View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1607-INSERTION-13 (Length: 486)
Name: NF1607-INSERTION-13
Description: NF1607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1607-INSERTION-13 |
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Alignment Details
Target: chr8 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 91 - 465
Target Start/End: Complemental strand, 24998857 - 24998480
Alignment:
| Q |
91 |
tcatcttctccatcaccacgtcgttatctaaagccagaagctcttgcaaaac---tgagggactccaagaaaatcaaagccagcaggaaactgcaaaatc |
187 |
Q |
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| T |
24998857 |
tcatcctctccatccccacgtcgttatctaaagccaggagcccttgcaaaaaaattgagggactccaagaaaatcaaagccaacaggaagctgcaaaatc |
24998758 |
T |
|
| Q |
188 |
aactcaacttattagaactctcaccaacaacaccaatttcacctccttccttttctccatcaccacagaatttggataatgtcgttccttgcttcgatcc |
287 |
Q |
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|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
24998757 |
aaatcaacttattagaactctcaacaacaacaccaatttcacctccttccttttctccatcaccacagaatttggataatgtcgtaccttgcttcgatcc |
24998658 |
T |
|
| Q |
288 |
cacctttaaccgccctcgctgccttgctaggaagaaactcttcgcggttacacccgtttttactgaacacacagacacttacctgttttaattagattta |
387 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24998657 |
cacctttaaccgccctcgctgccttgctaggaagaaactcttcgcggttacacccgtttttactgaacacacagacacttacctgttttaattagattta |
24998558 |
T |
|
| Q |
388 |
catgttatagtatcataattcatttatctcttttgtatttttattattcaaagtgattatcgattcatcatatataca |
465 |
Q |
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| T |
24998557 |
catgttatagtatcataattcatttatctcttttgtatttttattattcaaagtgattatcgattcatcatctataca |
24998480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 57 - 365
Target Start/End: Original strand, 25002670 - 25002975
Alignment:
| Q |
57 |
agccatgacaatgaaaggaagccctaaacctaattcatcttctccatcaccacgtcgttatctaaagccagaagctcttgcaaaactgagggactccaag |
156 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |
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| T |
25002670 |
agccatgacaatgaaaggaagccctaaacctaattcatcttctccatcaccacgtcgttatctcaagccaggagctcttgcaaaactgagggactccaag |
25002769 |
T |
|
| Q |
157 |
aaaatcaaagccagcaggaaactgcaaaatcaactcaacttattagaactctcaccaacaacaccaatttcacctccttccttttctccatcaccacaga |
256 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||| ||||| | | |||||| || || || ||| ||||||| ||| ||||| |
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| T |
25002770 |
aaaatcaaagccagcaggaaactgcaaaatcaaatcaacttattagatctctctcaactctcaccaactt---cttctccctcttctccaccacaacaga |
25002866 |
T |
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| Q |
257 |
atttggataatgtcgttccttgcttcgatcccacctttaaccgccctcgctgccttgctaggaagaaactcttcgcggttacacccgtttttactgaaca |
356 |
Q |
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|||||||||| || ||||| |||||| | || ||| ||||||||||||| ||||| ||||| |||||||| ||||| |||||||| |||||||||||||| |
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| T |
25002867 |
atttggataacgttgttccatgcttcaacccaaccattaaccgccctcgatgcctcgctagaaagaaacttttcgctgttacacctgtttttactgaaca |
25002966 |
T |
|
| Q |
357 |
cacagacac |
365 |
Q |
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||||||||| |
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| T |
25002967 |
cacagacac |
25002975 |
T |
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