View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1607-INSERTION-15 (Length: 846)

Name: NF1607-INSERTION-15
Description: NF1607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1607-INSERTION-15
NF1607-INSERTION-15
[»] chr5 (29 HSPs)
chr5 (300-628)||(26886949-26887273)
chr5 (53-180)||(26887409-26887536)
chr5 (269-439)||(26888341-26888511)
chr5 (294-418)||(16095643-16095767)
chr5 (797-839)||(26886824-26886866)
chr5 (701-736)||(26886884-26886919)
chr5 (383-418)||(28819560-28819595)
chr5 (383-418)||(35599337-35599372)
chr5 (384-418)||(9751675-9751709)
chr5 (383-429)||(13948580-13948626)
chr5 (385-418)||(11890099-11890132)
chr5 (382-418)||(11957645-11957681)
chr5 (689-737)||(26880584-26880632)
chr5 (382-418)||(41064169-41064205)
chr5 (383-418)||(9750472-9750507)
chr5 (383-418)||(15060188-15060223)
chr5 (383-418)||(15061821-15061856)
chr5 (383-418)||(15616497-15616532)
chr5 (383-418)||(25453871-25453906)
chr5 (251-306)||(26887278-26887332)
chr5 (383-418)||(28820553-28820588)
chr5 (383-418)||(35600536-35600571)
chr5 (384-418)||(21776905-21776939)
chr5 (381-439)||(25962805-25962863)
chr5 (384-422)||(30796599-30796637)
chr5 (381-418)||(9673125-9673162)
chr5 (389-418)||(19599995-19600024)
chr5 (385-422)||(33847768-33847805)
chr5 (385-422)||(37274768-37274805)
[»] chr3 (31 HSPs)
chr3 (53-179)||(12072527-12072653)
chr3 (270-439)||(14825961-14826129)
chr3 (251-418)||(14824775-14824952)
chr3 (73-179)||(14825029-14825135)
chr3 (251-439)||(12072733-12072918)
chr3 (267-439)||(12071517-12071691)
chr3 (295-358)||(3188266-3188329)
chr3 (53-145)||(3190281-3190373)
chr3 (53-145)||(3207204-3207296)
chr3 (300-360)||(3190543-3190603)
chr3 (295-360)||(3207463-3207528)
chr3 (383-418)||(4218864-4218899)
chr3 (383-418)||(18142195-18142230)
chr3 (383-429)||(29184979-29185025)
chr3 (381-422)||(19756882-19756923)
chr3 (135-179)||(3207307-3207351)
chr3 (382-418)||(34062335-34062371)
chr3 (383-418)||(10616771-10616806)
chr3 (382-417)||(11360344-11360379)
chr3 (383-418)||(15086247-15086282)
chr3 (383-418)||(18140964-18140999)
chr3 (383-418)||(37977504-37977539)
chr3 (383-418)||(38843547-38843582)
chr3 (383-418)||(54567741-54567776)
chr3 (384-418)||(10615299-10615333)
chr3 (384-418)||(45291444-45291478)
chr3 (381-418)||(18945824-18945861)
chr3 (382-415)||(31636494-31636527)
chr3 (385-418)||(46610033-46610066)
chr3 (383-416)||(48044300-48044333)
chr3 (385-418)||(54566535-54566568)
[»] chr6 (19 HSPs)
chr6 (61-180)||(22252948-22253067)
chr6 (269-439)||(22253161-22253328)
chr6 (301-372)||(21939191-21939262)
chr6 (383-418)||(14328644-14328679)
chr6 (383-418)||(14421654-14421689)
chr6 (383-418)||(2741572-2741607)
chr6 (383-418)||(14327393-14327428)
chr6 (383-418)||(14420403-14420438)
chr6 (383-418)||(24234354-24234389)
chr6 (383-418)||(24235628-24235663)
chr6 (384-418)||(3062215-3062249)
chr6 (384-418)||(22056507-22056541)
chr6 (384-418)||(22058277-22058311)
chr6 (381-418)||(308554-308591)
chr6 (381-418)||(21226954-21226991)
chr6 (381-418)||(24602639-24602676)
chr6 (381-418)||(29239697-29239734)
chr6 (381-418)||(31733281-31733318)
chr6 (384-429)||(34762195-34762240)
[»] chr4 (17 HSPs)
chr4 (560-628)||(39300974-39301042)
chr4 (385-422)||(51164020-51164057)
chr4 (272-360)||(46633513-46633600)
chr4 (383-418)||(34027192-34027227)
chr4 (383-423)||(4432985-4433025)
chr4 (382-418)||(12566935-12566971)
chr4 (383-439)||(24700295-24700351)
chr4 (382-418)||(34741390-34741426)
chr4 (383-418)||(9136402-9136437)
chr4 (383-418)||(44199852-44199887)
chr4 (383-418)||(50881420-50881455)
chr4 (383-422)||(51162098-51162137)
chr4 (383-417)||(20612991-20613025)
chr4 (396-430)||(41332749-41332783)
chr4 (381-422)||(30966632-30966673)
chr4 (381-422)||(35370174-35370215)
chr4 (385-418)||(54554407-54554440)
[»] chr8 (20 HSPs)
chr8 (301-418)||(9768220-9768337)
chr8 (383-418)||(34901526-34901561)
