View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1607-INSERTION-14 (Length: 782)

Name: NF1607-INSERTION-14
Description: NF1607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1607-INSERTION-14
NF1607-INSERTION-14
[»] chr4 (1 HSPs)
chr4 (8-782)||(44261838-44262613)
[»] chr6 (50 HSPs)
chr6 (301-764)||(24934665-24935128)
chr6 (308-782)||(30135104-30135580)
chr6 (325-764)||(24738757-24739196)
chr6 (288-762)||(29949422-29949896)
chr6 (327-764)||(21160189-21160626)
chr6 (288-782)||(29953219-29953714)
chr6 (512-782)||(24942179-24942450)
chr6 (315-730)||(30053460-30053875)
chr6 (325-730)||(30149560-30149964)
chr6 (8-287)||(24936374-24936653)
chr6 (316-782)||(24898056-24898523)
chr6 (316-729)||(15726742-15727154)
chr6 (480-684)||(30577485-30577688)
chr6 (333-730)||(15714562-15714958)
chr6 (581-727)||(29366238-29366384)
chr6 (394-489)||(24942447-24942542)
chr6 (316-514)||(30029596-30029794)
chr6 (566-727)||(29348401-29348561)
chr6 (582-714)||(29898126-29898254)
chr6 (615-714)||(30118592-30118691)
chr6 (615-714)||(29905688-29905787)
chr6 (597-727)||(29835251-29835381)
chr6 (597-727)||(29866685-29866815)
chr6 (597-727)||(29887333-29887463)
chr6 (597-727)||(29894589-29894719)
chr6 (603-727)||(29073799-29073923)
chr6 (603-727)||(29078563-29078687)
chr6 (603-727)||(29106372-29106496)
chr6 (599-727)||(29929309-29929437)
chr6 (612-727)||(28926395-28926510)
chr6 (612-727)||(29357827-29357942)
chr6 (614-727)||(24730891-24731004)
chr6 (572-735)||(16701964-16702126)
chr6 (603-725)||(30126894-30127016)
chr6 (615-727)||(24890097-24890209)
chr6 (603-727)||(29211232-29211356)
chr6 (603-714)||(24263591-24263702)
chr6 (660-727)||(30060058-30060125)
chr6 (567-729)||(29889764-29889925)
chr6 (662-727)||(30061893-30061958)
chr6 (334-497)||(24271536-24271698)
chr6 (624-727)||(29116297-29116400)
chr6 (672-714)||(24271855-24271897)
chr6 (606-724)||(29882474-29882592)
chr6 (606-724)||(29909630-29909748)
chr6 (325-500)||(16701717-16701892)
chr6 (402-497)||(29894818-29894913)
chr6 (435-497)||(29085283-29085345)
chr6 (657-727)||(29099379-29099449)
chr6 (316-369)||(24263305-24263358)
[»] scaffold0110 (1 HSPs)
scaffold0110 (325-730)||(43431-43835)
[»] chr8 (1 HSPs)
chr8 (325-715)||(9782587-9782983)
[»] chr3 (5 HSPs)
chr3 (378-730)||(24226853-24227204)
chr3 (325-504)||(11991570-11991749)
chr3 (672-727)||(24219143-24219198)
chr3 (400-729)||(16351084-16351412)
chr3 (401-730)||(33997973-33998301)
[»] chr1 (2 HSPs)
chr1 (333-709)||(17251367-17251742)
chr1 (320-513)||(19490499-19490692)
[»] chr7 (1 HSPs)
chr7 (386-730)||(8651298-8651644)
[»] scaffold0572 (1 HSPs)
scaffold0572 (533-739)||(3257-3462)
[»] scaffold0019 (1 HSPs)
scaffold0019 (325-729)||(125685-126088)
[»] scaffold2177 (1 HSPs)
scaffold2177 (325-496)||(171-341)
[»] scaffold0429 (1 HSPs)
scaffold0429 (533-728)||(6231-6425)
[»] scaffold0014 (6 HSPs)
scaffold0014 (532-730)||(121249-121446)
scaffold0014 (316-448)||(121033-121165)
scaffold0014 (316-500)||(137636-137820)
scaffold0014 (590-727)||(104564-104701)
scaffold0014 (590-709)||(137428-137547)
scaffold0014 (325-504)||(140518-140697)
[»] scaffold0308 (1 HSPs)
scaffold0308 (402-640)||(9118-9355)
[»] chr2 (1 HSPs)
chr2 (335-500)||(15062448-15062613)
[»] scaffold0573 (1 HSPs)
scaffold0573 (612-727)||(4173-4288)
[»] scaffold0086 (1 HSPs)
scaffold0086 (316-371)||(30871-30926)
[»] scaffold0652 (1 HSPs)
scaffold0652 (532-761)||(1064-1293)
[»] scaffold0177 (1 HSPs)
scaffold0177 (532-741)||(27375-27583)
[»] scaffold0237 (1 HSPs)
scaffold0237 (660-727)||(22379-22446)
[»] scaffold0051 (2 HSPs)
scaffold0051 (316-452)||(42871-43007)
scaffold0051 (533-649)||(43088-43203)
[»] scaffold0654 (1 HSPs)
scaffold0654 (672-735)||(1128-1191)


Alignment Details
Target: chr4 (Bit Score: 713; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 713; E-Value: 0
Query Start/End: Original strand, 8 - 782
Target Start/End: Original strand, 44261838 - 44262613
Alignment:
Q  8 gtaatcactccaacatatgaagagcgcggatctagttaatttttgcacatgctacaaatttaggttctatccttttcattttgaatctatacgattaaga 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44261838 gtaatcactccaacatatgaagagcgcggatctagttaatttttgcacatgctacaaatttaggttctatccttttcattttgaatctatacgattaaga 44261937  T
Q  108 taaacatcacatataagatgacaaatgagaggaattgaagcaagccttaaatgcatttgttacaacagatcatcatgtatatctaattgacataggacat 207  Q
    ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  44261938 taaacattacatataagaggacaaatgagaggaattgaagcaagccttaaatgcatttgttacaacaaatcatcatgtatatctaattgacataggacat 44262037  T
Q  208 taagatctttgaaactggaaaaatagaagcatataatcattaacttgatatcattagtcattagattattacaccatgtgacttgaacacatgtcacctg 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44262038 taagatctttgaaactggaaaaatagaagcatataatcattaacttgatatcattagtcattagattattacaccatgtgacttgaacacatgtcacctg 44262137  T
Q  308 gttttacattacaatatacctctaacaatcatttcatgaagaagtttcaccgccttatcattcttgccgttttcaaacaaagcacgaataagagtttcgt 407  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  44262138 gttttacattacaatatacctctaacaatcatttcacgaagaagtttcaccgtcttatcattcttgccattttcaaacaaagcacgaataagagtttcgt 44262237  T
Q  408 aagttacagcattaggggtgcaaccgttgtcttccatttttgacactaaggacaatgcgtcatcaaacaagccctctttacaaagcccattgaccatcac 507  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44262238 aagttacagcattaggggtgcaactgttgtcttccatttttgacactaaggacaatgcgtcatcaaacaagccctctttacaaagcccattgaccatcac 44262337  T
Q  508 actatacattttaacatctaaatgatagcccttaataagaagattctgataaaccacttgtgcatccttaagtccttccatttttgcatagtccgtcaac 607  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  44262338 actgtacattttaacatctaaatgatagcccttaataagaagattctgataaaccacttgtgcatccttaagt-cttccatttttgcatagtccgtcaac 44262436  T
Q  608 aagtatagtgtaagtatacatatttggctgaattccttggtctttgatcttcgttaataatgtgattgccttgtcaacctgatggtttttgcacaaagca 707  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44262437 aagtatagtgtaagtatacatatttggctgaattccttggtctttgatcttcgttaataatgtgattgccttgtcaacctgatggtttttgcacaaagca 44262536  T
Q  708 tccaataaggaattgtaagtgatgacatcagca-gttggcctatattatgcatctcatctat-agatccccaacatc 782  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||| ||||||    
T  44262537 tccaataaggaattgtaagtgataacatcagcaggttggcctatattatgcatctcatctataagatcccaaacatc 44262613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 349; Significance: 0; HSPs: 50)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 301 - 764
Target Start/End: Complemental strand, 24935128 - 24934665
Alignment:
Q  301 tcacctggttttacattacaatatacctctaacaatcatttcatgaagaagtttcaccgccttatcattcttgccgttttcaaacaaagcacgaataaga 400  Q
    ||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||  |||| || ||||||||||| | ||||    
T  24935128 tcacctggttttacattacaatatacctctagcaatcatttcacgtagaagtttcaccgccttatcattcttatcgttctcgaacaaagcacggacaaga 24935029  T
Q  401 gtttcgtaagttacagcattaggggtgcaaccgttgtcttccatttttgacactaaggacaatgcgtcatcaaacaagccctctttacaaagcccattga 500  Q
    ||||| ||||||||||||| |||  |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  24935028 gtttcataagttacagcatcaggtatgcaaccgttgtcttccatttttgacactaaggacagtgcttcatcaaacaagccctctttacaaagcccattga 24934929  T
Q  501 ccatcacactatacattttaacatctaaatgatagcccttaataagaagattctgataaaccacttgtgcatccttaagtccttccatttttgcatagtc 600  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||    
T  24934928 ccatcacattatacattttaacatctaaatgatagcccttaataagaagatcctgataaaccgcttgtgcatccttaagt-cttccatttttgcatagtc 24934830  T
Q  601 cgtcaacaagtatagtgtaagtatacatatttggctgaattccttggtctttgatcttcgttaataatgtgattgccttgtcaacctgatggtttttgca 700  Q
    | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  24934829 catcaacaagtatagtgtaagtataaatatttggctgaattccttggtctttgatcttcgttattaatgtgattgccttgtcaacctgatggtttttgca 24934730  T
Q  701 caaagcatccaataaggaattgtaagtgatgacatcagca-gttggcctatattatgcatctcat 764  Q
    ||||||||||||||||||| |||||||||| ||||| ||| |||||||| |||||||||||||||    
T  24934729 caaagcatccaataaggaactgtaagtgatcacatcggcaggttggcctctattatgcatctcat 24934665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 308 - 782
Target Start/End: Complemental strand, 30135580 - 30135104
Alignment:
Q  308 gttttacattacaatatacctctaacaatcatttcatgaagaagtttcaccgccttatcattcttgccgttttcaaacaaagcacgaataagagtttcgt 407  Q
    |||||| |||||| || ||||||| |||||||||||  |||||||||||| ||||||||||||||  | ||||  || |||||||| |||| | ||||||    
T  30135580 gttttagattacagtagacctctatcaatcatttcacaaagaagtttcactgccttatcattcttaacatttttgaataaagcacggataacaatttcgt 30135481  T
Q  408 aagttacagcattaggggtgcaaccgttgtcttccatttttgacactaaggacaatgcgtcatcaaacaagccctctttacaaagcccattgaccatcac 507  Q
    |||||||| ||| ||||||||||  ||||| |||||||||||||| || ||||||||| ||||||||||| ||||||||||| |||| ||| ||||||||    
T  30135480 aagttacaacatcaggggtgcaattgttgtgttccatttttgacaatatggacaatgcttcatcaaacaaaccctctttacagagccaattaaccatcac 30135381  T
Q  508 actatacattttaacatctaaatgatagcccttaataagaagattctgataaaccacttgtgcatccttaagtccttccatttttgcatagtccgtcaac 607  Q
    | |||||||| |||||||||||||||| |||||||| |||||||  ||||||||| ||| |||||||||||||  ||||||||||||||| ||| |||||    
T  30135380 attatacattataacatctaaatgatatcccttaatcagaagatcttgataaaccgcttttgcatccttaagt-tttccatttttgcatattccatcaac 30135282  T
Q  608 aagtatagtgtaagtatacatatttggctgaattccttggtctttgatcttcgttaataatgtgattgccttgtc-aacctgatggtttttgcacaaagc 706  Q
    |||||  ||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  30135281 aagtaatgtgtatgtatacaaatttggctgaataccttggtctttgatcttcgttaataatgtgattgccttgtcaaacctgatggtttttgcacaaagc 30135182  T
Q  707 atccaataaggaattgtaagtgatgacatcagca-gttggcctatattatgcatctcatctat-agatccccaacatc 782  Q
    ||||||||| |||||||||||||| |||| |||| |||| ||| | | ||||||||||||||| ||||||| ||||||    
