgcaattttcatacaactaagaaatctaacaatttctaaaccctaaactaccacattgtactctaaaca 21065973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 556 - 684
Target Start/End: Complemental strand, 12625437 - 12625305
Alignment:
Q  556 tcattgagacattttatcaaacacctatagtgcaattctcaatcagc-ataaaanctaacaatttctaaaccctaaactaccacattgcactcta---aa 651  Q
    |||||||||||||||| ||||||| || ||||||||| |||| || | |  ||| ||||||||||||||| | |||||||||||||   ||||||   ||    
T  12625437 tcattgagacattttaacaaacacatagagtgcaattttcaaacaactaagaaatctaacaatttctaaatcataaactaccacatattactctaaataa 12625338  T
Q  652 catctaaactacattttttaagttaattcatca 684  Q
    ||||||||||||| ||| ||| |||||||||||    
T  12625337 catctaaactacaatttataacttaattcatca 12625305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 610 - 684
Target Start/End: Complemental strand, 38455497 - 38455420
Alignment:
Q  610 ctaacaatttctaaaccctaaactaccacattgcactctaaaca---tctaaactacattttttaagttaattcatca 684  Q
    |||||||||| |||||||||||||||||||||| ||||||||||   ||||||| ||| ||| |||||||||||||||    
T  38455497 ctaacaatttgtaaaccctaaactaccacattgtactctaaacaacttctaaacaacaatttctaagttaattcatca 38455420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 233 - 315
Target Start/End: Original strand, 40792180 - 40792261
Alignment:
Q  233 catccctacaaatacaaggagacaaatttatattagcacaagtatcatacaaacaaatatacatttatgatccactaacaaaa 315  Q
    |||||||||||| |||  |||| ||||| |||| ||||||| ||||||||||||||||||||||||||||| |||||| ||||    
T  40792180 catccctacaaacacagagagataaatt-atatcagcacaaatatcatacaaacaaatatacatttatgattcactaaaaaaa 40792261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 94
Target Start/End: Complemental strand, 25071085 - 25071001
Alignment:
Q  8 cttatgatatggtttctcttgacgg-aagacaactgttaatttctccaatgtgccttttcctcaaggtgtagagtggccttgatatat 94  Q
    |||||||||||||| ||||||| || |||||||   |||||||||||||||||||||| ||| ||| |||||| ||||||||||||||    
T  25071085 cttatgatatggttactcttgatgggaagacaa---ttaatttctccaatgtgcctttccctgaagatgtagattggccttgatatat 25071001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 555 - 684
Target Start/End: Original strand, 6715823 - 6715956
Alignment:
Q  555 ttcattgagacattttatcaaacacctatagtgcaattctcaatcagcataaaanctaacaatttctaaaccct-aaactaccacattgcactcta---a 650  Q
    ||||||||||||||||||||||||||||  |||||    ||||||| | ||||| | ||||||||| ||| ||| ||||||| |||||||||| ||   |    
T  6715823 ttcattgagacattttatcaaacacctacggtgcagcattcaatcaacttaaaatcaaacaatttcaaaaacctaaaactacgacattgcactttaaaca 6715922  T
Q  651 acatctaaactacattttttaagttaattcatca 684  Q
    |||||||||||||| ||  ||| |||||||||||    
T  6715923 acatctaaactacaattcctaacttaattcatca 6715956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 177 - 228
Target Start/End: Complemental strand, 25083870 - 25083819
Alignment:
Q  177 atgttcaataatagatgggtgagcaaaacttgatcatggtctttccctatgt 228  Q
    |||||||||| ||||||||||||||||||||||||||||| |||| ||||||    
T  25083870 atgttcaatattagatgggtgagcaaaacttgatcatggtttttcactatgt 25083819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 595 - 653
Target Start/End: Original strand, 17715697 - 17715755
Alignment:
Q  595 caatcagcataaaanctaacaatttctaaaccctaaactaccacattgcactctaaaca 653  Q
    |||||| ||||||| |||| ||||| |||| ||||||||||||||||| ||||||||||    
T  17715697 caatcaacataaaatctaataatttataaatcctaaactaccacattggactctaaaca 17715755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 614 - 653
Target Start/End: Original strand, 8525141 - 8525180
Alignment:
Q  614 caatttctaaaccctaaactaccacattgcactctaaaca 653  Q
    ||||||||||||||||||||||||||||| || |||||||    
T  8525141 caatttctaaaccctaaactaccacattgtaccctaaaca 8525180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 610 - 653
Target Start/End: Original strand, 41799614 - 41799657
Alignment:
Q  610 ctaacaatttctaaaccctaaactaccacattgcactctaaaca 653  Q
    |||||| |||||||||||||||||||||||||| || |||||||    
T  41799614 ctaacattttctaaaccctaaactaccacattgtaccctaaaca 41799657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 4e-37; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 555 - 684
Target Start/End: Complemental strand, 31020954 - 31020822
Alignment:
Q  555 ttcattgagacattttatcaaacacctatagtgcaattctcaatcagcataaaanctaacaatttctaaaccctaaactaccacattgcactcta---aa 651  Q
    |||||||||||||||||||||||||||| ||||||| | ||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||   ||    
T  31020954 ttcattgagacattttatcaaacacctagagtgcaaatttcaatcaacataaaatctaacaatttctaaaccctaaactaccacaatgcactctaaacaa 31020855  T
Q  652 catctaaactacattttttaagttaattcatca 684  Q
    ||||||||||||| ||  ||| |||||||||||    
T  31020854 catctaaactacaattcctaacttaattcatca 31020822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 558 - 653
Target Start/End: Complemental strand, 24122631 - 24122536
Alignment:
Q  558 attgagacattttatcaaacacctatagtgcaattctcaatcagcataaaanctaacaatttctaaaccctaaactaccacattgcactctaaaca 653  Q
    |||||||||||||||||||||| || ||||||||| |||| || |  | || |||||||||||||||||||||||||||||||| |||||||||||    
T  24122631 attgagacattttatcaaacacatagagtgcaattttcaaacaactaagaatctaacaatttctaaaccctaaactaccacatttcactctaaaca 24122536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 555 - 639