chr8 (383-418)||(39513891-39513926)
chr8 (381-439)||(25653707-25653765)
chr8 (381-418)||(31343598-31343635)
chr8 (382-418)||(27164655-27164691)
chr8 (384-415)||(2270290-2270321)
chr8 (382-417)||(6819221-6819256)
chr8 (383-418)||(31986226-31986261)
chr8 (383-418)||(39808672-39808707)
chr8 (383-418)||(40702008-40702043)
chr8 (381-439)||(2873452-2873510)
chr8 (381-423)||(22686973-22687015)
chr8 (384-418)||(39810085-39810119)
chr8 (381-418)||(11424332-11424369)
chr8 (381-418)||(20076380-20076417)
chr8 (389-418)||(31985036-31985065)
chr8 (381-418)||(37611299-37611336)
chr8 (384-429)||(39515121-39515166)
chr8 (385-418)||(42348986-42349019)
[»] chr1 (22 HSPs)
chr1 (294-360)||(47839873-47839939)
chr1 (383-418)||(33667630-33667665)
chr1 (384-418)||(1825318-1825352)
chr1 (381-439)||(38741478-38741536)
chr1 (381-418)||(24730199-24730236)
chr1 (382-418)||(7780218-7780254)
chr1 (382-418)||(14625394-14625430)
chr1 (381-432)||(6607404-6607455)
chr1 (385-432)||(12277198-12277245)
chr1 (383-422)||(24545477-24545516)
chr1 (383-418)||(26095838-26095873)
chr1 (383-418)||(33934662-33934697)
chr1 (383-418)||(47146366-47146401)
chr1 (384-418)||(1826433-1826467)
chr1 (381-439)||(4488707-4488765)
chr1 (384-418)||(26097026-26097060)
chr1 (384-429)||(6225366-6225410)
chr1 (381-418)||(15961737-15961774)
chr1 (385-418)||(16785746-16785779)
chr1 (383-416)||(31838805-31838838)
chr1 (384-417)||(49201384-49201417)
chr1 (381-418)||(50721922-50721959)
[»] chr7 (15 HSPs)
chr7 (382-418)||(1589410-1589446)
chr7 (381-439)||(42509034-42509092)
chr7 (389-422)||(21237349-21237382)
chr7 (383-423)||(9554257-9554297)
chr7 (382-418)||(17763361-17763397)
chr7 (382-418)||(48168874-48168910)
chr7 (383-418)||(5219034-5219069)
chr7 (383-418)||(17764697-17764732)
chr7 (381-432)||(19336053-19336104)
chr7 (383-418)||(45865649-45865684)
chr7 (381-439)||(21444179-21444237)
chr7 (382-432)||(24757371-24757421)
chr7 (295-418)||(47161666-47161789)
chr7 (381-418)||(10659956-10659993)
chr7 (381-422)||(48848136-48848177)
[»] scaffold0136 (1 HSPs)
scaffold0136 (383-422)||(35619-35658)
[»] chr2 (19 HSPs)
chr2 (383-418)||(22468222-22468257)
chr2 (383-418)||(22474443-22474478)
chr2 (385-439)||(9468520-9468574)
chr2 (383-429)||(44242353-44242399)
chr2 (381-418)||(7576350-7576387)
chr2 (382-418)||(1902955-1902991)
chr2 (381-429)||(23045180-23045228)
chr2 (383-418)||(22467006-22467041)
chr2 (383-418)||(28462491-28462526)
chr2 (382-429)||(30371398-30371445)
chr2 (381-439)||(874356-874414)
chr2 (383-429)||(44241110-44241156)
chr2 (384-418)||(44366892-44366926)
chr2 (385-418)||(15749008-15749041)
chr2 (385-418)||(16670523-16670556)
chr2 (385-418)||(23834606-23834639)
chr2 (381-418)||(31108371-31108408)
chr2 (381-418)||(34831516-34831553)
chr2 (381-418)||(43015197-43015234)
[»] scaffold0725 (1 HSPs)
scaffold0725 (384-418)||(4955-4989)
[»] scaffold0176 (1 HSPs)
scaffold0176 (383-418)||(285-320)
[»] scaffold0014 (2 HSPs)
scaffold0014 (383-418)||(228584-228619)
scaffold0014 (389-418)||(227394-227423)
[»] scaffold0001 (1 HSPs)
scaffold0001 (381-418)||(53518-53555)


Alignment Details
Target: chr5 (Bit Score: 140; Significance: 7e-73; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 140; E-Value: 7e-73
Query Start/End: Original strand, 300 - 628
Target Start/End: Complemental strand, 26887273 - 26886949
Alignment:
Q  300 atcagcgaatctgatgagttggatgggtcagggtctatttctgaaaaatctttattttacatgaacggaatcttnnnnnnntattttacagggggcaaaa 399  Q
    |||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||        |||||||||| || |||||    
T  26887273 atcagcgaatctgatgagttggatggatcagggtctatttctaaagaatctttattttacatgaacggaatctaaaaaaaatattttacagaggacaaaa 26887174  T
Q  400 ccaaaagtgacctatattataggaagtaaaacattattaaacnnnnnnnntatatatgttgtaaccaaatgtcaacannnnnnnnnnngataaatcaaag 499  Q