T  30135181 atccaataaagaattgtaagtgatcacattagcaggttgacctctttcatgcatctcatctataagatcccaaacatc 30135104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 325 - 764
Target Start/End: Original strand, 24738757 - 24739196
Alignment:
Q  325 acctctaacaatcatttcatgaagaagtttcaccgccttatcattcttgccgttttcaaacaaagcacgaataagagtttcgtaagttacagcattaggg 424  Q
    ||||||| ||||||||||| ||||||||| ||| |||||||||||| || ||||||||||||||||||| |||||| ||||| ||||||||| |||||||    
T  24738757 acctctagcaatcatttcacgaagaagttccactgccttatcattcatgtcgttttcaaacaaagcacggataagaatttcgaaagttacaggattaggg 24738856  T
Q  425 gtgcaaccgttgtcttccatttttgacactaaggacaatgcgtcatcaaacaagccctctttacaaagcccattgaccatcacactatacattttaacat 524  Q
    |||||||| ||||||||||||||||||| |||||||||||| | ||| ||||||| ||||| |||||| ||||| | ||  ||| |||||||  | || |    
T  24738857 gtgcaaccattgtcttccatttttgacagtaaggacaatgctttatcgaacaagctctcttaacaaaggccattaatcagaacagtatacatcctcacgt 24738956  T
Q  525 ctaaatgatagcccttaataagaagattctgataaaccacttgtgcatccttaagtccttccatttttgcatagtccgtcaacaagtatagtgtaagtat 624  Q
    ||||||||||||| ||||| | |||| ||||||||||| |||| || ||||| ||| ||||||||||||||||  || ||||||||||| ||||| ||||    
T  24738957 ctaaatgatagcctttaatcaaaagaatctgataaacctcttgcgcgtccttgagt-cttccatttttgcataaaccatcaacaagtattgtgtatgtat 24739055  T
Q  625 acatatttggctgaattccttggtctttgatcttcgttaataatgtgattgccttgtcaacctgatggtttttgcacaaagcatccaataaggaattgta 724  Q
    | ||||  ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24739056 atatatccggctgaattccttggtctttgatcttcgtaagtaatgtgattgccttgtcaacctgatggtttttgcacaaagcatccaataaggaattgta 24739155  T
Q  725 agtgatgacatcagca-gttggcctatattatgcatctcat 764  Q
    |||||| ||||||||| |||||||| |||||||||||||||    
T  24739156 agtgatcacatcagcaggttggcctctattatgcatctcat 24739196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 288 - 762
Target Start/End: Original strand, 29949422 - 29949896
Alignment:
Q  288 acttgaacacatgtcacctggttttacattacaatatacctctaacaatcatttcatgaagaagtttcaccgccttatcattcttgccgttttcaaacaa 387  Q
    |||||||  ||| |||||| ||||||||||| | || ||||||||||||||||||| |||||||||| || |||||||||||||||  |||||| |||||    
T  29949422 acttgaaagcatctcacctagttttacattatagtagacctctaacaatcatttcacgaagaagtttaacagccttatcattcttgttgttttcgaacaa 29949521  T
Q  388 agcacgaataagagtttcgtaagttacagcattaggggtgcaaccgttgtcttccatttttgacactaaggacaatgcgtcatcaaacaagccctcttta 487  Q
    ||||| ||||||||||| ||||||||  ||||| ||||||||||| ||||||||||||||||||| |||||||||||| || ||||| || || ||||||    
T  29949522 agcacaaataagagtttggtaagttatcgcatttggggtgcaaccattgtcttccatttttgacagtaaggacaatgcctcgtcaaataaaccttcttta 29949621  T
Q  488 caaagcccattgaccatcacactatacattttaacatctaaatgatagcccttaataagaagattctgataaaccacttgtgcatccttaagtccttcca 587  Q
    |||| | |||| ||||||||| |||||||   ||||| |||| |||| |||||| | |||||||  ||||||| | |||||||||||| |||| ||||||    
T  29949622 caaaactcattaaccatcacattatacatcgaaacatttaaaggataacccttagtcagaagatcatgataaatctcttgtgcatcctcaagt-cttcca 29949720  T
Q  588 tttttgcatagtccgtcaacaagtatagtgtaagtatacatatttggctgaattccttggtctttgatcttcgttaataatgtgattgccttgtcaacct 687  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||  |||||||||  || |||||||||||||    
T  29949721 tttttgcatagtccatcaacaagtatagtgtatgtatacatatttggctgaattccttggtcttttatcttttttaataatgcaatcgccttgtcaacct 29949820  T
Q  688 gatggtttttgcacaaagcatccaataaggaattgtaagtgatgacatcagca-gttggcctatattatgcatctc 762  Q
    ||||||||||||| |||||||| ||||| |||||||||||||| |||| |||| |||||||||||| |||||||||    
T  29949821 gatggtttttgcataaagcatctaataaagaattgtaagtgatcacattagcaggttggcctatatcatgcatctc 29949896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 327 - 764
Target Start/End: Original strand, 21160189 - 21160626
Alignment:
Q  327 ctctaacaatcatttcatgaagaagtttcaccgccttatcattcttgccgttttcaaacaaagcacgaataagagtttcgtaagttacagcattaggggt 426  Q
    ||||||||||||||| | ||||||||| ||| |||||||||||| || ||||||||||||||||||| |||||| ||||| ||||||||| |||||||||    
T  21160189 ctctaacaatcattttacgaagaagttccactgccttatcattcatgtcgttttcaaacaaagcacggataagaatttcgaaagttacaggattaggggt 21160288  T
Q  427 gcaaccgttgtcttccatttttgacactaaggacaatgcgtcatcaaacaagccctctttacaaagcccattgaccatcacactatacattttaacatct 526  Q
    |||||| ||||||| ||||||||||| |||||| ||||| | ||| ||||||| |||||||||||| ||||| | ||| ||| |||||||  | || |||    
T  21160289 gcaaccattgtctttcatttttgacagtaaggataatgctttatcgaacaagctctctttacaaaggccattaatcataacagtatacatcctcacgtct 21160388  T
Q  527 aaatgatagcccttaataagaagattctgataaaccacttgtgcatccttaagtccttccatttttgcatagtccgtcaacaagtatagtgtaagtatac 626  Q
    ||||||||||| ||||| | |||| ||||||| ||| |||| || ||||||||| ||||||||||||||||  || ||||||||||| ||||| |||||     
T  21160389 aaatgatagcctttaatcaaaagaatctgatagacctcttgcgcgtccttaagt-cttccatttttgcataaaccatcaacaagtattgtgtatgtatat 21160487  T
Q  627 atatttggctgaattccttggtctttgatcttcgttaataatgtgattgccttgtcaacctgatggtttttgcacaaagcatccaataaggaattgtaag 726  Q
    ||||  |||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  21160488 atatacggctgaattccttggtcttttatcttcgtaaataatgtgattgccatgtcaacctgatggtttttgcacaaagcatccaataaggaattgtaag 21160587  T
Q  727 tgatgacatcagca-gttggcctatattatgcatctcat 764  Q
    |||| ||||||||| |||||||| |||||||||||||||    
T  21160588 tgatcacatcagcaggttggcctctattatgcatctcat 21160626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 288 - 782
Target Start/End: Original strand, 29953219 - 29953714
Alignment:
Q  288 acttgaacacatgtcacctggttttacattacaatatacctctaacaatcatttcatgaagaagtttcaccgccttatcattcttgccgttttcaaacaa 387  Q
    |||||||  ||| |||||| ||||||||||| | || ||||||||||||||||||| |||||||||| || |||||||||||||||  |||||| |||||    
T  29953219 acttgaaagcatctcacctagttttacattatagtagacctctaacaatcatttcacgaagaagtttaacagccttatcattcttgttgttttcgaacaa 29953318  T
Q  388 agcacgaataagagtttcgtaagttacagcattaggggtgcaaccgttgtcttccatttttgacactaaggacaatgcgtcatcaaacaagccctcttta 487  Q
    ||||| ||||||||||| ||||||||  ||||  ||||||||||| ||||||||||||||||||| |||||||||||| || ||||| || || ||||||    
T  29953319 agcacaaataagagtttggtaagttatcgcatctggggtgcaaccattgtcttccatttttgacagtaaggacaatgcctcgtcaaataaaccttcttta 29953418  T
Q  488 caaagcccattgaccatcacactatacattttaacatctaaatgatagcccttaataagaagattctgataaaccacttgtgcatccttaagtccttcca 587  Q
    |||| | |||| ||||||||| |||||||   ||||| |||| |||| |||||| | |||||||  ||||||| | || ||||||||  |||| ||||||    
T  29953419 caaaactcattaaccatcacattatacatcgaaacatttaaaggataacccttagtcagaagatcatgataaatctctcgtgcatccgcaagt-cttcca 29953517  T
Q  588 tttttgcatagtccgtcaacaagtatagtgtaagtatacatatttggctgaattccttggtctttgatcttcgttaataatgtgattgccttgtcaacct 687  Q
    ||||||||||| || ||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||| |||||||||  || |||||||||||||    
T  29953518 tttttgcatagcccatcaacaagtatagtgtatgtatacatatttggctgaatcccttggtctttcatcttctttaataatgcaatcgccttgtcaacct 29953617  T
Q  688 gatggtttttgcacaaagcatccaataaggaattgtaagtgatgaca-tcagcagttggcctatattatgcatctcatctat-agatccccaacatc 782  Q
    |||||||||||||||||||||||||||| |||||||||||||| ||| | | | |||| | | ||||||||||||||||||| ||||||| ||||||    
T  29953618 gatggtttttgcacaaagcatccaataaagaattgtaagtgatcacattaaccggttgacatctattatgcatctcatctataagatcccaaacatc 29953714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 512 - 782
Target Start/End: Complemental strand, 24942450 - 24942179
Alignment:
Q  512 tacattttaacatctaaatgatagcccttaataagaagattctgataaaccacttgtgcatccttaagtccttccatttttgcatagtccgtcaacaagt 611  Q
    ||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||| ||||| || ||||||||||||||||||| |||||||||    
T  24942450 tacattttaacatctaaatgatagcccttaaaaagaagatactgataaaccgcttgtgcatgcttaaatc-ttccatttttgcatagtccatcaacaagt 24942352  T
Q  612 atagtgtaagtatacatatttggctgaattccttggtctttgatcttcgttaataatgtgattgccttgtcaacctgatggtttttgcacaaagcatcca 711  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  24942351 atagtgtaagtatacatatttggctgaattccttggtctttgatcttcattaataatgtaattgccttgtcaacctgatggtttttgaacaaagcatcca 24942252  T
Q  712 ataaggaattgtaagtgatgacatcagca-gttggcctatattatgcatctcatctat-agatccccaacatc 782  Q
    ||||||||||||| ||||| ||||||||| |||||||| ||||||||||||||||||| ||||||| ||||||    
T  24942251 ataaggaattgtacgtgatcacatcagcaggttggcctctattatgcatctcatctataagatcccaaacatc 24942179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 315 - 730
Target Start/End: Complemental strand, 30053875 - 30053460
Alignment:
Q  315 attacaatatacctctaacaatcatttcatgaagaagtttcaccgccttatcattcttgccgttttcaaacaaagcacgaataagagtttcgtaagttac 414  Q
    |||||| || || |||||||||||||||| |||||||| ||| |||||||||||||||| ||||||| |||||||||| ||||||||||||||| |||||    
T  30053875 attacagtagacgtctaacaatcatttcacgaagaagtgtcagcgccttatcattcttgtcgttttcgaacaaagcacaaataagagtttcgtatgttac 30053776  T
Q  415 agcattaggggtgcaaccgttgtcttccatttttgacactaaggacaatgcgtcatcaaacaagccctctttacaaagccca-ttgaccatcacactata 513  Q
    ||||| |||  ||||||||||||||||||||| ||| | |||||||||||| ||||| || || |||||||||||||||||| || | ||||||| ||||    
T  30053775 agcatcaggcatgcaaccgttgtcttccatttgtgagagtaaggacaatgcttcatcgaaaaaaccctctttacaaagcccatttaatcatcacattata 30053676  T
Q  514 cattttaacatctaaatgatagcccttaataagaagattctgataaaccacttgtgcatccttaagtccttccatttttgcatagtccgtcaacaagtat 613  Q
    |||| ||| || |||  | |||||||||   ||||||| |||||||| |  |||||||||||||||| |||||||||||||||||||| ||||||||| |    
T  30053675 cattctaatatttaatgggtagcccttacatagaagatcctgataaatcctttgtgcatccttaagt-cttccatttttgcatagtccatcaacaagtgt 30053577  T
Q  614 agtgtaagtatacatatttggctgaattccttggtctttgatcttcgttaataatgtgattgccttgtcaacctgatggtttttgcacaaagcatccaat 713  Q
     ||||| ||| |||||| |||||||||||||| |||||| ||||||||||| || |  ||||||||||||||||||||||||||||||||  |||  |||    