Target Start/End: Original strand, 19244289 - 19244373
Alignment:
Q  555 ttcattgagacattttatcaaacacctatagtgcaattctcaatcagcataaaanctaacaatttctaaaccctaaactaccaca 639  Q
    |||||||||||||||||||||||||||| |||| ||   ||||||| ||||||| ||||||||||||||| ||||||||| ||||    
T  19244289 ttcattgagacattttatcaaacacctagagtgtaaaattcaatcaacataaaatctaacaatttctaaagcctaaactaacaca 19244373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 556 - 653
Target Start/End: Original strand, 18790811 - 18790909
Alignment:
Q  556 tcattgagacattttatcaaacacctatagtgcaattctcaatcagcata-aaanctaacaatttctaaaccctaaactaccacattgcactctaaaca 653  Q
    |||||||||||||||| ||||||| || ||||||||| |||| || |  | ||| ||||||||||||||||| ||||||| |||||| |||||||||||    
T  18790811 tcattgagacattttaccaaacacatagagtgcaattttcaaacaactaagaaatctaacaatttctaaaccataaactagcacatttcactctaaaca 18790909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 233 - 303
Target Start/End: Complemental strand, 2029534 - 2029462
Alignment:
Q  233 catccctacaaatacaaggagacaaatttatattagcaca--agtatcatacaaacaaatatacatttatgat 303  Q
    ||||||| |||| |||| ||||||||||||||| ||||||  ||||||||||||| || ||||||||||||||    
T  2029534 catccctgcaaacacaaagagacaaatttatatcagcacacaagtatcatacaaaaaactatacatttatgat 2029462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 610 - 653
Target Start/End: Original strand, 6287930 - 6287973
Alignment:
Q  610 ctaacaatttctaaaccctaaactaccacattgcactctaaaca 653  Q
    |||||||||| |||||||||||||||||||||| ||||||||||    
T  6287930 ctaacaatttgtaaaccctaaactaccacattgtactctaaaca 6287973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 621 - 684
Target Start/End: Complemental strand, 35007171 - 35007105
Alignment:
Q  621 taaaccctaaactaccacattgcactctaaaca---tctaaactacattttttaagttaattcatca 684  Q
    ||||||||||| |||||||||| ||||||||||   ||||||| ||| ||| |||||||||||||||    
T  35007171 taaaccctaaattaccacattgtactctaaacaacttctaaacaacaatttctaagttaattcatca 35007105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 615 - 653
Target Start/End: Complemental strand, 19222738 - 19222700
Alignment:
Q  615 aatttctaaaccctaaactaccacattgcactctaaaca 653  Q
    ||||||||||||||||||||||||||  |||||||||||    
T  19222738 aatttctaaaccctaaactaccacatatcactctaaaca 19222700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 9e-35; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 551 - 653
Target Start/End: Original strand, 15424241 - 15424343
Alignment:
Q  551 aattttcattgagacattttatcaaacacctatagtgcaattctcaatcagcataaaanctaacaatttctaaaccctaaactaccacattgcactctaa 650  Q
    |||||||||||||||||||||||||||||||| ||||||| | ||||||| ||||||| |||||||||| |||||||||||||||||||| |||||||||    
T  15424241 aattttcattgagacattttatcaaacacctaaagtgcaactttcaatcaacataaaatctaacaatttataaaccctaaactaccacatagcactctaa 15424340  T
Q  651 aca 653  Q
    |||    
T  15424341 aca 15424343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 551 - 653
Target Start/End: Original strand, 18206651 - 18206754
Alignment:
Q  551 aattttcattgagacattttatcaaacacctatagtgcaattctcaatcagcata-aaanctaacaatttctaaaccctaaactaccacattgcactcta 649  Q
    ||||||||||||||||||||| ||||||| || ||||||||| |||| || |  | ||| ||||||||||||||||||||||||||||||||| ||||||    
T  18206651 aattttcattgagacattttaccaaacacatagagtgcaattttcaaacaactaagaaatctaacaatttctaaaccctaaactaccacattgtactcta 18206750  T
Q  650 aaca 653  Q
    ||||    
T  18206751 aaca 18206754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 551 - 653
Target Start/End: Original strand, 11807726 - 11807828
Alignment:
Q  551 aattttcattgagacattttatcaaacacctatagtgcaattctcaatcagcataaaanctaacaatttctaaaccctaaactaccacattgcactctaa 650  Q
    |||||||| ||||||||||||||||||| ||| ||| ||| | ||||||| | ||||  | ||||||||| |||||||||||||||||||| ||||||||    
T  11807726 aattttcaatgagacattttatcaaacatctagagtccaactttcaatcaacttaaattcaaacaatttcaaaaccctaaactaccacattacactctaa 11807825  T
Q  651 aca 653  Q
    |||    
T  11807826 aca 11807828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 556 - 664
Target Start/End: Complemental strand, 27333170 - 27333061
Alignment:
Q  556 tcattgagacattttatcaaacacctatagtgcaattctcaatcagcata-aaanctaacaatttctaaaccctaaactaccacattgcactctaaacat 654  Q
    |||||||||||||||| ||||||| || ||||||||| |||| || |  | ||| |||||||||| |||||| ||||||||||||||| ||| |||||||    
T  27333170 tcattgagacattttaccaaacacatagagtgcaattttcaaacaactaagaaatctaacaatttttaaaccataaactaccacattgtactgtaaacat 27333071  T
Q  655 ctaaactaca 664  Q
    ||||||||||    
T  27333070 ctaaactaca 27333061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 241 - 319
Target Start/End: Original strand, 37938647 - 37938725
Alignment:
Q  241 caaatacaaggagacaaatttatattagcacaagtatcatacaaacaaatatacatttatgatccactaacaaaataag 319  Q
    |||| |||| ||||||||||||||  |||||||||||  ||||||||||||||||||| ||||||||||| ||||||||    
T  37938647 caaacacaaagagacaaatttataccagcacaagtatattacaaacaaatatacatttgtgatccactaaaaaaataag 37938725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 232 - 316
Target Start/End: Original strand, 15422552 - 15422636
Alignment:
Q  232 tcatccctacaaatacaaggagacaaatttatattagcacaagtatcatacaaacaaatatacatttatgatccactaacaaaat 316  Q
    |||||| | |||| |||| ||||||||||||||| ||   ||||||||||||||||||||||||||||||| ||||||| |||||    
T  15422552 tcatccttgcaaacacaaagagacaaatttatatcagggaaagtatcatacaaacaaatatacatttatgaaccactaaaaaaat 15422636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 241 - 319
Target Start/End: Original strand, 11806091 - 11806169
Alignment:
Q  241 caaatacaaggagacaaatttatattagcacaagtatcatacaaacaaatatacatttatgatccactaacaaaataag 319  Q
    |||| |||| ||||||||||||||| |||| ||||||||||| ||||| |||||||||| ||| |||||| ||||||||    
T  11806091 caaacacaaagagacaaatttatatcagcataagtatcatacgaacaactatacatttacgattcactaaaaaaataag 11806169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 555 - 648
Target Start/End: Complemental strand, 20931197 - 20931103
Alignment:
Q  555 ttcattgagacattttatcaaacacctatagtgcaattctcaatcagcata-aaanctaacaatttctaaaccctaaactaccacattgcactct 648  Q
    ||||||||||||||||| ||||||| || ||||||||| |||| || |  | ||| ||||| |||||||| |||||||||||||||||| |||||    
T  20931197 ttcattgagacattttaccaaacacatagagtgcaattttcaaacaactaagaaatctaacgatttctaatccctaaactaccacattgtactct 20931103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 233 - 304
Target Start/End: Original strand, 31117298 - 31117369
Alignment:
Q  233 catccctacaaatacaaggagacaaatttatattagcacaagtatcatacaaacaaatatacatttatgatc 304  Q
    ||||||| |||| |||| || |||||||||||| ||||||||||| |||||||||| |||||||||| ||||    
T  31117298 catccctgcaaacacaaagaaacaaatttatatcagcacaagtattatacaaacaactatacatttacgatc 31117369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 556 - 653
Target Start/End: Original strand, 31119067 - 31119165
Alignment:
Q  556 tcattgagacattttatcaaacacctatagtgcaattctcaatcagcataaaanctaacaatttctaa-accctaaactaccacattgcactctaaaca 653  Q
    |||||||||||||||||||||||| || | ||||| | ||||||| | ||||| | ||||||||| || |||  ||||||||| ||| |||||||||||    
T  31119067 tcattgagacattttatcaaacacatacaatgcaactttcaatcaacttaaaatcaaacaatttcaaatacctaaaactaccatatttcactctaaaca 31119165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 232 - 299
Target Start/End: Complemental strand, 40260645 - 40260576
Alignment:
Q  232 tcatccctacaaatacaaggagacaaatttatattagcaca--agtatcatacaaacaaatatacattta 299  Q
    |||||| | |||| |||| ||||||||||||||| ||||||  ||||||||||||| || ||||||||||    
T  40260645 tcatccttgcaaacacaaagagacaaatttatatcagcacacaagtatcatacaaaaaactatacattta 40260576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 2e-32; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 551 - 684
Target Start/End: Original strand, 24211123 - 24211259
Alignment:
Q  551 aattttcattgagacattttatcaaacacctatagtgcaattctcaatcagcataaaanctaacaatttctaaaccctaaactaccacattgcactcta- 649  Q
    |||||| ||||||| ||||||||||||||||| ||||||| | ||||||| ||||||| ||||||||||||||||  ||||||||||||||||||||||     
T  24211123 aatttttattgagatattttatcaaacacctagagtgcaaatttcaatcaacataaaatctaacaatttctaaactataaactaccacattgcactctaa 24211222  T
Q  650 --aacatctaaactacattttttaagttaattcatca 684  Q
      ||||||||||||||| ||  ||| |||||||||||    
T  24211223 acaacatctaaactacaattcctaacttaattcatca 24211259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 232 - 310
Target Start/End: Original strand, 24209525 - 24209603
Alignment:
Q  232 tcatccctacaaatacaaggagacaaatttatattagcacaagtatcatacaaacaaatatacatttatgatccactaa 310  Q
    ||||||||||||| |||| ||||||||||||||| | || |||||||||||||||||||||||||||||||| ||||||    
T  24209525 tcatccctacaaacacaaagagacaaatttatatcaacataagtatcatacaaacaaatatacatttatgattcactaa 24209603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 233 - 319
Target Start/End: Complemental strand, 20943549 - 20943463
Alignment:
Q  233 catccctacaaatacaaggagacaaatttatattagcacaagtatcatacaaacaaatatacatttatgatccactaacaaaataag 319  Q
    ||||||| |||| |||| ||||||||||||||| |||||||||||||||||||||| |||  |||||||||||||||| ||| ||||    
T  20943549 catccctgcaaacacaaagagacaaatttatatcagcacaagtatcatacaaacaactatttatttatgatccactaaaaaattaag 20943463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 561 - 653
Target Start/End: Complemental strand, 8431344 - 8431252
Alignment:
Q  561 gagacattttatcaaacacctatagtgcaattctcaatcagcataaaanctaacaatttctaaaccctaaactaccacattgcactctaaaca 653  Q
    |||||||||||||||||||||| ||| ||| | || |||| | ||||| |||||||||||||||||| |||||| | |||||||  |||||||    
T  8431344 gagacattttatcaaacacctagagtccaactttcgatcaacttaaaatctaacaatttctaaacccaaaactatcgcattgcatcctaaaca 8431252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 558 - 653
Target Start/End: Complemental strand, 11799554 - 11799459
Alignment:
Q  558 attgagacattttatcaaacacctatagtgcaattctcaatcagcataaaanctaacaatttctaaaccctaaactaccacattgcactctaaaca 653  Q
    ||||| |||||||| ||||| |||| |||  || | ||||||| | ||||| ||||||| || |||||||||||||||||||||||| ||||||||    
T  11799554 attgaaacattttaccaaactcctagagtctaactttcaatcaacttaaaatctaacaaattttaaaccctaaactaccacattgcattctaaaca 11799459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 555 - 649
Target Start/End: Original strand, 22552882 - 22552977
Alignment:
Q  555 ttcattgagacattttatcaaacacctatagtgcaattctcaatcagcataaaanctaacaatttctaa-accctaaactaccacattgcactcta 649  Q
    |||||||||||||||||| ||||||||| ||||||| | ||||||| | ||||| | ||||||||| || |||  ||||||||||||| |||||||    
T  22552882 ttcattgagacattttattaaacacctacagtgcaactttcaatcaacttaaaatcaaacaatttcgaatacctaaaactaccacatttcactcta 22552977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 610 - 684
Target Start/End: Complemental strand, 2740994 - 2740917
Alignment:
Q  610 ctaacaatttctaaaccctaaactaccacattgcactctaaaca---tctaaactacattttttaagttaattcatca 684  Q
    |||||||||| |||||||||||||||||||||| ||||||||||   ||||||| ||| ||  |||||||||||||||    
T  2740994 ctaacaatttgtaaaccctaaactaccacattgtactctaaacaacttctaaacaacaattcctaagttaattcatca 2740917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 610 - 684
Target Start/End: Complemental strand, 13272149 - 13272072
Alignment:
Q  610 ctaacaatttctaaaccctaaactaccacattgcactctaaaca---tctaaactacattttttaagttaattcatca 684  Q
    |||||||| | |||||||||||||||||||||| ||||||||||   ||||||| ||| ||  |||||||||||||||    
T  13272149 ctaacaatatgtaaaccctaaactaccacattgtactctaaacaacttctaaacaacaattcctaagttaattcatca 13272072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 269 - 315
Target Start/End: Complemental strand, 19550481 - 19550435
Alignment:
Q  269 cacaagtatcatacaaacaaatatacatttatgatccactaacaaaa 315  Q
    ||||||||||||| |||||| ||||||||||||||||||||| ||||    
T  19550481 cacaagtatcatagaaacaactatacatttatgatccactaaaaaaa 19550435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 3e-28; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 554 - 684
Target Start/End: Original strand, 13505362 - 13505495
Alignment:
Q  554 tttcattgagacattttatcaaacacctatagtgcaattctcaatcagcataaaanctaacaatttctaaaccctaaactaccacattgcactct---aa 650  Q
    ||||||||||||||||||||||||||||| |||  || | ||||||| | ||||| ||||||||||||||||||||||||||||||||||| |||    |    
T  13505362 tttcattgagacattttatcaaacacctagagtctaactttcaatcaacttaaaatctaacaatttctaaaccctaaactaccacattgcattcttaaca 13505461  T
Q  651 acatctaaactacattttttaagttaattcatca 684  Q
    |||||||||||||| ||  ||| |||||||||||    
T  13505462 acatctaaactacagttcataacttaattcatca 13505495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 551 - 677
Target Start/End: Original strand, 6826379 - 6826508
Alignment:
Q  551 aattttcattgagacattttatcaaacacctatagtgcaattctcaatcagcataaaanctaacaatttctaaaccctaaactaccacattgcactcta- 649  Q
    |||||||||| ||||||||||||||| ||||| ||| ||| | ||||||  | ||||| | |||||||||||||||||||| ||||||| |||||||||     
T  6826379 aattttcatttagacattttatcaaatacctagagtccaactttcaatctacttaaaatcaaacaatttctaaaccctaaattaccacactgcactctaa 6826478  T
Q  650 --aacatctaaactacattttttaagttaa 677  Q
      ||||||||||||||| ||| ||| ||||    
T  6826479 acaacatctaaactacaatttctaacttaa 6826508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 555 - 684
Target Start/End: Complemental strand, 38650026 - 38649893
Alignment:
Q  555 ttcattgagacattttatcaaacacctatagtgcaattctcaatcagcataaaanctaacaatttctaaaccct-aaactaccacattgcactcta---a 650  Q
    ||||||||||||||||| |||||||||| ||| ||  | ||||||| | ||||| | ||||||||| ||| ||| ||||||||||||| |||||||   |    
T  38650026 ttcattgagacattttaacaaacacctagagtccatatttcaatcaacttaaaatcaaacaatttcaaaatcctaaaactaccacatttcactctaaaca 38649927  T
Q  651 acatctaaactacattttttaagttaattcatca 684  Q
    |||||||||||||| ||  ||| |||||||||||    
T  38649926 acatctaaactacaattcctaacttaattcatca 38649893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 610 - 684
Target Start/End: Original strand, 42562802 - 42562879
Alignment:
Q  610 ctaacaatttctaaaccctaaactaccacattgcactcta---aacatctaaactacattttttaagttaattcatca 684  Q
    |||||||||| |||||||||||||||||||||| ||||||   ||||||||||| ||| ||| |||||||||||||||    
T  42562802 ctaacaatttgtaaaccctaaactaccacattgtactctaaacaacatctaaacaacaatttctaagttaattcatca 42562879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 610 - 684
Target Start/End: Original strand, 32309964 - 32310041
Alignment:
Q  610 ctaacaatttctaaaccctaaactaccacattgcactctaaaca---tctaaactacattttttaagttaattcatca 684  Q
    |||||||||| ||||||| |||||||||||||| ||||||||||   ||||||| ||| ||  |||||||||||||||    
T  32309964 ctaacaatttgtaaacccgaaactaccacattgtactctaaacaacttctaaacaacaattcctaagttaattcatca 32310041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 557 - 653
Target Start/End: Complemental strand, 39463516 - 39463419
Alignment:
Q  557 cattgagacattttatcaaacacctatagtgcaattctcaatcagc-ataaaanctaacaatttctaaaccctaaactaccacattgcactctaaaca 653  Q
    ||||||||||||||| ||||||| ||  |||||||| |||| || | |   || |||||||||| | |||||||||||||||||||| ||||||||||    
T  39463516 cattgagacattttaccaaacacatagtgtgcaattttcaaacaactaggtaatctaacaatttgtgaaccctaaactaccacattgtactctaaaca 39463419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 610 - 682
Target Start/End: Original strand, 850245 - 850320
Alignment:
Q  610 ctaacaatttctaaaccctaaactaccacattgcactctaaaca---tctaaactacattttttaagttaattcat 682  Q
    ||||| |||| |||||||||||||||| ||||| ||||||||||   ||||||| ||| ||  |||||||||||||    