     |||||||||| |||||||||||   ||||||| |||||  |          ||||||||||| |||||||||||||           ||||||||| |     
T  26887173 tcaaaagtgacatatattataggggataaaacactattacccaaaaag----tatatgttgtagccaaatgtcaacatttttttt---gataaatcataa 26887081  T
Q  500 tttaggtgagtaatctcatagtgtgtgc---ctgggtgagaagtcccaagactcaaagagtgttaacatttttccattttacaagctaggcaatgttaac 596  Q
    ||||||||||||||||||||||||||     ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  26887080 tttaggtgagtaatctcatagtgtgtcatctctgggtgagaagtcccaagactctaagagtgttaacatttttccattttacaagctaggcaatgttaac 26886981  T
Q  597 atgaaacattggaaaattgtaaaatatagaag 628  Q
    || |||||||||||||||||||||||||||||    
T  26886980 ataaaacattggaaaattgtaaaatatagaag 26886949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 53 - 180
Target Start/End: Complemental strand, 26887536 - 26887409
Alignment:
Q  53 aagagaagaggaagtggtgttgatgttgaaggagagattgaggtttttggtttaagaataatgnnnnnnntgactattaaagggatgaagatgaagaaca 152  Q
    ||||||||||||||||  |||||||||||||||||||||||| ||||||||||||||||||||       ||||||||||||||||||||||||||||||    
T  26887536 aagagaagaggaagtgtcgttgatgttgaaggagagattgagttttttggtttaagaataatgaaaaaaatgactattaaagggatgaagatgaagaaca 26887437  T
Q  153 tgttgttggtgatgatgaagatcttatg 180  Q
    ||||||||||||||||||||||||||||    
T  26887436 tgttgttggtgatgatgaagatcttatg 26887409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 269 - 439
Target Start/End: Original strand, 26888341 - 26888511
Alignment:
Q  269 gtaatcaaaaaatgctgagtcaacatgccatatcagcgaatctgatgagttggatgggtcagggtctatttctgaaaaatctttattttacatgaacgga 368  Q
    |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||| ||||||| | ||| |    
T  26888341 gtaatcaaaaaatgatgagtcaacgtgccatatcagcgaatctgatgagttggatggatcagggtctatttttgaagaatctttcttttacaaggacgaa 26888440  T
Q  369 atcttnnnnnnntattttacagggggcaaaaccaaaagtgacctatattataggaagtaaaacattattaa 439  Q
    ||||        |||||||||||||||||||||||||||||||||||||||||   |||||||| ||||||    
T  26888441 atctaaaaaaaatattttacagggggcaaaaccaaaagtgacctatattatagagggtaaaacactattaa 26888511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 294 - 418
Target Start/End: Original strand, 16095643 - 16095767
Alignment:
Q  294 tgccatatcagcgaatctgatgagttggatgggtcagggtctatttctgaaaaatctttattttacatgaacggaatcttnnnnnnntattttacagggg 393  Q
    ||||| ||||| |||||||||||||||||||||| | |||| |||||| || |||||||||||||||   ||| |||||          |||||||||||    
T  16095643 tgccacatcagtgaatctgatgagttggatgggttatggtccatttctaaagaatctttattttacaaagacgaaatctaaaaaaaaatttttacagggg 16095742  T
Q  394 gcaaaaccaaaagtgacctatatta 418  Q
    |||||| |||||||||| |||||||    
T  16095743 gcaaaatcaaaagtgacatatatta 16095767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 797 - 839
Target Start/End: Complemental strand, 26886866 - 26886824
Alignment:
Q  797 aatcccatcagaatcaaatcaaatattattgtagctttatttt 839  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  26886866 aatcccattagaatcaaatcaaatattattgtagctttatttt 26886824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 701 - 736
Target Start/End: Complemental strand, 26886919 - 26886884
Alignment:
Q  701 atatatctgttttcttacgattagaaaaggaaaaaa 736  Q
    ||||||||||||||||||||||||||||||||||||    
T  26886919 atatatctgttttcttacgattagaaaaggaaaaaa 26886884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 383 - 418
Target Start/End: Complemental strand, 28819595 - 28819560
Alignment:
Q  383 ttttacagggggcaaaaccaaaagtgacctatatta 418  Q
    ||||||||||||||||||||||||||||||||||||    
T  28819595 ttttacagggggcaaaaccaaaagtgacctatatta 28819560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 383 - 418
Target Start/End: Complemental strand, 35599372 - 35599337
Alignment:
Q  383 ttttacagggggcaaaaccaaaagtgacctatatta 418  Q
    ||||||||||||||||||||||||||||||||||||    
T  35599372 ttttacagggggcaaaaccaaaagtgacctatatta 35599337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 384 - 418