T  30053576 tgtgtatgtaaacatatctggctgaattccttcgtctttcatcttcgttaacaacgcaattgccttgtcaacctgatggtttttgcacaatccatataat 30053477  T
Q  714 aaggaattgtaagtgat 730  Q
    || ||||||||||||||    
T  30053476 aaagaattgtaagtgat 30053460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 325 - 730
Target Start/End: Complemental strand, 30149964 - 30149560
Alignment:
Q  325 acctctaacaatcatttcatgaagaagtttcaccgccttatcattcttgccgttttcaaacaaagcacgaataagagtttcgtaagttacagcattaggg 424  Q
    ||||||| ||||||||||| ||| || ||||||||||||||||||  || || ||||||||||||||||||||| | |||| ||||||||| ||| |||     
T  30149964 acctctagcaatcatttcacgaataaatttcaccgccttatcatttctgtcgctttcaaacaaagcacgaataataatttcataagttacaccatcagga 30149865  T
Q  425 gtgcaaccgttgtcttccatttttgacactaaggacaatgcgtcatcaaacaagccctctttacaaagcccattgaccatcacactatacattttaacat 524  Q
    |||||||||||||||| ||||||||| | |||||||||||| ||||| || || || ||||||||||||||||| | ||||||| ||||||| ||| |||    
T  30149864 gtgcaaccgttgtctttcatttttgagagtaaggacaatgcttcatcgaaaaacccttctttacaaagcccattaatcatcacagtatacatcttagcat 30149765  T
Q  525 ctaaatgatagcccttaataagaagattctgataaaccacttgtgcatccttaagtccttccatttttgcatagtccgtcaacaagtatagtgtaagtat 624  Q
    ||||||||||||| |||||   ||||| | |||||||  |||||||||||| |||| ||||| ||||||||||||||  ||| |||||||||||| | ||    
T  30149764 ctaaatgatagcctttaatcgtaagatcccgataaacttcttgtgcatcctcaagt-cttccgtttttgcatagtccaacaaaaagtatagtgtatgaat 30149666  T
Q  625 acatatttggctgaattccttggtctttgatcttcgttaataatgtgattgccttgtcaacctgatggtttttgcacaaagcatccaataaggaattgta 724  Q
    ||||| ||||||||||||| ||||||||||||||  |||||||||  |||||| |||||||||||||||||||||||||  |||| ||||| ||||||||    
T  30149665 acatacttggctgaattccctggtctttgatcttttttaataatgcaattgccctgtcaacctgatggtttttgcacaatccatcaaataaagaattgta 30149566  T
Q  725 agtgat 730  Q
    ||||||    
T  30149565 agtgat 30149560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 165; E-Value: 8e-88
Query Start/End: Original strand, 8 - 287
Target Start/End: Complemental strand, 24936653 - 24936374
Alignment:
Q  8 gtaatcactccaacatatgaagagcgcggatctagttaatttttgcacatgctacaaatttaggttctatccttttcattttgaatctatacgattaaga 107  Q
    |||||||||||||| ||||||||||| |||||| |||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||| || |||||    
T  24936653 gtaatcactccaacgtatgaagagcgtggatctggttaatttttacacatgctacaaatataggttctatctttttcattttgaatctatatgactaaga 24936554  T
Q  108 taaacatcacatataagatgacaaatgagaggaattgaagcaagccttaaatgcatttgttacaacagatcatcatgtatatctaattgacataggacat 207  Q
    |||| || | ||| | || |||||| ||||| |||||||  |||| ||| |||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  24936553 taaatataatatacaggacgacaaaagagag-aattgaaataagctttagatgcatttattacaacaaatcatcatgtatatctaattgacataggacat 24936455  T
Q  208 taagatctttgaaactggaaaaatagaagcatataatcattaacttgatatcattagtcattaga-ttattacaccatgtg 287  Q
    ||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  24936454 taagatcttcgaaactggaaaaattgaagcttataatcattaacttgatatcattagtcattagatttattacacaatgtg 24936374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 316 - 782
Target Start/End: Complemental strand, 24898523 - 24898056
Alignment:
Q  316 ttacaatatacctctaacaatcatttcatgaagaagtttcaccgccttatcattcttgccgttttcaaacaaagcacgaataagagtttcgtaagttaca 415  Q
    ||||| || |||||||  || ||||||| | || |||||||| |||||||||||| || ||||||  ||||||||||| |||||||||| ||||||||||    
T  24898523 ttacagtagacctctagaaagcatttcacggaggagtttcacggccttatcattcatgtcgtttttgaacaaagcacggataagagttttgtaagttaca 24898424  T
Q  416 gcattaggggtgcaaccgttgtcttccatttttgacactaaggacaatgcgtcatcaaacaagccctctttacaaagcccattgaccatcacactataca 515  Q
     ||| ||| |||||||| |||||||||||||  |||| ||   ||||||| || ||||||||||||||||||||||||||||| | ||| ||| ||| ||    
T  24898423 acatcaggtgtgcaaccattgtcttccatttcggacagtacaaacaatgcttcgtcaaacaagccctctttacaaagcccattaatcatgacattatgca 24898324  T
Q  516 ttttaacatctaaatgatagcccttaataagaagattctgataaaccacttgtgcatccttaagtccttccatttttgcatagtccgtcaacaagtatag 615  Q
    |   | |||  ||||||||||||||||  | ||||| | |||||||| |||||||||||||||||| ||||||||||||||||||| |||||||| || |    
T  24898323 tgcaagcattaaaatgatagcccttaaccataagatcccgataaacctcttgtgcatccttaagtc-ttccatttttgcatagtccatcaacaagcattg 24898225  T
Q  616 tgtaagtatacatatttggctgaattccttggtctttgatcttcgttaataatgtgattgccttgtcaacctgatggtttttgcacaaagcatccaataa 715  Q
    |||| ||  |||||| ||| | ||||||  |||||||||||||| | ||||| |  |||||||||||||| |||||||||||  |||| |||||||||||    
T  24898224 tgtatgtgaacatatctggttcaattccccggtctttgatcttcttcaataacgcaattgccttgtcaacttgatggtttttaaacaatgcatccaataa 24898125  T
Q  716 ggaattgtaagtgatgacatcagc-agttggcctatattatgcatctcatctat-agatccccaacatc 782  Q
     ||  ||||| |||| |  |||||  |||| ||| ||| |||||| |||||||| ||||||| ||||||    
T  24898124 cgaggtgtaaatgattatgtcagcttgttgacctctatcatgcatatcatctataagatcccaaacatc 24898056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 316 - 729
Target Start/End: Original strand, 15726742 - 15727154
Alignment:
Q  316 ttacaatatacctctaacaatcatttcatgaagaagtttcaccgccttatcattcttgccgttttcaaacaaagcacgaataagagtttcgtaagttaca 415  Q
    |||||||| ||||||| ||||||||||| | ||||||| | | |||||||||||||   | |||| ||| | ||||||  |||  | ||| |||||||||    
T  15726742 ttacaatagacctctagcaatcatttcacgtagaagttgctctgccttatcattctcatcatttttaaagagagcacggttaattggttcataagttaca 15726841  T
Q  416 gcattaggggtgcaaccgttgtcttccatttttgacactaaggacaatgcgtcatcaaacaagccctctttacaaagcccattgaccatcacactataca 515  Q
    ||||  ||  ||||||| |||||||||||||||||||  | || |   || |||||||| ||||||| |  |||||| ||||||| ||| | ||||||      
T  15726842 gcatctggaatgcaaccattgtcttccatttttgacagcagggtcgtagcttcatcaaataagccctttgaacaaagaccattgatcataatactatatg 15726941  T
Q  516 ttttaacatctaaatgatagcccttaataagaagattctgataaaccacttgtgcatccttaagtccttccatttttgcatagtccgtcaacaagtatag 615  Q
    |   ||||| ||||| |||||| ||||| | |||||  ||| ||| |||||||||||||||||||| |||| | |||||||||||| || | |||||||     
T  15726942 tgcaaacatttaaattatagcctttaatcaaaagatcttgaaaaatcacttgtgcatccttaagtc-ttccttgtttgcatagtccatcgataagtatac 15727040  T
Q  616 tgtaagtatacatatttggctgaattccttggtctttgatcttcgttaataatgtgattgccttgtcaacctgatggtttttgcacaaagcatccaataa 715  Q
    | || |||||||||| ||  ||||| || ||||||||||| ||| | | ||||   |||||||||||||| |||||||||||||| |||||||| | |||    
T  15727041 tatatgtatacatatctgattgaatgccctggtctttgattttcttgactaatacaattgccttgtcaacgtgatggtttttgcataaagcatctattaa 15727140  T
Q  716 ggaattgtaagtga 729  Q
     |||||||||||||    
T  15727141 cgaattgtaagtga 15727154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 480 - 684
Target Start/End: Original strand, 30577485 - 30577688
Alignment:
Q  480 cctctttacaaagcccattgaccatcacactatacattttaacatctaaatgatagcccttaataagaagattctgataaaccacttgtgcatccttaag 579  Q
    ||||| ||||||||||||| | ||||||| | |||| | ||||||||||| ||||||||||||| |||||||  ||| ||| | ||||||||||||||||    
T  30577485 cctctctacaaagcccattaatcatcacagtgtacagtctaacatctaaacgatagcccttaatcagaagatcatgaaaaatctcttgtgcatccttaag 30577584  T
Q  580 tccttccatttttgcatagtccgtcaacaagtatagtgtaagtatacatatttggctgaattccttggtctttgatcttcgttaataatgtgattgcctt 679  Q
    | |||||||||||||| ||||| |||||||||||| |||| |||  ||||||||||| || ||||| |||||||||||| || |||| | | |||||| |    
T  30577585 t-cttccatttttgcacagtccatcaacaagtatattgtatgtaaccatatttggctcaaatcctttgtctttgatctttgtaaatattctaattgccgt 30577683  T
Q  680 gtcaa 684  Q
    |||||    
T  30577684 gtcaa 30577688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 333 - 730
Target Start/End: Original strand, 15714562 - 15714958
Alignment:
Q  333 caatcatttcatgaagaagtttcaccgccttatcattcttgccgttttcaaacaaagcacgaataagagtttcgtaagttacagcattaggggtgcaacc 432  Q
    ||||||||||| | ||||||||| | |||||||||||||   | |||| ||| | |||||| ||||  ||||| |||||||||||||  ||  |||||||    
T  15714562 caatcatttcacgcagaagtttctctgccttatcattctcatcatttttaaagagagcacggataattgtttcataagttacagcatctggaatgcaacc 15714661  T
Q  433 gttgtcttccatttttgacactaaggacaatgcgtcatcaaacaagccctctttacaaagcccattgaccatcacactatacattttaacatctaaatga 532  Q
     |||||||||||||||||||  | || || ||| |||||||| |||||||||  |||||| ||||||| ||| | ||| ||  |   ||||  ||||| |    
T  15714662 attgtcttccatttttgacagcagggtcactgcttcatcaaataagccctctaaacaaagaccattgatcataatactctatgtccaaacagttaaatta 15714761  T
Q  533 tagcccttaataagaagattctgataaaccacttgtgcatccttaagtccttccatttttgcatagtccgtcaacaagtatagtgtaagtatacatattt 632  Q
    |||||  |||| | |||||  | | ||| ||||||||| | | ||||| ||||| | |||||||||||| || | ||| ||  |||| ||   |||||||    
T  15714762 tagcctataatcaaaagatgtttaaaaatcacttgtgcgttcctaagt-cttccttctttgcatagtccatcgataaggatgttgtatgtggtcatattt 15714860  T
Q  633 ggctgaattccttggtctttgatcttcgttaataatgtgattgccttgtcaacctgatggtttttgcacaaagcatccaataaggaattgtaagtgat 730  Q
    || | |||||||||||||||||||||| | |  || |  |||||||||||||| ||||| |||||||| ||||||| ||||||||||||||| |||||    
T  15714861 ggttcaattccttggtctttgatcttcttgaccaaagcaattgccttgtcaacgtgatgatttttgcataaagcatgcaataaggaattgtatgtgat 15714958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 581 - 727
Target Start/End: Original strand, 29366238 - 29366384
Alignment:
Q  581 ccttccatttttgcatagtccgtcaacaagtatagtgtaagtatacatatttggctgaattccttggtctttgatcttcgttaataatgtgattgccttg 680  Q
    ||||||||||||||||||||| ||||| | | | ||||| ||| | |||| ||| ||||||||||  ||||| ||||||||||| || |  |||||||||    
T  29366238 ccttccatttttgcatagtccatcaactaatgttgtgtatgtacaaatatctggttgaattccttcatctttcatcttcgttaacaacgcaattgccttg 29366337  T
Q  681 tcaacctgatggtttttgcacaaagcatccaataaggaattgtaagt 727  Q
    |||||||||||||||||||| |||||||||||||  |||||||||||    
T  29366338 tcaacctgatggtttttgcataaagcatccaatatagaattgtaagt 29366384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 394 - 489
Target Start/End: Complemental strand, 24942542 - 24942447
Alignment:
Q  394 aataagagtttcgtaagttacagcattaggggtgcaaccgttgtcttccatttttgacactaaggacaatgcgtcatcaaacaagccctctttaca 489  Q
    |||||||| |||  ||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  24942542 aataagagcttcaaaagttacatgattaggggtgcaaccattgtcttccatttttgacactaaggacaatgcttcatcaaacaagccctttttaca 24942447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 316 - 514
Target Start/End: Complemental strand, 30029794 - 30029596
Alignment:
Q  316 ttacaatatacctctaacaatcatttcatgaagaagtttcaccgccttatcattcttgccgttttcaaacaaagcacgaataagagtttcgtaagttaca 415  Q
    |||||||| ||||||| |||||||||||  |||||||||| | ||| ||||  ||||||| ||| |||| | ||||| |||||   |||||||||||| |    
T  30029794 ttacaatagacctctagcaatcatttcacaaagaagtttctctgccatatctatcttgccttttccaaatagagcacaaataattatttcgtaagttata 30029695  T
Q  416 gcattaggggtgcaaccgttgtcttccatttttgacactaaggacaatgcgtcatcaaacaagccctctttacaaagcccattgaccatcacactatac 514  Q
    |||| ||| | |||||| || |||||||||||||| |  |||| |||| | |||||||||||||||||||||||||| ||| ||| ||| ||| |||||    
T  30029694 gcatcaggagcgcaaccattctcttccatttttgaaagcaaggtcaatacttcatcaaacaagccctctttacaaaggccactgatcataacagtatac 30029596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 566 - 727
Target Start/End: Original strand, 29348401 - 29348561
Alignment:
Q  566 tgtgcatccttaagtccttccatttttgcatagtccgtcaacaagtatagtgtaagtatacatatttggctgaattccttggtctttgatcttcgttaat 665  Q
    ||||||||||| |||| |||||  ||| || | ||| |||| ||| |||||||| || ||||||| ||| ||||||||||  ||||| |||||||||||     
T  29348401 tgtgcatcctttagtc-ttccacctttacacaatccatcaataagaatagtgtatgtgtacatatctggttgaattccttcatctttcatcttcgttaac 29348499  T
Q  666 aatgtgattgccttgtcaacctgatggtttttgcacaaagcatccaataaggaattgtaagt 727  Q
    || |  ||||||||||||||||||||||||||||| |||||||||||||  |||||||||||    
T  29348500 aacgcaattgccttgtcaacctgatggtttttgcataaagcatccaatatagaattgtaagt 29348561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 582 - 714
Target Start/End: Complemental strand, 29898254 - 29898126
Alignment:
Q  582 cttccatttttgcatagtccgtcaacaagtatagtgtaagtatacatatttggctgaattccttggtctttgatcttcgttaataatgtgattgccttgt 681  Q
    ||||||||||| |||||||| ||||||||| | ||||| ||| | |||| |||||||||||    |||||| ||||| ||||| || |||||||||||||    
T  29898254 cttccatttttccatagtccatcaacaagtgttgtgtatgtacaaatatctggctgaattc----gtctttaatctttgttaacaacgtgattgccttgt 29898159  T
Q  682 caacctgatggtttttgcacaaagcatccaata 714  Q
    ||||||||||||||||||| ||||||| |||||    
T  29898158 caacctgatggtttttgcataaagcattcaata 29898126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 615 - 714
Target Start/End: Original strand, 30118592 - 30118691
Alignment:
Q  615 gtgtaagtatacatatttggctgaattccttggtctttgatcttcgttaataatgtgattgccttgtcaacctgatggtttttgcacaaagcatccaata 714  Q
    ||||| || ||||||||||| ||||||||  ||||||| |  || ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  30118592 gtgtatgtgtacatatttggttgaattcccaggtctttcaattttgttaataatgtgattgccttgtcaacctgatagtttttgcataaagcatccaata 30118691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 615 - 714
Target Start/End: Complemental strand, 29905787 - 29905688
Alignment:
Q  615 gtgtaagtatacatatttggctgaattccttggtctttgatcttcgttaataatgtgattgccttgtcaacctgatggtttttgcacaaagcatccaata 714  Q
    ||||| || ||||||||||| ||||| ||  ||||||| |  || ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  29905787 gtgtatgtgtacatatttggttgaatacccaggtctttcaattttgttaataatgtgattgccttgtcaacctgatagtttttgcataaagcatccaata 29905688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 597 - 727
Target Start/End: Complemental strand, 29835381 - 29835251
Alignment:
Q  597 agtccgtcaacaagtatagtgtaagtatacatatttggctgaattccttggtctttgatcttcgttaataatgtgattgccttgtcaacctgatggtttt 696  Q
    ||||| |||| ||| |||||||| || |||||||||||  |||| || |||||||| |  || |||||||| |  |||||||||||||||||||||||||    
T  29835381 agtccatcaataagaatagtgtatgtgtacatatttggtcgaataccctggtctttcaattttgttaataacgcaattgccttgtcaacctgatggtttt 29835282  T
Q  697 tgcacaaagcatccaataaggaattgtaagt 727  Q
    |||| |||||||||||||  ||| |||||||    
T  29835281 tgcataaagcatccaatatagaactgtaagt 29835251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 597 - 727
Target Start/End: Complemental strand, 29866815 - 29866685
Alignment:
Q  597 agtccgtcaacaagtatagtgtaagtatacatatttggctgaattccttggtctttgatcttcgttaataatgtgattgccttgtcaacctgatggtttt 696  Q
    ||||| |||| ||| |||||||| || |||||||||||  |||| || |||||||| |  || |||||||| |  |||||||||||||||||||||||||    
T  29866815 agtccatcaataagaatagtgtatgtgtacatatttggtcgaataccctggtctttcaaatttgttaataacgcaattgccttgtcaacctgatggtttt 29866716  T
Q  697 tgcacaaagcatccaataaggaattgtaagt 727  Q
    |||| |||||||||||||  ||| |||||||    
T  29866715 tgcataaagcatccaatatagaactgtaagt 29866685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 597 - 727
Target Start/End: Complemental strand, 29887463 - 29887333
Alignment:
Q  597 agtccgtcaacaagtatagtgtaagtatacatatttggctgaattccttggtctttgatcttcgttaataatgtgattgccttgtcaacctgatggtttt 696  Q
    ||||| |||| ||| |||||||| || |||||||||||  |||| || |||||||| |  || |||||||| |  |||||||||||||||||||||||||    
T  29887463 agtccatcaataagaatagtgtatgtgtacatatttggtcgaataccctggtctttcaaatttgttaataacgcaattgccttgtcaacctgatggtttt 29887364  T
Q  697 tgcacaaagcatccaataaggaattgtaagt 727  Q
    |||| |||||||| ||||| ||| |||||||    
T  29887363 tgcataaagcatctaataaagaactgtaagt 29887333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 597 - 727
Target Start/End: Complemental strand, 29894719 - 29894589
Alignment:
Q  597 agtccgtcaacaagtatagtgtaagtatacatatttggctgaattccttggtctttgatcttcgttaataatgtgattgccttgtcaacctgatggtttt 696  Q
    ||||| |||| ||| |||||||| || |||||||||||  |||| || |||||||| |  || |||||||| |  |||||||||||||||||||||||||    
T  29894719 agtccatcaataagaatagtgtatgtgtacatatttggtcgaataccctggtctttcaattttgttaataacgcaattgccttgtcaacctgatggtttt 29894620  T
Q  697 tgcacaaagcatccaataaggaattgtaagt 727  Q
    |||| |||||||||||||  ||| |||||||    
T  29894619 tgcataaagcatccaatatagaactgtaagt 29894589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 603 - 727
Target Start/End: Complemental strand, 29073923 - 29073799
Alignment:
Q  603 tcaacaagtatagtgtaagtatacatatttggctgaattccttggtctttgatcttcgttaataatgtgattgccttgtcaacctgatggtttttgcaca 702  Q
    |||| ||| |||||||| || | |||| ||||  |||| ||||||||||| |  || ||||||||||  ||||||||||||||||||||||||||||| |    
T  29073923 tcaataagaatagtgtatgtgtgcatagttggtcgaataccttggtctttcaattttgttaataatgcaattgccttgtcaacctgatggtttttgcata 29073824  T
Q  703 aagcatccaataaggaattgtaagt 727  Q
    ||||||||||||  ||| |||||||    
T  29073823 aagcatccaatatagaactgtaagt 29073799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 603 - 727
Target Start/End: Complemental strand, 29078687 - 29078563
Alignment:
Q  603 tcaacaagtatagtgtaagtatacatatttggctgaattccttggtctttgatcttcgttaataatgtgattgccttgtcaacctgatggtttttgcaca 702  Q
    |||| ||| |||||||| || | |||| ||||  |||| ||||||||||| |  || ||||||||||  ||||||||||||||||||||||||||||| |    
T  29078687 tcaataagaatagtgtatgtgtgcatagttggtcgaataccttggtctttcaattttgttaataatgcaattgccttgtcaacctgatggtttttgcata 29078588  T
Q  703 aagcatccaataaggaattgtaagt 727  Q
    ||||||||||||  ||| |||||||    
T  29078587 aagcatccaatatagaactgtaagt 29078563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 603 - 727
Target Start/End: Complemental strand, 29106496 - 29106372
Alignment:
Q  603 tcaacaagtatagtgtaagtatacatatttggctgaattccttggtctttgatcttcgttaataatgtgattgccttgtcaacctgatggtttttgcaca 702  Q
    |||| ||| |||||||| || | |||| ||||  |||| ||||||||||| |  || ||||||||||  ||||||||||||||||||||||||||||| |    
T  29106496 tcaataagaatagtgtatgtgtgcatagttggtcgaataccttggtctttcaattttgttaataatgcaattgccttgtcaacctgatggtttttgcata 29106397  T
Q  703 aagcatccaataaggaattgtaagt 727  Q
    ||||||||||||  ||| |||||||    
T  29106396 aagcatccaatatagaactgtaagt 29106372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 599 - 727
Target Start/End: Complemental strand, 29929437 - 29929309
Alignment:
Q  599 tccgtcaacaagtatagtgtaagtatacatatttggctgaattccttggtctttgatcttcgttaataatgtgattgccttgtcaacctgatggtttttg 698  Q
    |||||||| ||| |||||||| || |||| | |||| ||||| || ||||||||||  |||||||| ||||  ||||| ||||||||||||||| |||||    
T  29929437 tccgtcaataagaatagtgtatgtgtacacacttggttgaataccctggtctttgaatttcgttaacaatgcaattgctttgtcaacctgatgggttttg 29929338  T
Q  699 cacaaagcatccaataaggaattgtaagt 727  Q
    || |||||||| ||||  |||||||||||    
T  29929337 cataaagcatctaatatagaattgtaagt 29929309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 612 - 727
Target Start/End: Original strand, 28926395 - 28926510
Alignment:
Q  612 atagtgtaagtatacatatttggctgaattccttggtctttgatcttcgttaataatgtgattgccttgtcaacctgatggtttttgcacaaagcatcca 711  Q
    |||||||| || ||||||||||| ||||  || |||||||| |  || ||||||||||  |||||||||||||| |||||||||||||| ||||||||||    
T  28926395 atagtgtatgtgtacatatttggttgaagaccctggtctttcaattttgttaataatgcaattgccttgtcaacatgatggtttttgcataaagcatcca 28926494  T
Q  712 ataaggaattgtaagt 727  Q
    |||  ||| |||||||    
T  28926495 atagagaactgtaagt 28926510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 612 - 727
Target Start/End: Original strand, 29357827 - 29357942
Alignment:
Q  612 atagtgtaagtatacatatttggctgaattccttggtctttgatcttcgttaataatgtgattgccttgtcaacctgatggtttttgcacaaagcatcca 711  Q
    |||||||| || ||||||||||| ||||| || |||| ||| ||||  |||||||| |  ||||| ||||||||||||||||||||||| ||||||||||    
T  29357827 atagtgtatgtgtacatatttggttgaataccctggtttttcatctgtgttaataacgcaattgcattgtcaacctgatggtttttgcataaagcatcca 29357926  T
Q  712 ataaggaattgtaagt 727  Q
    |||  ||| |||||||    
T  29357927 atatagaactgtaagt 29357942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 614 - 727
Target Start/End: Complemental strand, 24731004 - 24730891