T  850245 ctaacgatttgtaaaccctaaactaccgcattgtactctaaacaacttctaaacaacaattcctaagttaattcat 850320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 3e-28; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 551 - 642
Target Start/End: Original strand, 8694023 - 8694114
Alignment:
Q  551 aattttcattgagacattttatcaaacacctatagtgcaattctcaatcagcataaaanctaacaatttctaaaccctaaactaccacattg 642  Q
    |||||||||| ||||||||||||||||||||| ||||||| | ||||||| ||||||| |||||||||||||||||||||||||||| ||||    
T  8694023 aattttcattaagacattttatcaaacacctagagtgcaactttcaatcaacataaaatctaacaatttctaaaccctaaactaccatattg 8694114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 551 - 642
Target Start/End: Original strand, 9045910 - 9046001
Alignment:
Q  551 aattttcattgagacattttatcaaacacctatagtgcaattctcaatcagcataaaanctaacaatttctaaaccctaaactaccacattg 642  Q
    |||||||||| ||||||||||||||||||||| ||||||| | ||||||| ||||||| |||||||||||||||||||||||||||| ||||    
T  9045910 aattttcattaagacattttatcaaacacctagagtgcaactttcaatcaacataaaatctaacaatttctaaaccctaaactaccatattg 9046001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 558 - 684
Target Start/End: Original strand, 2811385 - 2811514
Alignment:
Q  558 attgagacattttatcaaacacctatagtgcaattctcaatcagcataaaanctaacaatttctaaaccctaaactaccacattgcactcta---aacat 654  Q
    |||||||| |||||||||||||||| ||| ||| | ||||||| | ||||| |||||||||| |||||||||||||||||||||||| ||||   |||||    
T  2811385 attgagacgttttatcaaacacctagagtccaactttcaatcaacttaaaatctaacaatttttaaaccctaaactaccacattgcattctaaacaacat 2811484  T
Q  655 ctaaactacattttttaagttaattcatca 684  Q
    |||||||||| ||  ||| |||||||||||    
T  2811485 ctaaactacaattcctaacttaattcatca 2811514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 594 - 684
Target Start/End: Original strand, 41071206 - 41071299
Alignment:
Q  594 tcaatcagcataaaanctaacaatttctaaaccctaaactaccacattgcactcta---aacatctaaactacattttttaagttaattcatca 684  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||   ||||||||||||||| || |||| |||||||||||    
T  41071206 tcaatcaacataaaatctaacaatttctaaaccctaaactaccacattgcactctaaataacatctaaactacaattcttaacttaattcatca 41071299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 554 - 684
Target Start/End: Complemental strand, 7627287 - 7627155
Alignment:
Q  554 tttcattgagacattttatcaaacacctatagtgcaattctcaatcagcataaaanctaacaatttctaaaccctaaactaccacattgcactcta---a 650  Q
    |||| ||||||||||||||| |||||||| ||| ||| | ||||||| | ||||| |||||||||||||||||||||| | ||||| |||| ||||   |    
T  7627287 tttcgttgagacattttatcgaacacctagagt-caactttcaatcaacttaaaatctaacaatttctaaaccctaaatttccacaatgcattctaaaca 7627189  T
Q  651 acatctaaactacattttttaagttaattcatca 684  Q
    |||||||||||||| ||  ||| |||||||||||    
T  7627188 acatctaaactacaattcctaacttaattcatca 7627155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 230 - 315
Target Start/End: Original strand, 24737305 - 24737390
Alignment:
Q  230 aatcatccctacaaatacaaggagacaaatttatattagcacaagtatcatacaaacaaatatacatttatgatccactaacaaaa 315  Q
    ||||||||||||||| || | |||||| | | |||| |||||||| |||||||||||||||||||||||||||||| |||| ||||    
T  24737305 aatcatccctacaaacactaagagacataataatatcagcacaagaatcatacaaacaaatatacatttatgatccgctaaaaaaa 24737390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 610 - 684
Target Start/End: Original strand, 34440315 - 34440392
Alignment:
Q  610 ctaacaatttctaaaccctaaactaccacattgcactctaaaca---tctaaactacattttttaagttaattcatca 684  Q
    |||||||||| |||||||||||||||||||||| ||||||||||   ||||||| ||| ||| |||||||||||||||    
T  34440315 ctaacaatttgtaaaccctaaactaccacattgtactctaaacaacttctaaacaacaatttctaagttaattcatca 34440392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 270 - 319
Target Start/End: Complemental strand, 7629680 - 7629631
Alignment:
Q  270 acaagtatcatacaaacaaatatacatttatgatccactaacaaaataag 319  Q
    ||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  7629680 acaagtatcatacaaacaactatacatttatgatccactaaaaaaataag 7629631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 551 - 646
Target Start/End: Original strand, 16256293 - 16256389
Alignment:
Q  551 aattttcattgagacattttatcaaacacctatagtgcaattctcaatcagcataaaanctaacaatttctaaaccct-aaactaccacattgcact 646  Q
    |||||||||||||| ||||||||||||||||| ||| ||  | ||||||| | ||||| | ||||||||| ||||||| ||| ||||||||||||||    
T  16256293 aattttcattgagaaattttatcaaacacctagagttcatctttcaatcaacttaaaatcaaacaatttcaaaaccctaaaattaccacattgcact 16256389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 233 - 299
Target Start/End: Complemental strand, 19198957 - 19198891
Alignment:
Q  233 catccctacaaatacaaggagacaaatttatattagcacaagtatcatacaaacaaatatacattta 299  Q
    ||||||| |||| |||| || |||||||||||| ||||||||||| |||||||||| ||||||||||    
T  19198957 catccctgcaaacacaaagaaacaaatttatatcagcacaagtattatacaaacaactatacattta 19198891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 551 - 608
Target Start/End: Original strand, 47829811 - 47829868
Alignment:
Q  551 aattttcattgagacattttatcaaacacctatagtgcaattctcaatcagcataaaa 608  Q
    |||||||||||||||||| ||||||||||||| ||||||| | ||||||| |||||||    
T  47829811 aattttcattgagacattatatcaaacacctagagtgcaactttcaatcaacataaaa 47829868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 346 - 405