Target Start/End: Original strand, 9751675 - 9751709
Alignment:
Q  384 tttacagggggcaaaaccaaaagtgacctatatta 418  Q
    |||||||||||||||||||||||||||||||||||    
T  9751675 tttacagggggcaaaaccaaaagtgacctatatta 9751709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 383 - 429
Target Start/End: Original strand, 13948580 - 13948626
Alignment:
Q  383 ttttacagggggcaaaaccaaaagtgacctatattataggaagtaaa 429  Q
    |||||||||||||||||||||||||| ||||||||| |||| |||||    
T  13948580 ttttacagggggcaaaaccaaaagtgccctatattacaggaggtaaa 13948626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 385 - 418
Target Start/End: Original strand, 11890099 - 11890132
Alignment:
Q  385 ttacagggggcaaaaccaaaagtgacctatatta 418  Q
    ||||||||||||||||||||||||||||||||||    
T  11890099 ttacagggggcaaaaccaaaagtgacctatatta 11890132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 382 - 418
Target Start/End: Original strand, 11957645 - 11957681
Alignment:
Q  382 attttacagggggcaaaaccaaaagtgacctatatta 418  Q
    ||||||||||||||||||||||||||| |||||||||    
T  11957645 attttacagggggcaaaaccaaaagtgccctatatta 11957681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 689 - 737
Target Start/End: Complemental strand, 26880632 - 26880584
Alignment:
Q  689 tttatagatttaatatatctgttttcttacgattagaaaaggaaaaaag 737  Q
    |||||||||||||| ||| ||||||||||| | ||||||||||||||||    
T  26880632 tttatagatttaatttatttgttttcttacaaatagaaaaggaaaaaag 26880584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 382 - 418
Target Start/End: Complemental strand, 41064205 - 41064169
Alignment:
Q  382 attttacagggggcaaaaccaaaagtgacctatatta 418  Q
    ||||||||||||||||||||||||||| |||||||||    
T  41064205 attttacagggggcaaaaccaaaagtgccctatatta 41064169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 383 - 418
Target Start/End: Complemental strand, 9750507 - 9750472
Alignment:
Q  383 ttttacagggggcaaaaccaaaagtgacctatatta 418  Q
    ||||||||||| ||||||||||||||||||||||||    
T  9750507 ttttacaggggacaaaaccaaaagtgacctatatta 9750472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 383 - 418
Target Start/End: Complemental strand, 15060223 - 15060188
Alignment:
Q  383 ttttacagggggcaaaaccaaaagtgacctatatta 418  Q
    |||||||||||||||||||||||||| |||||||||    
T  15060223 ttttacagggggcaaaaccaaaagtgtcctatatta 15060188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 383 - 418
Target Start/End: Original strand, 15061821 - 15061856
Alignment:
Q  383 ttttacagggggcaaaaccaaaagtgacctatatta 418  Q
    |||||||||||||||||||||||||| |||||||||    
T  15061821 ttttacagggggcaaaaccaaaagtgccctatatta 15061856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 383 - 418
Target Start/End: Original strand, 15616497 - 15616532
Alignment:
Q  383 ttttacagggggcaaaaccaaaagtgacctatatta 418  Q
    |||||||||||||||||||||||||| |||||||||    
T  15616497 ttttacagggggcaaaaccaaaagtgtcctatatta 15616532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 383 - 418
Target Start/End: Original strand, 25453871 - 25453906
Alignment:
Q  383 ttttacagggggcaaaaccaaaagtgacctatatta 418  Q
    |||||||||||||||||||||||||||| |||||||    
T  25453871 ttttacagggggcaaaaccaaaagtgacatatatta 25453906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 251 - 306
Target Start/End: Complemental strand, 26887332 - 26887278
Alignment:
Q  251 tacaatcacggtgcctacgtaatcaaaaaatgctgagtcaacatgccatatcagcg 306  Q
    |||||| |||||||| || |||||||||||||||  ||||||||||||||||||||    
T  26887332 tacaattacggtgcc-acataatcaaaaaatgcttggtcaacatgccatatcagcg 26887278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 383 - 418
Target Start/End: Original strand, 28820553 - 28820588
Alignment:
Q  383 ttttacagggggcaaaaccaaaagtgacctatatta 418  Q
    ||||||||||||||||| ||||||||||||||||||    
T  28820553 ttttacagggggcaaaatcaaaagtgacctatatta 28820588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 383 - 418