Alignment:
Q  614 agtgtaagtatacatatttggctgaattccttggtctttgatcttcgttaataatgtgattgccttgtcaacctgatggtttttgcacaaagcatccaat 713  Q
    |||||| || ||||||| |||  |||| || |||||||| |  || ||||||||||  |||||||||||||| |||||||||||||| ||||||||||||    
T  24731004 agtgtatgtgtacatatctggtcgaataccctggtctttcaaatttgttaataatgcaattgccttgtcaacatgatggtttttgcataaagcatccaat 24730905  T
Q  714 aaggaattgtaagt 727  Q
    |  |||||||||||    
T  24730904 atagaattgtaagt 24730891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 572 - 735
Target Start/End: Original strand, 16701964 - 16702126
Alignment:
Q  572 tccttaagtccttccatttttgcatagtccgtcaacaagtatagtgtaagtatacatatttggctgaattccttggtctttgatcttcgttaataatgtg 671  Q
    |||||||||| |||| | |||||||||||| ||||||||| || | || || | ||||| ||| ||||| ||||||||||| |  ||  | |  ||||      
T  16701964 tccttaagtc-ttccttgtttgcatagtccatcaacaagtgtattatatgtgtgcatatctggttgaatgccttggtctttaaaattgttgaccaatgca 16702062  T
Q  672 attgccttgtcaacctgatggtttttgcacaaagcatccaataaggaattgtaagtgatgacat 735  Q
    |||||||||||||| ||||||||||| || |||||||  |||||||||||||||||||| ||||    
T  16702063 attgccttgtcaacatgatggtttttacataaagcatgtaataaggaattgtaagtgattacat 16702126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 603 - 725
Target Start/End: Original strand, 30126894 - 30127016
Alignment:
Q  603 tcaacaagtatagtgtaagtatacatatttggctgaattccttggtctttgatcttcgttaataatgtgattgccttgtcaacctgatggtttttgcaca 702  Q
    |||| ||| |||||||| || |||| | |||| ||||| || |||| ||| |  |||||||| ||||  ||||| ||||||||||||||||||||||| |    
T  30126894 tcaataagaatagtgtatgtgtacacacttggttgaataccctggtttttaaatttcgttaacaatgcaattgctttgtcaacctgatggtttttgcata 30126993  T
Q  703 aagcatccaataaggaattgtaa 725  Q
    ||||||||||||  |||||||||    
T  30126994 aagcatccaatatagaattgtaa 30127016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 615 - 727
Target Start/End: Original strand, 24890097 - 24890209
Alignment:
Q  615 gtgtaagtatacatatttggctgaattccttggtctttgatcttcgttaataatgtgattgccttgtcaacctgatggtttttgcacaaagcatccaata 714  Q
    ||||| || ||||||| |||  |||| || |||||||| |  || ||||||||||  |||||||||||||| |||||||||||||| |||||||||||||    
T  24890097 gtgtatgtgtacatatctggtcgaataccctggtctttcaaatttgttaataatgcaattgccttgtcaacatgatggtttttgcataaagcatccaata 24890196  T
Q  715 aggaattgtaagt 727  Q
      ||| |||||||    
T  24890197 tagaactgtaagt 24890209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 603 - 727
Target Start/End: Original strand, 29211232 - 29211356
Alignment:
Q  603 tcaacaagtatagtgtaagtatacatatttggctgaattccttggtctttgatcttcgttaataatgtgattgccttgtcaacctgatggtttttgcaca 702  Q
    |||| ||| |||||||| || | |||||||||  |||| ||||||||||| |  || ||||||||||  | ||||||||||||| ||||| ||||||| |    
T  29211232 tcaataagaatagtgtatgtgtgcatatttggtcgaataccttggtctttcaattttgttaataatgcaactgccttgtcaacccgatgggttttgcata 29211331  T
Q  703 aagcatccaataaggaattgtaagt 727  Q
    ||||||||||||  ||| |||||||    
T  29211332 aagcatccaatatagaactgtaagt 29211356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 603 - 714
Target Start/End: Original strand, 24263591 - 24263702
Alignment:
Q  603 tcaacaagtatagtgtaagtatacatatttggctgaattccttggtctttgatcttcgttaataatgtgattgccttgtcaacctgatggtttttgcaca 702  Q
    |||| ||| |||||||| || |||||||||||  |||| || |||||||| |  ||  |||||||||  ||||||||||||||| ||||||||||||| |    
T  24263591 tcaataagaatagtgtatgtgtacatatttggtcgaataccctggtctttcaattttattaataatgcaattgccttgtcaaccagatggtttttgcata 24263690  T
Q  703 aagcatccaata 714  Q
    | ||||||||||    
T  24263691 aggcatccaata 24263702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 660 - 727
Target Start/End: Original strand, 30060058 - 30060125
Alignment:
Q  660 gttaataatgtgattgccttgtcaacctgatggtttttgcacaaagcatccaataaggaattgtaagt 727  Q
    ||||||||||  ||||||||||||||||||||||||||||| |||||||  ||||  |||||||||||    
T  30060058 gttaataatgcaattgccttgtcaacctgatggtttttgcataaagcatttaatatagaattgtaagt 30060125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 567 - 729
Target Start/End: Complemental strand, 29889925 - 29889764
Alignment:
Q  567 gtgcatccttaagtccttccatttttgcatagtccgtcaacaagtatagtgtaagtatacatatttggctgaattccttggtctttgatcttcgttaata 666  Q
    |||||||||| |||| |||||  |||||| | ||| |||| ||| |||||||| || |||| |||||| ||||| |  |||||||| |  |||||| | |    
T  29889925 gtgcatcctttagtc-ttccacctttgcacaatccatcaataagaatagtgtatgtttacacatttggttgaatactctggtctttaaatttcgttgaca 29889827  T
Q  667 atgtgattgccttgtcaacctgatggtttttgcacaaagcatccaataaggaattgtaagtga 729  Q
    |||  ||||  ||||||||||||||| ||||||| |||||||| ||||  |||||||||||||    
T  29889826 atgcaattgttttgtcaacctgatgggttttgcataaagcatctaatatagaattgtaagtga 29889764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 662 - 727
Target Start/End: Original strand, 30061893 - 30061958
Alignment:
Q  662 taataatgtgattgccttgtcaacctgatggtttttgcacaaagcatccaataaggaattgtaagt 727  Q
    |||||||||||||||||||||||  ||||||  |||||| |||||||||||||  |||||||||||    
T  30061893 taataatgtgattgccttgtcaagatgatggcgtttgcataaagcatccaatatagaattgtaagt 30061958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 334 - 497
Target Start/End: Original strand, 24271536 - 24271698
Alignment:
Q  334 aatcatttcatgaagaagtttcaccgccttatcattcttgccgttttcaaacaaagcacgaataagagtttcgtaagttacagcattaggggtgcaaccg 433  Q
    |||||||||| ||||||||| | ||||||||||||| |   |||| ||||||| || ||| || |   |||| |||||||||||||| ||  ||||||      
T  24271536 aatcatttcacgaagaagtt-ctccgccttatcattttcatcgttatcaaacagagaacggatgattatttcataagttacagcatttggaatgcaacaa 24271634  T
Q  434 ttgtcttccatttttgacactaaggacaatgcgtcatcaaacaagccctctttacaaagcccat 497  Q
    ||||||| |||||||||||  || | || ||| ||||||||||||||||  ||||||| |||||    
T  24271635 ttgtctttcatttttgacaacaaagtcattgcttcatcaaacaagcccttgttacaaaacccat 24271698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 624 - 727
Target Start/End: Complemental strand, 29116400 - 29116297
Alignment:
Q  624 tacatatttggctgaattccttggtctttgatcttcgttaataatgtgattgccttgtcaacctgatggtttttgcacaaagcatccaataaggaattgt 723  Q
    ||||||||||| ||||| || | |||||| |  |||||||| ||||  ||||| |||||||| |||||| ||||||| |||||||| ||||  |||||||    
T  29116400 tacatatttggttgaatacccttgtctttcaatttcgttaacaatgcaattgctttgtcaacttgatggattttgcataaagcatctaatatagaattgt 29116301  T
Q  724 aagt 727  Q
    ||||    
T  29116300 aagt 29116297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 672 - 714
Target Start/End: Original strand, 24271855 - 24271897
Alignment:
Q  672 attgccttgtcaacctgatggtttttgcacaaagcatccaata 714  Q
    ||||||||||||||||||||||||||||| ||| |||||||||    
T  24271855 attgccttgtcaacctgatggtttttgcataaatcatccaata 24271897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 606 - 724
Target Start/End: Complemental strand, 29882592 - 29882474
Alignment:
Q  606 acaagtatagtgtaagtatacatatttggctgaattccttggtctttgatcttcgttaataatgtgattgccttgtcaacctgatggtttttgcacaaag 705  Q
    ||||| |||||||| || | ||||| |||  |||| |||||| |||| |  || ||||||||||  ||||| |||||||| ||||| |||||||| ||||    
T  29882592 acaagaatagtgtatgtgttcatatctggtcgaataccttggcctttcaattttgttaataatgcaattgctttgtcaacatgatgttttttgcataaag 29882493  T
Q  706 catccaataaggaattgta 724  Q
    |||||||||  ||||||||    
T  29882492 catccaatatagaattgta 29882474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 606 - 724
Target Start/End: Complemental strand, 29909748 - 29909630
Alignment:
Q  606 acaagtatagtgtaagtatacatatttggctgaattccttggtctttgatcttcgttaataatgtgattgccttgtcaacctgatggtttttgcacaaag 705  Q
    ||||| |||||||| || | ||||| |||  |||| |||||| |||| |  || ||||||||||  ||||| |||||||| ||||| |||||||| ||||    
T  29909748 acaagaatagtgtatgtgttcatatctggtcgaataccttggcctttcaattttgttaataatgcaattgctttgtcaacatgatgttttttgcataaag 29909649  T
Q  706 catccaataaggaattgta 724  Q
    |||||||||  ||||||||    
T  29909648 catccaatatagaattgta 29909630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 325 - 500
Target Start/End: Original strand, 16701717 - 16701892
Alignment:
Q  325 acctctaacaatcatttcatgaagaagtttcaccgccttatcattcttgccgttttcaaacaaagcacgaataagagtttcgtaagttacagcattaggg 424  Q
    |||||||||||||| |||| | | ||||||| | || ||||||||||   | |||||||| | |||  ||||||  ||||  ||||||||| ||| |||     
T  16701717 acctctaacaatcaattcacgtacaagtttctctgctttatcattctcatccttttcaaatagagcgtgaataatggtttgataagttacaacatcaggt 16701816  T
Q  425 gtgcaaccgttgtcttccatttttgacactaaggacaatgcgtcatcaaacaagccctctttacaaagcccattga 500  Q
     |||| || |||||||||||||||||||  |||| |   || ||||||| ||||||||||  |||||| |||||||    
T  16701817 atgcatccattgtcttccatttttgacagcaaggtctcagcttcatcaagcaagccctctaaacaaagaccattga 16701892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 402 - 497
Target Start/End: Complemental strand, 29894913 - 29894818
Alignment:
Q  402 tttcgtaagttacagcattaggggtgcaaccgttgtcttccatttttgacactaaggacaatgcgtcatcaaacaagccctctttacaaagcccat 497  Q
    |||| |||||||||||||  ||  ||||||  ||||||| |||||||||||  || | |||||| ||||||||||||||||  ||||||| |||||    
T  29894913 tttcataagttacagcatctggaatgcaactattgtctttcatttttgacaacaaagtcaatgcttcatcaaacaagcccttgttacaaaacccat 29894818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 435 - 497
Target Start/End: Complemental strand, 29085345 - 29085283
Alignment:
Q  435 tgtcttccatttttgacactaaggacaatgcgtcatcaaacaagccctctttacaaagcccat 497  Q
    |||||| |||||||||||  || |||||||| ||||||||||||||||  ||||||| |||||    
T  29085345 tgtctttcatttttgacaacaaagacaatgcttcatcaaacaagcccttcttacaaaacccat 29085283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 657 - 727
Target Start/End: Complemental strand, 29099449 - 29099379
Alignment:
Q  657 ttcgttaataatgtgattgccttgtcaacctgatggtttttgcacaaagcatccaataaggaattgtaagt 727  Q
    |||||||| ||||  ||||| |||||||| |||||| ||||||| |||||||| ||||  |||||||||||    