Target Start/End: Original strand, 24737407 - 24737466
Alignment:
Q  346 tcatgtaaccaccaataactttaatctttgcgctcgaggtaagagaaagttgagagtaca 405  Q
    ||||||||||||||| |||||||||||||||   ||||||||||||||| ||| ||||||    
T  24737407 tcatgtaaccaccaacaactttaatctttgcatacgaggtaagagaaagctgaaagtaca 24737466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 233 - 306
Target Start/End: Complemental strand, 12073901 - 12073828
Alignment:
Q  233 catccctacaaatacaaggagacaaatttatattagcacaagtatcatacaaacaaatatacatttatgatcca 306  Q
    |||||||  ||| |||| || |||||||||||| ||||||| ||| |||||||||| |||||||||| ||||||    
T  12073901 catccctgtaaacacaaagaaacaaatttatatcagcacaaatattatacaaacaactatacatttacgatcca 12073828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 551 - 582
Target Start/End: Complemental strand, 13330418 - 13330387
Alignment:
Q  551 aattttcattgagacattttatcaaacaccta 582  Q
    ||||||||||||||||||||||||||||||||    
T  13330418 aattttcattgagacattttatcaaacaccta 13330387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 233 - 288
Target Start/End: Original strand, 16253435 - 16253490
Alignment:
Q  233 catccctacaaatacaaggagacaaatttatattagcacaagtatcatacaaacaa 288  Q
    |||||||||||| |||| ||||||||||||||| |  | |||||||||||||||||    
T  16253435 catccctacaaacacaatgagacaaatttatatcaataaaagtatcatacaaacaa 16253490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 233 - 300
Target Start/End: Original strand, 11426101 - 11426170
Alignment:
Q  233 catccctacaaatacaaggagacaaatttatattag--cacaagtatcatacaaacaaatatacatttat 300  Q
    ||||||| |||| |||| ||||||||||||||||||  ||||  ||||||||||| || |||||||||||    
T  11426101 catccctgcaaacacaaagagacaaatttatattagcacacacatatcatacaaaaaactatacatttat 11426170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 553 - 582
Target Start/End: Original strand, 48085934 - 48085963
Alignment:
Q  553 ttttcattgagacattttatcaaacaccta 582  Q
    ||||||||||||||||||||||||||||||    
T  48085934 ttttcattgagacattttatcaaacaccta 48085963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0373 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 551 - 677
Target Start/End: Complemental strand, 13894 - 13765
Alignment:
Q  551 aattttcattgagacattttatcaaacacctatagtgcaattctcaatcagcataaaanctaacaatttctaaaccctaaactaccacattgcactcta- 649  Q
    |||||||||| ||||||||||||||| ||||| ||| ||| | ||||||  | ||||| | |||||||||||||||||||| ||||||| |||||||||     
T  13894 aattttcatttagacattttatcaaatacctagagtccaactttcaatctacttaaaatcaaacaatttctaaaccctaaattaccacactgcactctaa 13795  T
Q  650 --aacatctaaactacattttttaagttaa 677  Q
      ||||||||||||||| ||| ||| ||||    
T  13794 acaacatctaaactacaatttctaacttaa 13765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 555 - 684
Target Start/End: Original strand, 74879 - 75012
Alignment:
Q  555 ttcattgagacattttatcaaacacctatagtgcaattctcaatcagcataaaanctaacaatttctaa-accctaaactaccacattgcactcta---a 650  Q
    |||||||||||||||||||||||||||| ||| ||  | ||||||| | ||||| | ||||||||| || |||  ||||||||||||| |||||||   |    
T  74879 ttcattgagacattttatcaaacacctagagttcatatttcaatcaacttaaaatcaaacaatttcaaatacctaaaactaccacatttcactctaaaca 74978  T
Q  651 acatctaaactacattttttaagttaattcatca 684  Q
    ||||||||| |||||||| ||| |||||| ||||    
T  74979 acatctaaaatacattttctaacttaatttatca 75012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 3e-16; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 555 - 684
Target Start/End: Original strand, 20007367 - 20007500
Alignment:
Q  555 ttcattgagacattttatcaaacacctatagtgcaattctcaatcagcataaaanctaacaatttctaa-accctaaactaccacattgcactcta---a 650  Q
    |||||||||||||||||||||||||||| ||| ||  | ||||||| | ||||| | ||||||||| || |||  ||||||||||||| |||||||   |    
T  20007367 ttcattgagacattttatcaaacacctagagttcatatttcaatcaacttaaaatcaaacaatttcaaatacctaaaactaccacatttcactctaaaca 20007466  T
Q  651 acatctaaactacattttttaagttaattcatca 684  Q
    ||||||||| |||||||| ||| |||||| ||||    
T  20007467 acatctaaaatacattttctaacttaatttatca 20007500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 555 - 684
Target Start/End: Original strand, 24965558 - 24965691
Alignment:
Q  555 ttcattgagacattttatcaaacacctatagtgcaattctcaatcagcataaaanctaacaatttctaa-accctaaactaccacattgcactcta---a 650  Q
    |||||||||||||||||||||||||||| ||| ||  | ||||||| | ||||| | ||||||||| || |||  ||||||||||||| |||||||   |    
T  24965558 ttcattgagacattttatcaaacacctagagttcatatttcaatcaacttaaaatcaaacaatttcaaatacctaaaactaccacatttcactctaaaca 24965657  T
Q  651 acatctaaactacattttttaagttaattcatca 684  Q
    ||||||||| |||||||| ||| |||||| ||||    
T  24965658 acatctaaaatacattttctaacttaatttatca 24965691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 551 - 684
Target Start/End: Complemental strand, 48997166 - 48997029
Alignment:
Q  551 aattttcattgagacattttatcaaacacctatagtgcaattctcaatcagc-ataaaanctaacaatttctaaaccctaaactaccacattgcactcta 649  Q
    ||||| ||| ||||||||||| ||||||| ||  |||||||| |||| || | |   || |||||||||| |||||||||||||||||||||| ||||||    
T  48997166 aatttccatagagacattttaccaaacacatagtgtgcaattttcaaacaactaggtaatctaacaatttgtaaaccctaaactaccacattgtactcta 48997067  T