Target Start/End: Original strand, 35600536 - 35600571
Alignment:
Q  383 ttttacagggggcaaaaccaaaagtgacctatatta 418  Q
    ||||||| ||||||||||||||||||||||||||||    
T  35600536 ttttacaaggggcaaaaccaaaagtgacctatatta 35600571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 384 - 418
Target Start/End: Original strand, 21776905 - 21776939
Alignment:
Q  384 tttacagggggcaaaaccaaaagtgacctatatta 418  Q
    ||||||||||||||||||||||||| |||||||||    
T  21776905 tttacagggggcaaaaccaaaagtgccctatatta 21776939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 381 - 439
Target Start/End: Complemental strand, 25962863 - 25962805
Alignment:
Q  381 tattttacagggggcaaaaccaaaagtgacctatattataggaagtaaaacattattaa 439  Q
    |||||||||||||| |||||| ||| |||||||||||| |||  |||||||| ||||||    
T  25962863 tattttacagggggtaaaaccgaaaatgacctatattacagggggtaaaacactattaa 25962805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 384 - 422
Target Start/End: Complemental strand, 30796637 - 30796599
Alignment:
Q  384 tttacagggggcaaaaccaaaagtgacctatattatagg 422  Q
    |||||| |||||||||||||||||| |||||||||||||    
T  30796637 tttacaaggggcaaaaccaaaagtgccctatattatagg 30796599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 381 - 418
Target Start/End: Original strand, 9673125 - 9673162
Alignment:
Q  381 tattttacagggggcaaaaccaaaagtgacctatatta 418  Q
    |||||||||||||| |||||||||| ||||||||||||    
T  9673125 tattttacaggggggaaaaccaaaaatgacctatatta 9673162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 389 - 418
Target Start/End: Complemental strand, 19600024 - 19599995
Alignment:
Q  389 agggggcaaaaccaaaagtgacctatatta 418  Q
    ||||||||||||||||||||||||||||||    
T  19600024 agggggcaaaaccaaaagtgacctatatta 19599995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 385 - 422
Target Start/End: Original strand, 33847768 - 33847805
Alignment:
Q  385 ttacagggggcaaaaccaaaagtgacctatattatagg 422  Q
    |||||||||||||||||||||||| | |||||||||||    
T  33847768 ttacagggggcaaaaccaaaagtggcgtatattatagg 33847805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 385 - 422
Target Start/End: Complemental strand, 37274805 - 37274768
Alignment:
Q  385 ttacagggggcaaaaccaaaagtgacctatattatagg 422  Q
    |||||||||||||||||||||||  |||||||||||||    
T  37274805 ttacagggggcaaaaccaaaagtaccctatattatagg 37274768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 1e-40; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 53 - 179
Target Start/End: Original strand, 12072527 - 12072653
Alignment:
Q  53 aagagaagaggaagtggtgttgatgttgaaggagagattgaggtttttggtttaagaataatgnnnnnnntgactattaaagggatgaagatgaagaaca 152  Q
    |||||||||||||||| |||||||||||||||||| |||||| |||||||||||| |||||||       ||||||||||||||||||||||||||||||    
T  12072527 aagagaagaggaagtgttgttgatgttgaaggagacattgagttttttggtttaataataatgaaaaaaatgactattaaagggatgaagatgaagaaca 12072626  T
Q  153 tgttgttggtgatgatgaagatcttat 179  Q
    |||||||||| ||||||||||||||||    
T  12072627 tgttgttggtaatgatgaagatcttat 12072653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 270 - 439
Target Start/End: Original strand, 14825961 - 14826129
Alignment:
Q  270 taatcaaaaaatgctgagtcaacatgccatatcagcgaatctgatgagttggatgggtcagggtctatttctgaaaaatctttattttacatgaacggaa 369  Q
    ||||||||||||| ||||||||| || ||||||||||||||| || |||||||||| |||||||||||||||||| ||||||||||||||| | ||||||    
T  14825961 taatcaaaaaatgatgagtcaacgtgacatatcagcgaatctaat-agttggatggatcagggtctatttctgaagaatctttattttacaaggacggaa 14826059  T
Q  370 tcttnnnnnnntattttacagggggcaaaaccaaaagtgacctatattataggaagtaaaacattattaa 439  Q
    |||        ||||||||||||||||||||||||||||||  |||||| |||  |||||||| ||||||    
T  14826060 tctaaaaaaaatattttacagggggcaaaaccaaaagtgacaaatattacagggggtaaaacactattaa 14826129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 251 - 418