T  29099449 ttcgttaacaatgcaattgctttgtcaacttgatgggttttgcataaagcatctaatatagaattgtaagt 29099379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 316 - 369
Target Start/End: Original strand, 24263305 - 24263358
Alignment:
Q  316 ttacaatatacctctaacaatcatttcatgaagaagtttcaccgccttatcatt 369  Q
    |||||||| ||||||   |||||||||| ||||||||||| |||||||||||||    
T  24263305 ttacaatagacctcttgtaatcatttcacgaagaagtttctccgccttatcatt 24263358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 325 - 730
Target Start/End: Original strand, 43431 - 43835
Alignment:
Q  325 acctctaacaatcatttcatgaagaagtttcaccgccttatcattcttgccgttttcaaacaaagcacgaataagagtttcgtaagttacagcattaggg 424  Q
    ||||||| ||||||||||| |||  ||||||||||||||||||||  ||  ||||||||||||||||||||||| | |||| ||||||||| ||| |||     
T  43431 acctctagcaatcatttcacgaatcagtttcaccgccttatcatttctgttgttttcaaacaaagcacgaataataatttcataagttacaccatcagga 43530  T
Q  425 gtgcaaccgttgtcttccatttttgacactaaggacaatgcgtcatcaaacaagccctctttacaaagcccattgaccatcacactatacattttaacat 524  Q
    |||||||||||||||||||||||||| | |||||||||||| |||||||| || || ||||||||||||||||| | ||||||| |||| ||  || |||    
T  43531 gtgcaaccgttgtcttccatttttgagagtaaggacaatgcttcatcaaaaaacccttctttacaaagcccattaatcatcacagtatatatcctagcat 43630  T
Q  525 ctaaatgatagcccttaataagaagattctgataaaccacttgtgcatccttaagtccttccatttttgcatagtccgtcaacaagtatagtgtaagtat 624  Q
    |||||||||||   ||| | ||||||  |||||||||| ||||||||||| |||||  ||||||||||||| ||||| ||||||||||||||||| ||||    
T  43631 ctaaatgataggtgttattcagaagaacctgataaacctcttgtgcatccctaagt-tttccatttttgcacagtccatcaacaagtatagtgtatgtat 43729  T
Q  625 acatatttggctgaattccttggtctttgatcttcgttaataatgtgattgccttgtcaacctgatggtttttgcacaaagcatccaataaggaattgta 724  Q
    | |||| | |||||||||||||||  |||||||||||||| || |||||||||||||||||||||||||||||||||||  |||| ||||| ||| ||||    
T  43730 agatatctagctgaattccttggttcttgatcttcgttaacaaagtgattgccttgtcaacctgatggtttttgcacaatccatctaataaagaactgta 43829  T
Q  725 agtgat 730  Q
    ||||||    
T  43830 agtgat 43835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 172; Significance: 5e-92; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 172; E-Value: 5e-92
Query Start/End: Original strand, 325 - 715
Target Start/End: Complemental strand, 9782983 - 9782587
Alignment:
Q  325 acctctaacaatcatttcatgaagaagtttcaccgccttatcattcttgccgttttcaaacaaagcacgaataagagtttcgtaagttacagcattaggg 424  Q
    ||||||| |||||||||||  |||||||||||||||||||||||| | | || |||||||||||||||||||| ||||||| |||||||| |||| |||     
T  9782983 acctctagcaatcatttcacaaagaagtttcaccgccttatcattttggtcgctttcaaacaaagcacgaatacgagtttcataagttactgcatcagga 9782884  T
Q  425 gtg-------caaccgttgtcttccatttttgacactaaggacaatgcgtcatcaaacaagccctctttacaaagcccattgaccatcacactatacatt 517  Q
    |||       |||||| |||||||||||||||| | |||||||||||| ||||| || || ||||||||||| |||||||| | ||||||| |||||||     
T  9782883 gtgaggagtgcaaccgatgtcttccatttttgagagtaaggacaatgcttcatcgaaaaaaccctctttacagagcccattaatcatcacagtatacatc 9782784  T
Q  518 ttaacatctaaatgatagcccttaataagaagattctgataaaccacttgtgcatccttaagtccttccatttttgcatagtccgtcaacaagtatagtg 617  Q
     || ||||||||||||| || |||||   ||||| | ||||||||  ||||||||||||||||| ||||||||||||| ||||| |||||||||||||||    
T  9782783 ctagcatctaaatgataacctttaatcgtaagatcccgataaaccctttgtgcatccttaagtc-ttccatttttgcacagtccatcaacaagtatagtg 9782685  T
Q  618 taagtatacatatttggctgaattccttggtctttgatcttcgttaataatgtgattgccttgtcaacctgatggtttttgcacaaagcatccaataa 715  Q
    || ||| |||||| |||||||||||||| |||||| ||||| ||||| || |  ||||||||||||||||||||| ||||||||||||||||||||||    
T  9782684 tatgtacacatatctggctgaattccttcgtctttcatctttgttaacaacgcaattgccttgtcaacctgatggattttgcacaaagcatccaataa 9782587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 165; Significance: 8e-88; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 165; E-Value: 8e-88
Query Start/End: Original strand, 378 - 730
Target Start/End: Complemental strand, 24227204 - 24226853
Alignment:
Q  378 tttcaaacaaagcacgaataagagtttcgtaagttacagcattaggggtgcaaccgttgtcttccatttttgacactaaggacaatgcgtcatcaaacaa 477  Q
    |||||||||||||||||||   | |||| ||||||||| ||| ||| |||||   |||||||||||||||||| | |||||||||||| ||||| || ||    
T  24227204 tttcaaacaaagcacgaatggtaatttcataagttacaccatcaggagtgcacttgttgtcttccatttttgagagtaaggacaatgcttcatccaaaaa 24227105  T
Q  478 gccctctttacaaagcccattgaccatcacactatacattttaacatctaaatgatagcccttaataagaagattctgataaaccacttgtgcatcctta 577  Q
     || ||||||||||||||||| | ||||||| |||| ||  || ||||||| |||||||| ||| | ||||||| |||||||||| ||||||||||| ||    
T  24227104 cccttctttacaaagcccattaatcatcacagtatatatcctagcatctaactgatagcctttattcagaagatcctgataaacctcttgtgcatcccta 24227005  T
Q  578 agtccttccatttttgcatagtccgtcaacaagtatagtgtaagtatacatatttggctgaattccttggtctttgatcttcgttaataatgtgattgcc 677  Q
    |||| ||||||||||||| ||||| ||||||||||||||||| ||||| ||||||||| |||||||||| |  |||||||||||||| ||||||||||||    
T  24227004 agtc-ttccatttttgcacagtccatcaacaagtatagtgtatgtatagatatttggccgaattccttgattcttgatcttcgttaacaatgtgattgcc 24226906  T
Q  678 ttgtcaacctgatggtttttgcacaaagcatccaataaggaattgtaagtgat 730  Q
    ||||||||||||||||||||||||||  |||| ||||| ||||||||||||||    
T  24226905 ttgtcaacctgatggtttttgcacaatccatctaataaagaattgtaagtgat 24226853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 325 - 504
Target Start/End: Complemental strand, 11991749 - 11991570
Alignment:
Q  325 acctctaacaatcatttcatgaagaagtttcaccgccttatcattcttgccgttttcaaacaaagcacgaataagagtttcgtaagttacagcattaggg 424  Q
    ||||||| ||||||||||| | ||||||||| ||||||| |||||||   | || | ||| | |||  | || |||||||| ||||||||||||| |||     
T  11991749 acctctagcaatcatttcacgcagaagtttctccgccttttcattctcatctttatgaaagagagcctggatgagagtttcataagttacagcatcagga 11991650  T
Q  425 gtgcaaccgttgtcttccatttttgacactaaggacaatgcgtcatcaaacaagccctctttacaaagcccattgaccat 504  Q
     ||  ||| ||||| |||||||||||||  |||| |  ||| |||||||||||||||||||||||||| |||||||||||    
T  11991649 atgataccattgtcatccatttttgacaacaaggcctctgcttcatcaaacaagccctctttacaaagtccattgaccat 11991570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 672 - 727
Target Start/End: Original strand, 24219143 - 24219198
Alignment:
Q  672 attgccttgtcaacctgatggtttttgcacaaagcatccaataaggaattgtaagt 727  Q
    |||||||||||||| |||||||||||||| |||||||||||||| |||||||||||    
T  24219143 attgccttgtcaacatgatggtttttgcataaagcatccaataaagaattgtaagt 24219198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 400 - 729
Target Start/End: Complemental strand, 16351412 - 16351084
Alignment:
Q  400 agtttcgtaagttacagcattaggggtgcaaccgttgtcttccatttttgacactaaggacaatgcgtcatcaaacaagccctctttacaaagcccattg 499  Q
    |||||| ||||||||||||| |||  ||  ||| ||||| |||||||||||||  |||  |  ||| |||||||||||||| ||||||||||| ||||||    
T  16351412 agtttcataagttacagcatcaggaatgataccattgtcctccatttttgacaacaagacctctgcttcatcaaacaagccttctttacaaagtccattg 16351313  T
Q  500 accatcacactatacattttaacatctaaatgatagcccttaataagaagattctgataaaccacttgtgcatccttaagtccttccatttttgcatagt 599  Q
    | ||| | | ||||| |   | ||| ||  | ||| |||||||| | ||||| |||| ||||  ||||||||| ||| |||  | ||   ||||||||||    
T  16351312 atcataatattatacgtccaagcatttacgttataacccttaatcaaaagatcctgaaaaacatcttgtgcattcttgagttgt-cctcctttgcatagt 16351214  T
Q  600 ccgtcaacaagtatagtgtaagtatacatatttggctgaattccttggtctttgatcttcgttaataatgtgattgccttgtcaacctgatggtttttgc 699  Q
    || |||| ||||||| |||| ||  |||||||||| ||||| || || ||||| || ||| | | |||||  || ||||||||||| || ||||||||||    
T  16351213 ccatcaataagtatattgtatgtgcacatatttggttgaatgccatgttctttaattttcttaactaatgcaatagccttgtcaacatgttggtttttgc 16351114  T
Q  700 acaaagcatccaataaggaattgtaagtga 729  Q
    | ||| |||| |  || |||||||||||||    
T  16351113 agaaaacatctatcaaagaattgtaagtga 16351084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 401 - 730
Target Start/End: Complemental strand, 33998301 - 33997973
Alignment:
Q  401 gtttcgtaagttacagcattaggggtgcaaccgttgtcttccatttttgacactaaggacaatgcgtcatcaaacaagccctctttacaaagcccattga 500  Q
    ||||| ||| ||||||||| |||  ||||| | |||||||||||| |||| |  ||||  | ||| ||||||||||| ||||  |||||||||||||| |    
T  33998301 gtttcataacttacagcatcaggaatgcaagcattgtcttccattcttgataacaaggcaagtgcttcatcaaacaaacccttcttacaaagcccattta 33998202  T
Q  501 ccatcacactatacattttaacatctaaatgatagcccttaataagaagattctgataaaccacttgtgcatccttaagtccttccatttttgcatagtc 600  Q
     ||| ||| ||||| |   ||||  || ||||||||| | | | | ||  | |||| ||| ||| | |||||||| ||||| |||||| |||||||||||    
T  33998201 tcataacattatacgtccaaacagttatatgatagccttcagttaaaatctcctgaaaaatcacatatgcatcctcaagtc-ttccatctttgcatagtc 33998103  T
Q  601 cgtcaacaagtatagtgtaagtatacatatttggctgaattccttggtctttgatcttcgttaa-taatgtgattgccttgtcaacctgatggtttttgc 699  Q
    | ||||  ||| |||| || ||  | | |||||||||||| ||||||||||| || ||| ||||  ||||| ||||||| ||| |  ||||| |||||||    
T  33998102 catcaattagtgtagtatatgtgcaaacatttggctgaataccttggtctttaat-ttccttaaccaatgtaattgcctggtcgagatgatgatttttgc 33998004  T
Q  700 acaaagcatccaataaggaattgtaagtgat 730  Q
    | ||||||| |||||| ||||| ||||||||    
T  33998003 ataaagcatgcaataaagaattataagtgat 33997973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 101; Significance: 1e-49; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 333 - 709
Target Start/End: Complemental strand, 17251742 - 17251367
Alignment:
Q  333 caatcatttcatgaagaagtttcaccgccttatcattcttgccgttttcaaacaaagcacgaataagagtttcgtaagttacagcattaggggtgcaacc 432  Q
    ||||||||||| ||||||||||| | ||||| |||||| || | |||||||| ||||||  |||||  ||||| |||| || ||||| |||    || ||    
T  17251742 caatcatttcacgaagaagtttctcagccttgtcattcatgtctttttcaaagaaagcattaataattgtttcataagctatagcatcaggaacacagcc 17251643  T