Q  650 aaca---tctaaactacattttttaagttaattcatca 684  Q
    ||||   ||||||| ||| ||| |||||||||||||||    
T  48997066 aacaacttctaaacaacaatttctaagttaattcatca 48997029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 558 - 653
Target Start/End: Original strand, 43784909 - 43785005
Alignment:
Q  558 attgagacattttatcaaacacctatagtgcaattctcaatcagcataaaan-ctaacaatttctaaaccctaaactaccacattgcactctaaaca 653  Q
    |||||||||||||| ||||||| || ||||||||| |||| || |  | ||  |||||||||||||||| |||||||||||||||| ||||||||||    
T  43784909 attgagacattttaccaaacacatagagtgcaattttcaaacaactaagaattctaacaatttctaaacactaaactaccacattgtactctaaaca 43785005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 559 - 652
Target Start/End: Complemental strand, 32646291 - 32646197
Alignment:
Q  559 ttgagacattttatcaaacacctatagtgcaattctcaatcagcataaaanctaacaatttctaaaccct-aaactaccacattgcactctaaac 652  Q
    |||||||||||||||||||||||| ||||||| | ||||| | | ||||| | ||||||||| | | ||| |||||||| |||||||||||||||    
T  32646291 ttgagacattttatcaaacacctacagtgcaactttcaataaacttaaaatcaaacaatttcaagatcctaaaactaccgcattgcactctaaac 32646197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 233 - 310
Target Start/End: Original strand, 3376305 - 3376382
Alignment:
Q  233 catccctacaaatacaaggagacaaatttatattagcacaagtatcatacaaacaaatatacatttatgatccactaa 310  Q
    ||||||| |||| |||| || ||||| ||||||||||||| |||| |||||||||| |||||||| | ||||||||||    
T  3376305 catccctgcaaacacaaagaaacaaaattatattagcacatgtattatacaaacaactatacattaacgatccactaa 3376382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 233 - 306
Target Start/End: Original strand, 43783108 - 43783181
Alignment:
Q  233 catccctacaaatacaaggagacaaatttatattagcacaagtatcatacaaacaaatatacatttatgatcca 306  Q
    ||||||| |||| |||| || |||||||||||| ||||||||||| |||||||||| |||| ||||| ||||||    
T  43783108 catccctgcaaacacaaagaaacaaatttatatcagcacaagtattatacaaacaattataaatttacgatcca 43783181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 610 - 653
Target Start/End: Original strand, 28540970 - 28541013
Alignment:
Q  610 ctaacaatttctaaaccctaaactaccacattgcactctaaaca 653  Q
    |||||||||| |||||||||||||||||||||| ||||||||||    
T  28540970 ctaacaatttgtaaaccctaaactaccacattgtactctaaaca 28541013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 615 - 684
Target Start/End: Complemental strand, 50907667 - 50907595
Alignment:
Q  615 aatttctaaaccctaaactaccacattgcactcta---aacatctaaactacattttttaagttaattcatca 684  Q
    ||||| |||||||||||||||||||||| ||||||   ||||||||||| ||| ||  |||||||||||||||    
T  50907667 aatttgtaaaccctaaactaccacattgtactctaaacaacatctaaacaacaattcctaagttaattcatca 50907595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 254 - 299
Target Start/End: Complemental strand, 45152469 - 45152424
Alignment:
Q  254 acaaatttatattagcacaagtatcatacaaacaaatatacattta 299  Q
    |||||||||||| ||||||||||| |||||||||| ||||||||||    
T  45152469 acaaatttatatcagcacaagtattatacaaacaactatacattta 45152424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 232 - 292
Target Start/End: Complemental strand, 51393870 - 51393810
Alignment:
Q  232 tcatccctacaaatacaaggagacaaatttatattagcacaagtatcatacaaacaaatat 292  Q
    ||||||||||||| |||| |||||| | | |||| |||||||||||||| |||||||||||    
T  51393870 tcatccctacaaacacaaagagacacaataatatcagcacaagtatcatgcaaacaaatat 51393810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 610 - 684
Target Start/End: Original strand, 33298806 - 33298883
Alignment:
Q  610 ctaacaatttctaaaccctaaactaccacattgcactctaaaca---tctaaactacattttttaagttaattcatca 684  Q
    |||||||||| |||||||||||||| ||||||| ||| ||||||   ||||||| ||| ||  |||||||||||||||    
T  33298806 ctaacaatttgtaaaccctaaactagcacattgtactttaaacaacttctaaacaacaattcctaagttaattcatca 33298883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 556 - 684
Target Start/End: Complemental strand, 16995796 - 16995664
Alignment:
Q  556 tcattgagacattttatcaaacacctatagtgcaattctcaatcagcataaaanctaacaatttctaaaccct-aaactaccacattgcactcta---aa 651  Q
    ||||||||||||||||||||||||||| | ||||| | |||||||   |||||   ||||||||| ||| ||| |||||||| ||||||||||||   ||    
T  16995796 tcattgagacattttatcaaacacctacaatgcaactttcaatcaatttaaaattaaacaatttcaaaaacctaaaactacctcattgcactctaaacaa 16995697  T
Q  652 catctaaactacattttttaagttaattcatca 684  Q
    ||||||||||||| ||  ||| |||||||||||    
T  16995696 catctaaactacaattcctaacttaattcatca 16995664  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 555 - 682
Target Start/End: Complemental strand, 22721579 - 22721448
Alignment:
Q  555 ttcattgagacattttatcaaacacctatagtgcaattctcaatcagcataaaanctaacaatttctaaaccct-aaactaccacattgcactcta---a 650  Q
    ||||||||||||||||| | |||||||| ||| ||  | ||||| | | ||||| | ||||||||| ||||||| ||||||||||||| |||||||   |    
T  22721579 ttcattgagacattttaactaacacctaaagtccatatttcaatgaacttaaaatcaaacaatttcaaaaccctaaaactaccacatttcactctaaaca 22721480  T
Q  651 acatctaaactacattttttaagttaattcat 682  Q
    |||||||||||||| || |||| |||||||||    
T  22721479 acatctaaactacaattcttaacttaattcat 22721448  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 610 - 684
Target Start/End: Complemental strand, 10529352 - 10529275