Target Start/End: Complemental strand, 14824952 - 14824775
Alignment:
Q  251 tacaatcacggtgcctacgtaatcaaaaaatgctgagtcaacatgccatatcagcg-----------aatctgatgagttggatgggtcagggtctattt 339  Q
    |||| |||||||||| ||||||||||| |||| ||||||||| |||||||||||||           |||||||||||||||||||||||||||||||||    
T  14824952 tacagtcacggtgcc-acgtaatcaaagaatgttgagtcaacgtgccatatcagcgccacatcagccaatctgatgagttggatgggtcagggtctattt 14824854  T
Q  340 ctgaaaaatctttattttacatgaacggaatcttnnnnnnntattttacagggggcaaaaccaaaagtgacctatatta 418  Q
     |||| ||||||||||||||| | |||||||||        ||||||||||||||||||| ||||||||||||||||||    
T  14824853 atgaagaatctttattttacaaggacggaatctaaaaaaaatattttacagggggcaaaatcaaaagtgacctatatta 14824775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 73 - 179
Target Start/End: Complemental strand, 14825135 - 14825029
Alignment:
Q  73 tgatgttgaaggagagattgaggtttttggtttaagaataatgnnnnnnntgactattaaagggatgaagatgaagaacatgttgttggtgatgatgaag 172  Q
    |||||||||||||||||||||| ||||||||||||||||||||       |||||||||||||||||||||||||||||||| |||| ||||| ||||||    
T  14825135 tgatgttgaaggagagattgagttttttggtttaagaataatgaaaaaaatgactattaaagggatgaagatgaagaacatgatgttcgtgattatgaag 14825036  T
Q  173 atcttat 179  Q
    |||||||    
T  14825035 atcttat 14825029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 251 - 439
Target Start/End: Original strand, 12072733 - 12072918
Alignment:
Q  251 tacaatcacggtgcctacgtaatcaaaaaatgctgagtcaacatgccatatcagcgaatctgatgagttggatgggtcagggtctatttctgaaaaatct 350  Q
    |||| |||||||||| | ||||| ||||| || ||||| ||| ||||| ||||||||| |||||||||||||||||||||| |||||||||||||||       
T  12072733 tacagtcacggtgcc-atgtaataaaaaagtgttgagttaacgtgccacatcagcgaacctgatgagttggatgggtcaggatctatttctgaaaaaaaa 12072831  T
Q  351 ttattttacatgaacggaatcttnnnnnnntattttacagggggcaaaaccaaaagtgacctatattataggaagtaaaacattattaa 439  Q
    ||||||||||   |||||||||         | ||||||| |||||||||||||||||||||||||||  ||  |||||||||||||||    
T  12072832 ttattttacaatgacggaatct--aaaagaaaatttacagcgggcaaaaccaaaagtgacctatattacggggggtaaaacattattaa 12072918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 267 - 439
Target Start/End: Complemental strand, 12071691 - 12071517
Alignment:
Q  267 acgtaatcaaaaaa-tgctgagtcaacatgccatatcagcgaatctgatgagttggatgggtcagggtctatttctgaaaaatctttattttacatgaac 365  Q
    |||||||||||||| || ||||||||| |||||||||| | |||||||||||||||||| || ||||||||| | | || ||||||||||||||| | ||    
T  12071691 acgtaatcaaaaaaatgatgagtcaacgtgccatatcaacaaatctgatgagttggatgtgttagggtctatgtataaagaatctttattttacaaggac 12071592  T
Q  366 ggaatct-tnnnnnnntattttacagggggcaaaaccaaaagtgacctatattataggaagtaaaacattattaa 439  Q
    |||||||         |||||||| | |||||||| ||||||||||||||||||  ||  |||||||||||||||    
T  12071591 ggaatctaaaaaaaaatattttactgagggcaaaatcaaaagtgacctatattacggggggtaaaacattattaa 12071517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 295 - 358
Target Start/End: Complemental strand, 3188329 - 3188266
Alignment:
Q  295 gccatatcagcgaatctgatgagttggatgggtcagggtctatttctgaaaaatctttatttta 358  Q
    |||| |||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  3188329 gccaaatcagcaaatctgatgagttggatgggtcaggggctatttctgaagaatctttatttta 3188266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 53 - 145
Target Start/End: Original strand, 3190281 - 3190373
Alignment:
Q  53 aagagaagaggaagtggtgttgatgttgaaggagagattgaggtttttggtttaagaataatgnnnnnnntgactattaaagggatgaagatg 145  Q
    |||||||||||||||| |||||||||||||||||| |||||| || || |||||| |||||||       ||| |||||||||||||||||||    
T  3190281 aagagaagaggaagtgttgttgatgttgaaggagatattgagtttgttagtttaataataatgaagaaaatgaatattaaagggatgaagatg 3190373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 53 - 145
Target Start/End: Original strand, 3207204 - 3207296
Alignment:
Q  53 aagagaagaggaagtggtgttgatgttgaaggagagattgaggtttttggtttaagaataatgnnnnnnntgactattaaagggatgaagatg 145  Q