Q  433 gttgtcttccatttttgacactaaggacaatgcgtcatcaaacaagccctctttacaaagcccattgaccatcacactatacattttaacatctaaatga 532  Q
     |||||||||||||||||||  |||| |||||| ||||||||||||| |||||||||||||||||||| ||| | ||||||  ||  |||||||| || |    
T  17251642 tttgtcttccatttttgacagcaaggtcaatgcttcatcaaacaagctctctttacaaagcccattgatcataatactatatgttacaacatctacatta 17251543  T
Q  533 tagcccttaataagaagattctgataaaccacttgtgcatccttaagtccttccatttttgcatagtccgtcaacaagtatagtgtaagtatacatattt 632  Q
    | ||| || || | ||||| |||| |||||   || |||||  ||||| || |||| |||||| ||||| |||||||||||| |||| ||||||||||||    
T  17251542 tggcctttcatcaaaagatcctgaaaaaccttctgagcatctgtaagt-ctaccatctttgcaaagtccatcaacaagtatattgtatgtatacatattt 17251444  T
Q  633 ggctgaattccttggtctttgatcttcgttaataatgtgattgccttgtcaacctgatggtttttgcacaaagcatc 709  Q
    | |||||| ||||| ||||| || ||| ||| |||||  |||||||| ||||| |||||| ||||||||||||||||    
T  17251443 gcctgaataccttgatctttaattttctttagtaatgcaattgccttatcaacttgatggcttttgcacaaagcatc 17251367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 320 - 513
Target Start/End: Complemental strand, 19490692 - 19490499
Alignment:
Q  320 aatatacctctaacaatcatttcatgaagaagtttcaccgccttatcattcttgccgttttcaaacaaagcacgaataagagtttcgtaagttacagcat 419  Q
    |||| ||||||  ||||||||||| ||||||||||  | ||||||||||||   || ||| |||| | |||||||||||   |||| ||||||| |||||    
T  19490692 aatagacctctggcaatcatttcacgaagaagtttttcagccttatcattcacaccttttccaaagagagcacgaataattatttcataagttatagcat 19490593  T
Q  420 taggggtgcaaccgttgtcttccatttttgacactaaggacaatgcgtcatcaaacaagccctctttacaaagcccattgaccatcacactata 513  Q
     |||  |||| || ||| |||||||||||||||  |||| |||||| ||||| ||||| |  ||||||||||||||||||| ||| ||| ||||    
T  19490592 caggaatgcagcctttggcttccatttttgacagcaaggtcaatgcttcatccaacaaactttctttacaaagcccattgatcataacattata 19490499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 2e-33; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 386 - 730
Target Start/End: Complemental strand, 8651644 - 8651298
Alignment:
Q  386 aaagcacgaataagagtttcgtaagttacagcattaggggtgcaaccgttgtcttccatttttgacactaaggacaatgcgtcatcaaacaagccctctt 485  Q
    |||||||||| || | ||||  |||||||| ||| |||  |||| |||||||||||||||||||| | ||||||||| || ||||  ||||||| |||||    
T  8651644 aaagcacgaacaataatttcacaagttacaccatcaggattgcacccgttgtcttccatttttgagagtaaggacaacgcttcatataacaagctctctt 8651545  T
Q  486 tacaaagcccattgaccatcacacta---tacattttaacatctaaatgatagcccttaataagaagattctgataaaccacttgtgcatccttaagtcc 582  Q
    ||||||||||| | | ||||| | ||   |||||  |||| || ||| ||||||| |||||   ||||||| |||||||  |||| |  || | |||||     
T  8651544 tacaaagcccagtaatcatcatagtactgtacatcctaacttcaaaacgatagcctttaatcgtaagattcggataaacttcttgcgtgtcttgaagtc- 8651446  T
Q  583 ttccatttttgcatagtccgtcaacaagtatagtgtaagtatacatatttggctgaattccttggtctttgatcttcgttaataatgtgattgccttgtc 682  Q
    ||||||||||||||||||| ||||||||||  |||||  |  |||||| ||| | |||||  ||||||||||||||| | |||||||  |||||| |||     
T  8651445 ttccatttttgcatagtccatcaacaagtagtgtgtatatgaacatatatggttcaattctatggtctttgatcttcttcaataatgcaattgccatgta 8651346  T
Q  683 aacctgatggtttttgcacaaagcatccaataaggaattgtaagtgat 730  Q
    ||||| |||||||||| |||| ||||| ||||| ||| ||||||||||    
T  8651345 aaccttatggtttttgaacaatgcatcaaataaagaagtgtaagtgat 8651298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0572 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: scaffold0572
Description:

Target: scaffold0572; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 533 - 739
Target Start/End: Complemental strand, 3462 - 3257
Alignment:
Q  533 tagcccttaataagaagattctgataaaccacttgtgcatccttaagtccttccatttttgcatagtccgtcaacaagtatagtgtaagtatacatattt 632  Q
    ||||| ||||| | ||||| |||| ||| |||||||||||||||||| |||||| | |||||||||||| || | ||||||| |||| || ||||||| |    
T  3462 tagcctttaatcaaaagatcctgaaaaatcacttgtgcatccttaag-ccttccttgtttgcatagtccatcgataagtatattgtatgtgtacatatct 3364  T
Q  633 ggctgaattccttggtctttgatcttcgttaataatgtgattgccttgtcaacctgatggtttttgcacaaagcatccaataaggaattgtaagtgatga 732  Q
     | ||||| ||||||||||| || ||| | | |||||  || ||||||||||| |||||||||||||| |||||||| | ||| |||||||||||||| |    
T  3363 agttgaatgccttggtctttaattttcttgactaatgcaatagccttgtcaacatgatggtttttgcataaagcatctattaatgaattgtaagtgatta 3264  T
Q  733 catcagc 739  Q
     ||||||    
T  3263 tatcagc 3257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 65; Significance: 4e-28; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 325 - 729
Target Start/End: Original strand, 125685 - 126088
Alignment:
Q  325 acctctaacaatcatttcatgaagaagtttcaccgccttatcattcttgccgttttcaaacaaagcacgaataagagtttcgtaagttacagcattaggg 424  Q
    ||||||| ||||||||||| ||||||||||| ||||||| |||||||   | || | ||| ||||| || || | |||||| ||||||||||||| |||     
T  125685 acctctagcaatcatttcacgaagaagtttctccgccttttcattctcatctttatgaaagaaagcccggatgatagtttcataagttacagcatcagga 125784  T
Q  425 gtgcaaccgttgtcttccatttttgacactaaggacaatgcgtcatcaaacaagccctctttacaaagcccattgaccatcacactatacattttaacat 524  Q
     |    || |||||||||||||||||||  |||  |   || |||||||| || ||| |||||||||| ||||||| ||| | | ||||| ||| |||||    
T  125785 attatgccattgtcttccatttttgacagcaagacctccgcttcatcaaataaacccactttacaaagtccattgatcataatattatacgtttgaacat 125884  T
Q  525 ctaaatgatagcccttaataagaagattctgataaaccacttgtgcatccttaagtccttccatttttgcatagtccgtcaacaagtatagtgtaagtat 624  Q
    ||| |  ||| ||||| || | |||||  ||| ||||  || ||||||  | ||||| | ||   |||||||||||| |||| ||||||| |||| ||      
T  125885 ctagactataacccttgatcaaaagatcttgaaaaacatctcgtgcattatgaagtcgt-cctcctttgcatagtccatcaataagtatattgtatgtgc 125983  T
Q  625 acatatttggctgaattccttggtctttgatcttcgttaataatgtgattgccttgtcaacctgatggtttttgcacaaagcatccaataaggaattgta 724  Q
    |||||| ||| ||||| ||||| |||||||| ||| | | |||||  || |||||||||| ||||||||||||||| |||||||| | ||||||||||||    
T  125984 acatatctggttgaatgccttgatctttgattttcttaactaatgcaatagccttgtcaatctgatggtttttgcataaagcatctattaaggaattgta 126083  T
Q  725 agtga 729  Q
    |||||    
T  126084 agtga 126088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2177 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: scaffold2177
Description:

Target: scaffold2177; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 325 - 496
Target Start/End: Complemental strand, 341 - 171
Alignment:
Q  325 acctctaacaatcatttcatgaagaagtttcaccgccttatcattcttgccgttttcaaacaaagcacgaataagagtttcgtaagttacagcattaggg 424  Q
    ||||||| ||||||||||||||||||  ||| | |||||||||||||||| |||||  |||||||||||||||| |||||| ||||||||| ||| | |     
T  341 acctctatcaatcatttcatgaagaatcttctctgccttatcattcttgcggtttttgaacaaagcacgaataatagtttcataagttacaacatcatga 242  T
Q  425 gtgcaaccgttgtcttccatttttgacactaaggacaatgcgtcatcaaacaagccctctttacaaagccca 496  Q
    ||  |||| || ||||||||||   ||| |||| ||||||| ||||||||||| |||||| |||||||||||    
T  241 gtcaaaccattttcttccatttgcaaca-taagtacaatgcttcatcaaacaaaccctctctacaaagccca 171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0429 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: scaffold0429
Description:

Target: scaffold0429; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 533 - 728
Target Start/End: Complemental strand, 6425 - 6231
Alignment:
Q  533 tagcccttaataagaagattctgataaaccacttgtgcatccttaagtccttccatttttgcatagtccgtcaacaagtatagtgtaagtatacatattt 632  Q
    ||||| ||||| | ||||| |||| ||| |||||||||||||||||| |||||| | |||||||||||| || | ||||||| |||| || |||||||||    
T  6425 tagcctttaatcaaaagatcctgaaaaatcacttgtgcatccttaag-ccttccttgtttgcatagtccatcgataagtatattgtatgtgtacatattt 6327  T
Q  633 ggctgaattccttggtctttgatcttcgttaataatgtgattgccttgtcaacctgatggtttttgcacaaagcatccaataaggaattgtaagtg 728  Q
     | ||||| ||||||||||| || ||| | | ||||   || ||||||||||| |||||||||||||| || ||||| | ||| ||||||||||||    
T  6326 agttgaatgccttggtctttaattttcttgactaatacaatagccttgtcaacatgatggtttttgcataatgcatctattaaagaattgtaagtg 6231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 47; Significance: 2e-17; HSPs: 6)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 532 - 730
Target Start/End: Original strand, 121249 - 121446
Alignment:
Q  532 atagcccttaataagaagattctgataaaccacttgtgcatccttaagtccttccatttttgcatagtccgtcaacaagtatagtgtaagtatacatatt 631  Q
    |||||| ||||| | ||||| |||| ||| ||||||||||| || ||||| |||| | |||||||||||| || | ||||||| |||| || |  |||||    
T  121249 atagcctttaatcaaaagatcctgaaaaatcacttgtgcattctcaagtc-ttccttctttgcatagtccatcgataagtatattgtatgtgttaatatt 121347  T
Q  632 tggctgaattccttggtctttgatcttcgttaataatgtgattgccttgtcaacctgatggtttttgcacaaagcatccaataaggaattgtaagtgat 730  Q
     || ||||| || || ||||| || ||| | |  ||||  |||||||||||||| ||||| |||||||| ||||||| ||||||||||||||| |||||    
T  121348 gggttgaatgccctgatctttaattttcttgaccaatgcaattgccttgtcaacttgatgatttttgcataaagcatgcaataaggaattgtatgtgat 121446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 316 - 448
Target Start/End: Original strand, 121033 - 121165
Alignment:
Q  316 ttacaatatacctctaacaatcatttcatgaagaagtttcaccgccttatcattcttgccgttttcaaacaaagcacgaataagagtttcgtaagttaca 415  Q
    |||||| | |||||||  |||||||||| | ||||||||| | |||||||||||||   | |||| ||| | |||   ||||| |||||| |||||||||    
T  121033 ttacaacagacctctagtaatcatttcacgtagaagtttctctgccttatcattctcatcatttttaaaaagagcgtaaataatagtttcataagttaca 121132  T
Q  416 gcattaggggtgcaaccgttgtcttccattttt 448  Q
     ||| ||| |||||||| |||||||||||||||    
T  121133 acatcaggagtgcaaccattgtcttccattttt 121165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 316 - 500
Target Start/End: Complemental strand, 137820 - 137636
Alignment:
Q  316 ttacaatatacctctaacaatcatttcatgaagaagtttcaccgccttatcattcttgccgttttcaaacaaagcacgaataagagtttcgtaagttaca 415  Q
    |||||||| ||||||| ||| ||||||| ||||||||||| ||||||| ||||| |   | || | ||| | ||  || |||| |||||| |||||||||    