Alignment:
Q  610 ctaacaatttctaaaccctaaactaccacattgcactctaaaca---tctaaactacattttttaagttaattcatca 684  Q
    |||||||||| |||||||||||||||||||||| ||||||||||   ||||||| ||| ||  |||||||||||||||    
T  10529352 ctaacaatttgtaaaccctaaactaccacattgtactctaaacaacttctaaacaacaattcctaagttaattcatca 10529275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 233 - 299
Target Start/End: Complemental strand, 2640796 - 2640730
Alignment:
Q  233 catccctacaaatacaaggagacaaatttatattagcacaagtatcatacaaacaaatatacattta 299  Q
    ||||||| |||| |||| ||||||||||||||| | || ||||||||||||||||| ||||||||||    
T  2640796 catccctgcaaacacaaagagacaaatttatatcatcataagtatcatacaaacaactatacattta 2640730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 612 - 684
Target Start/End: Original strand, 37229966 - 37230041
Alignment:
Q  612 aacaatttctaaaccctaaactaccacattgcactctaaaca---tctaaactacattttttaagttaattcatca 684  Q
    ||||| ||||||||||||||||||||||||| ||||||||||   ||||||| ||| ||  |||||||||||||||    
T  37229966 aacaacttctaaaccctaaactaccacattgtactctaaacaacttctaaacaacaattcctaagttaattcatca 37230041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 610 - 653
Target Start/End: Complemental strand, 14095017 - 14094974
Alignment:
Q  610 ctaacaatttctaaaccctaaactaccacattgcactctaaaca 653  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||    
T  14095017 ctaacaatttcaaaaccctaaactaccacattgtactctaaaca 14094974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 232 - 308
Target Start/End: Original strand, 15910110 - 15910188
Alignment:
Q  232 tcatccctacaaatacaaggagacaaatttatattag--cacaagtatcatacaaacaaatatacatttatgatccact 308  Q
    |||| ||| |||| |||| ||||||||||||||||||  ||||||||||||||||| || |||||||||| ||| ||||    
T  15910110 tcattcctgcaaacacaaagagacaaatttatattagcacacaagtatcatacaaaaaactatacatttacgattcact 15910188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 611 - 653
Target Start/End: Original strand, 37229927 - 37229969
Alignment:
Q  611 taacaatttctaaaccctaaactaccacattgcactctaaaca 653  Q
    ||||||||| |||||||||||||||||||||| ||||||||||    
T  37229927 taacaatttgtaaaccctaaactaccacattgtactctaaaca 37229969  T

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Target: scaffold0010 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 232 - 306
Target Start/End: Original strand, 32646 - 32722
Alignment:
Q  232 tcatccctacaaatacaaggagacaaat--ttatattagcacaagtatcatacaaacaaatatacatttatgatcca 306  Q
    |||||||||||||||||| || ||||||  |||||| ||||||||||| |||||||||| || ||||||||||||||    
T  32646 tcatccctacaaatacaaagaaacaaatatttatatcagcacaagtattatacaaacaactaaacatttatgatcca 32722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 555 - 653
Target Start/End: Original strand, 34322 - 34421
Alignment:
Q  555 ttcattgagacattttatcaaacacctatagtgcaattctcaatcagcataaaanctaacaatttctaaaccct-aaactaccacattgcactctaaaca 653  Q
    ||||||||||||||||| |||||||||| ||| ||  | ||||||| | | ||| | ||||||||| ||||||| ||||||||||||| |||||||||||    
T  34322 ttcattgagacattttaacaaacacctagagtccatatttcaatcaacttcaaatcaaacaatttcaaaaccctaaaactaccacatttcactctaaaca 34421  T

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Target: scaffold1212 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold1212
Description:

Target: scaffold1212; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 610 - 684
Target Start/End: Original strand, 1404 - 1481
Alignment:
Q  610 ctaacaatttctaaaccctaaactaccacattgcactcta---aacatctaaactacattttttaagttaattcatca 684  Q
    |||||||||| |||||||||||||||||||||| ||||||   ||||||||||| ||| ||  |||||||||||||||    
T  1404 ctaacaatttgtaaaccctaaactaccacattgtactctaaacaacatctaaacaacaattcataagttaattcatca 1481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 556 - 680
Target Start/End: Original strand, 9805 - 9933
Alignment:
Q  556 tcattgagacattttatcaaacacctatagtgcaattctcaatcagc-ataaaanctaacaatttctaaaccctaaactaccacattgcactcta---aa 651  Q
    |||||||||||||||| | ||||| ||  |||||||| |||| || | ||  || ||||||||||||||||||||||||||||||||| || |||   ||    
T  9805 tcattgagacattttaccgaacacgtagtgtgcaattttcaaacaactatgtaatctaacaatttctaaaccctaaactaccacattgtaccctaaccaa 9904  T
Q  652 catctaaactacattttttaagttaattc 680  Q
    ||||||||| ||| ||  |||||||||||    
T  9905 catctaaacaacaattcctaagttaattc 9933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0408 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 610 - 653
Target Start/End: Complemental strand, 5359 - 5316
Alignment:
Q  610 ctaacaatttctaaaccctaaactaccacattgcactctaaaca 653  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||    
T  5359 ctaacaatttcaaaaccctaaactaccacattgtactctaaaca 5316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 232 - 306
Target Start/End: Original strand, 180731 - 180805
Alignment:
Q  232 tcatccctacaaatacaaggagacaaatttatattagcacaagtatcatacaaacaaatatacatttatgatcca 306  Q
    |||||||| |||| | || || |||||||||||| |||| |||||| |||||||||| |||||||||| ||||||    
T  180731 tcatccctgcaaacagaaagaaacaaatttatatcagcagaagtattatacaaacaattatacatttacgatcca 180805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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