    |||||||||||||||| |||||||||||||||||| |||||| || || |||||| |||||||       ||| |||||||||||||||||||    
T  3207204 aagagaagaggaagtgttgttgatgttgaaggagatattgagtttgttagtttaataataatgaagaaaatgaatattaaagggatgaagatg 3207296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 300 - 360
Target Start/End: Original strand, 3190543 - 3190603
Alignment:
Q  300 atcagcgaatctgatgagttggatgggtcagggtctatttctgaaaaatctttattttaca 360  Q
    ||||||||||||||||||||| |||| |||| | ||||||||||| |||||||||||||||    
T  3190543 atcagcgaatctgatgagttgaatggatcagtgactatttctgaagaatctttattttaca 3190603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 295 - 360
Target Start/End: Original strand, 3207463 - 3207528
Alignment:
Q  295 gccatatcagcgaatctgatgagttggatgggtcagggtctatttctgaaaaatctttattttaca 360  Q
    |||| ||||||||||||||||||||| |||  |||| | ||||||||||| |||||||||||||||    
T  3207463 gccacatcagcgaatctgatgagttgaatgaatcagtgactatttctgaagaatctttattttaca 3207528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 383 - 418
Target Start/End: Original strand, 4218864 - 4218899
Alignment:
Q  383 ttttacagggggcaaaaccaaaagtgacctatatta 418  Q
    ||||||||||||||||||||||||||||||||||||    
T  4218864 ttttacagggggcaaaaccaaaagtgacctatatta 4218899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 383 - 418
Target Start/End: Original strand, 18142195 - 18142230
Alignment:
Q  383 ttttacagggggcaaaaccaaaagtgacctatatta 418  Q
    ||||||||||||||||||||||||||||||||||||    
T  18142195 ttttacagggggcaaaaccaaaagtgacctatatta 18142230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 383 - 429
Target Start/End: Original strand, 29184979 - 29185025
Alignment:
Q  383 ttttacagggggcaaaaccaaaagtgacctatattataggaagtaaa 429  Q
    ||||||||| |||||||||||||||||||||||||| ||| ||||||    
T  29184979 ttttacaggaggcaaaaccaaaagtgacctatattacagggagtaaa 29185025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 381 - 422
Target Start/End: Complemental strand, 19756923 - 19756882
Alignment:
Q  381 tattttacagggggcaaaaccaaaagtgacctatattatagg 422  Q
    |||||||||||||| |||||||||| ||||||||||||||||    
T  19756923 tattttacaggggggaaaaccaaaaatgacctatattatagg 19756882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 179
Target Start/End: Original strand, 3207307 - 3207351
Alignment:
Q  135 ggatgaagatgaagaacatgttgttggtgatgatgaagatcttat 179  Q
    ||||||| |||| |||||||||||| |||||||||||||||||||    
T  3207307 ggatgaaaatgatgaacatgttgtttgtgatgatgaagatcttat 3207351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 382 - 418
Target Start/End: Original strand, 34062335 - 34062371
Alignment:
Q  382 attttacagggggcaaaaccaaaagtgacctatatta 418  Q
    ||||||||||||| |||||||||||||||||||||||    
T  34062335 attttacagggggaaaaaccaaaagtgacctatatta 34062371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 383 - 418
Target Start/End: Original strand, 10616771 - 10616806
Alignment:
Q  383 ttttacagggggcaaaaccaaaagtgacctatatta 418  Q
    |||||||||||||||||||||||||| |||||||||    
T  10616771 ttttacagggggcaaaaccaaaagtgccctatatta 10616806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 382 - 417
Target Start/End: Original strand, 11360344 - 11360379
Alignment:
Q  382 attttacagggggcaaaaccaaaagtgacctatatt 417  Q
    ||||||||||||| ||||||||||||||||||||||    
T  11360344 attttacaggggggaaaaccaaaagtgacctatatt 11360379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 383 - 418
Target Start/End: Complemental strand, 15086282 - 15086247
Alignment:
Q  383 ttttacagggggcaaaaccaaaagtgacctatatta 418  Q
    |||||||||||||||||||||||||| |||||||||    
T  15086282 ttttacagggggcaaaaccaaaagtgccctatatta 15086247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 383 - 418
Target Start/End: Complemental strand, 18140999 - 18140964
Alignment:
Q  383 ttttacagggggcaaaaccaaaagtgacctatatta 418  Q