T  137820 ttacaatagacctctagcaaccatttcacgaagaagtttctccgccttttcattgtaatctttataaaagagagagcggataatagtttcataagttaca 137721  T
Q  416 gcattaggggtgcaaccgttgtcttccatttttgacactaaggacaatgcgtcatcaaacaagccctctttacaaagcccattga 500  Q
     |||||||  ||  | | || || |||||||||||||  |||| |  ||| | |||||||||||||||||||||||| |||||||    
T  137720 acattaggattgatatcattatcctccatttttgacaacaaggcctctgctttatcaaacaagccctctttacaaagtccattga 137636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 590 - 727
Target Start/End: Original strand, 104564 - 104701
Alignment:
Q  590 tttgcatagtccgtcaacaagtatagtgtaagtatacatatttggctgaattccttggtctttgatcttcgttaataatgtgattgccttgtcaacctga 689  Q
    ||||||||  || |||| ||||||| |||| || ||||||| ||| ||||| ||||||||||| || ||| | | |||||| || || |||||||  |||    
T  104564 tttgcataacccatcaataagtatattgtatgtgtacatatctggttgaatgccttggtctttaattttcttgactaatgtcatagctttgtcaagatga 104663  T
Q  690 tggtttttgcacaaagcatccaataaggaattgtaagt 727  Q
    | ||||||||| |||||||| | ||| ||| |||||||    
T  104664 ttgtttttgcataaagcatctattaaagaactgtaagt 104701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 590 - 709
Target Start/End: Complemental strand, 137547 - 137428
Alignment:
Q  590 tttgcatagtccgtcaacaagtatagtgtaagtatacatatttggctgaattccttggtctttgatcttcgttaataatgtgattgccttgtcaacctga 689  Q
    ||||||||  || |||| ||||||| |||| || ||||||||||| ||||| ||||||||||| || ||| | | |||||  || || |||||||  |||    
T  137547 tttgcataacccatcaataagtatattgtatgtgtacatatttggttgaatgccttggtctttaattttcttgactaatgcaatagctttgtcaagatga 137448  T
Q  690 tggtttttgcacaaagcatc 709  Q
    | ||||||||| ||||||||    
T  137447 ttgtttttgcataaagcatc 137428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 325 - 504
Target Start/End: Complemental strand, 140697 - 140518
Alignment:
Q  325 acctctaacaatcatttcatgaagaagtttcaccgccttatcattcttgccgttttcaaacaaagcacgaataagagtttcgtaagttacagcattaggg 424  Q
    ||||||| ||||||||||| ||||||||||| ||||||  |||||||   | || | ||| | ||| || || | |||| | ||||||||||||| |||     
T  140697 acctctagcaatcatttcacgaagaagtttctccgcctgttcattctcatctttatgaaagagagcccggatgatagttacataagttacagcatcagga 140598  T
Q  425 gtgcaaccgttgtcttccatttttgacactaaggacaatgcgtcatcaaacaagccctctttacaaagcccattgaccat 504  Q
     ||  ||| ||||| |||||||| ||||  ||||    | | ||||||||||| |||||||||||||| |||||||||||    
T  140597 atgataccattgtcatccattttagacatcaaggcatctacttcatcaaacaacccctctttacaaagtccattgaccat 140518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0308 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 402 - 640
Target Start/End: Complemental strand, 9355 - 9118
Alignment:
Q  402 tttcgtaagttacagcattaggggtgcaaccgttgtcttccatttttgacactaaggacaatgcgtcatcaaacaagccctctttacaaagcccattgac 501  Q
    ||||| ||||||||||||||||  ||||||| |||||||||||||||||||  |  | ||| || ||||||| ||||||||||  |||||| |||||||     
T  9355 tttcgaaagttacagcattaggaatgcaaccattgtcttccatttttgacaacagagccaaagcttcatcaagcaagccctctaaacaaagaccattgat 9256  T
Q  502 catcacactatacattttaacatctaaatgatagcccttaataagaagattctgataaaccacttgtgcatccttaagtccttccatttttgcatagtcc 601  Q
    ||| | | ||||  |    ||   |||||  ||||| ||||| | |||||  ||| ||| ||||||||| ||||||||| ||||| | ||||||||||||    
T  9255 cataatattatatgtccatactgttaaattgtagcctttaatgaaaagatcttgaaaaatcacttgtgcgtccttaagt-cttccttgtttgcatagtcc 9157  T
Q  602 gtcaacaagtatagtgtaagtatacatatttggctgaat 640  Q
     || | ||||||| |||| || ||||||||||| |||||    
T  9156 atcgataagtatattgtatgtgtacatatttggttgaat 9118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 335 - 500
Target Start/End: Original strand, 15062448 - 15062613
Alignment:
Q  335 atcatttcatgaagaagtttcaccgccttatcattcttgccgttttcaaacaaagcacgaataagagtttcgtaagttacagcattaggggtgcaaccgt 434  Q
    ||||||||| ||||||||||| | || |||||||| |   | |||||||| | || | |||||||  |||||||||||| |||||||||  ||||||| |    
T  15062448 atcatttcacgaagaagtttctctgctttatcattttcatctttttcaaagagagaatgaataagtatttcgtaagttatagcattaggaatgcaaccat 15062547  T
Q  435 tgtcttccatttttgacactaaggacaatgcgtcatcaaacaagccctctttacaaagcccattga 500  Q
    |||||| |||||||||||  | || |||| | |||||||| |||||||  |||||||  |||||||    
T  15062548 tgtctttcatttttgacagcatggccaatccttcatcaaagaagcccttgttacaaaatccattga 15062613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0573 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0573
Description:

Target: scaffold0573; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 612 - 727
Target Start/End: Complemental strand, 4288 - 4173
Alignment:
Q  612 atagtgtaagtatacatatttggctgaattccttggtctttgatcttcgttaataatgtgattgccttgtcaacctgatggtttttgcacaaagcatcca 711  Q
    |||||||| || ||||||||||| ||||  || |||||||| |  || ||||||||||  |||||||||||| |  ||||||||||||| ||||||||||    
T  4288 atagtgtatgtgtacatatttggttgaagaccctggtctttcaattttgttaataatgcaattgccttgtcacctggatggtttttgcataaagcatcca 4189  T
Q  712 ataaggaattgtaagt 727  Q
    |||  ||| |||||||    
T  4188 atagagaactgtaagt 4173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 316 - 371
Target Start/End: Original strand, 30871 - 30926
Alignment:
Q  316 ttacaatatacctctaacaatcatttcatgaagaagtttcaccgccttatcattct 371  Q
    |||||||| ||||||||||||||||||| ||||||||||| ||||||| |||||||    
T  30871 ttacaatagacctctaacaatcatttcacgaagaagtttctccgccttttcattct 30926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 532 - 761
Target Start/End: Original strand, 1064 - 1293
Alignment:
Q  532 atagcccttaataagaagattctgataaaccacttgtgcatccttaagtccttccatttttgcatagtccgtcaacaagtatagtgtaagtatacatatt 631  Q
    |||||| ||||| | ||||| |||| ||| ||||||||||| || ||||| |||| | |||||||||||| || | ||||||| |||| || |  |||||    
T  1064 atagcctttaatcaaaagatcctgaaaaatcacttgtgcattctcaagtc-ttccttctttgcatagtccatcgataagtatactgtatgtgttaatatt 1162  T
Q  632 tggctgaattccttggtctttgatcttcgttaataatgtgattgccttgtcaacctgatggtttttgcacaaagcatccaataaggaattgtaagtgatg 731  Q
     || ||||| || || ||||| || ||| | |  ||||  |||||||||||||| ||||| ||||| || ||||| |  || |||||||||||||||||     
T  1163 gggttgaatgccctgatctttaattttcttgaccaatgcaattgccttgtcaacttgatgatttttacataaagcgtgtaagaaggaattgtaagtgatc 1262  T
Q  732 acatcagca-gttggcctatattatgcatct 761  Q
    ||||| ||| |||| ||| ||| ||||||||    
T  1263 acatcggcaggttgacctctatcatgcatct 1293  T

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Target: scaffold0177 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0177
Description:

Target: scaffold0177; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 532 - 741
Target Start/End: Complemental strand, 27583 - 27375
Alignment:
Q  532 atagcccttaataagaagattctgataaaccacttgtgcatccttaagtccttccatttttgcatagtccgtcaacaagtatagtgtaagtatacatatt 631  Q
    |||||| ||||| | ||||| |||| ||| ||||||||||| || || || |||| | |||||||||||| || | ||||||| |||| || |  |||||    
T  27583 atagcctttaatcaaaagatcctgaaaaatcacttgtgcattctcaaatc-ttccttctttgcatagtccatcgataagtatattgtacgtgttaatatt 27485  T
Q  632 tggctgaattccttggtctttgatcttcgttaataatgtgattgccttgtcaacctgatggtttttgcacaaagcatccaataaggaattgtaagtgatg 731  Q
    ||| ||||| ||||||||||| || ||| | |  ||||  | |||||||||||| || |||||||| || ||||||| ||| |||||  |||| |||||     
T  27484 tggttgaatgccttggtctttaattttcttgaccaatgcaactgccttgtcaacttggtggtttttacataaagcatgcaagaaggaggtgtatgtgatt 27385  T
Q  732 acatcagcag 741  Q
    ||||| ||||    
T  27384 acatcggcag 27375  T

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Target: scaffold0237 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 660 - 727
Target Start/End: Complemental strand, 22446 - 22379
Alignment:
Q  660 gttaataatgtgattgccttgtcaacctgatggtttttgcacaaagcatccaataaggaattgtaagt 727  Q
    ||||||||||| ||||| ||||| || ||||| |||||||| |||||||||||||  |||||||||||    
T  22446 gttaataatgtaattgctttgtccacatgatgttttttgcataaagcatccaatatagaattgtaagt 22379  T

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Target: scaffold0051 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 316 - 452
Target Start/End: Original strand, 42871 - 43007
Alignment:
Q  316 ttacaatatacctctaacaatcatttcatgaagaagtttcaccgccttatcattcttgccgttttcaaacaaagcacgaataagagtttcgtaagttaca 415  Q
    ||||| || ||||||||||||||||||| | || |||||| | ||| | || |||||  | |||||||| | |||||||||||  |||||  ||||||||    
T  42871 ttacagtagacctctaacaatcatttcacgtagtagtttctctgccctttcgttcttatcattttcaaagagagcacgaataattgtttcacaagttaca 42970  T
Q  416 gcattaggggtgcaaccgttgtcttccatttttgaca 452  Q
    |||| |||    || || |||||||||||||||||||    
T  42971 gcatcaggaacacatccattgtcttccatttttgaca 43007  T

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Target: scaffold0051; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 533 - 649
Target Start/End: Original strand, 43088 - 43203
Alignment:
Q  533 tagcccttaataagaagattctgataaaccacttgtgcatccttaagtccttccatttttgcatagtccgtcaacaagtatagtgtaagtatacatattt 632  Q
    ||||| ||||| | ||||| |||| ||| |||||||||||||||||| |||||| |  ||||||||||| |||| ||||||| |||| || ||||| | |    
T  43088 tagcctttaatcaaaagatcctgaaaaatcacttgtgcatccttaag-ccttccttgcttgcatagtccatcaataagtatattgtatgtgtacatgtct 43186  T
Q  633 ggctgaattccttggtc 649  Q
     | ||||| ||||||||    
T  43187 agttgaatgccttggtc 43203  T

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Target: scaffold0654 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0654
Description:

Target: scaffold0654; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 672 - 735
Target Start/End: Original strand, 1128 - 1191
Alignment:
Q  672 attgccttgtcaacctgatggtttttgcacaaagcatccaataaggaattgtaagtgatgacat 735  Q
    |||||||||||||| ||||||||||| || ||||| |  || ||||||||||||||||| ||||    
T  1128 attgccttgtcaacttgatggtttttacataaagcgtgtaagaaggaattgtaagtgatcacat 1191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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