    |||||||||| |||||||||||||||||||||||||    
T  18140999 ttttacagggagcaaaaccaaaagtgacctatatta 18140964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 383 - 418
Target Start/End: Original strand, 37977504 - 37977539
Alignment:
Q  383 ttttacagggggcaaaaccaaaagtgacctatatta 418  Q
    |||||||||||||||||||||||||| |||||||||    
T  37977504 ttttacagggggcaaaaccaaaagtgtcctatatta 37977539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 383 - 418
Target Start/End: Original strand, 38843547 - 38843582
Alignment:
Q  383 ttttacagggggcaaaaccaaaagtgacctatatta 418  Q
    |||||||||||||||||||||||||| |||||||||    
T  38843547 ttttacagggggcaaaaccaaaagtgtcctatatta 38843582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 383 - 418
Target Start/End: Original strand, 54567741 - 54567776
Alignment:
Q  383 ttttacagggggcaaaaccaaaagtgacctatatta 418  Q
    ||||| ||||||||||||||||||||||||||||||    
T  54567741 ttttatagggggcaaaaccaaaagtgacctatatta 54567776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 384 - 418
Target Start/End: Complemental strand, 10615333 - 10615299
Alignment:
Q  384 tttacagggggcaaaaccaaaagtgacctatatta 418  Q
    ||||||||||||||||||||||||| |||||||||    
T  10615333 tttacagggggcaaaaccaaaagtgccctatatta 10615299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 384 - 418
Target Start/End: Complemental strand, 45291478 - 45291444
Alignment:
Q  384 tttacagggggcaaaaccaaaagtgacctatatta 418  Q
    |||||| ||||||||||||||||||||||||||||    
T  45291478 tttacaaggggcaaaaccaaaagtgacctatatta 45291444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 381 - 418
Target Start/End: Complemental strand, 18945861 - 18945824
Alignment:
Q  381 tattttacagggggcaaaaccaaaagtgacctatatta 418  Q
    |||||||||||||| |||||||||| ||||||||||||    
T  18945861 tattttacagggggtaaaaccaaaaatgacctatatta 18945824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 382 - 415
Target Start/End: Complemental strand, 31636527 - 31636494
Alignment:
Q  382 attttacagggggcaaaaccaaaagtgacctata 415  Q
    ||||||||||||| ||||||||||||||||||||    
T  31636527 attttacagggggaaaaaccaaaagtgacctata 31636494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 385 - 418
Target Start/End: Complemental strand, 46610066 - 46610033
Alignment:
Q  385 ttacagggggcaaaaccaaaagtgacctatatta 418  Q
    |||||||||||||||||||||||| |||||||||    
T  46610066 ttacagggggcaaaaccaaaagtgccctatatta 46610033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 383 - 416
Target Start/End: Complemental strand, 48044333 - 48044300
Alignment:
Q  383 ttttacagggggcaaaaccaaaagtgacctatat 416  Q
    |||||||||||||||||||||||||| |||||||    
T  48044333 ttttacagggggcaaaaccaaaagtgccctatat 48044300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 385 - 418
Target Start/End: Complemental strand, 54566568 - 54566535
Alignment:
Q  385 ttacagggggcaaaaccaaaagtgacctatatta 418  Q
    ||||||||| ||||||||||||||||||||||||    
T  54566568 ttacaggggacaaaaccaaaagtgacctatatta 54566535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 4e-22; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 61 - 180
Target Start/End: Original strand, 22252948 - 22253067
Alignment:
Q  61 aggaagtggtgttgatgttgaaggagagattgaggtttttggtttaagaataatgnnnnnnntgactattaaagggatgaagatgaagaacatgttgttg 160  Q
    |||||||| ||||||| |||||||||| |||||| || |||||||||||||||||       ||| ||||||| |||||||||||| ||| |||||||||    
T  22252948 aggaagtgttgttgatattgaaggagatattgagtttgttggtttaagaataatgaagaaaatgaatattaaatggatgaagatgatgaagatgttgttg 22253047  T
Q  161 gtgatgatgaagatcttatg 180  Q
    ||||  ||||||||||||||    
T  22253048 gtgaccatgaagatcttatg 22253067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 269 - 439
Target Start/End: Original strand, 22253161 - 22253328
Alignment:
Q  269 gtaatcaaaaaatgctgagtcaacatgccatatcagcgaatctgatgagttggatgggtcagggtctatttctgaaaaatctttattttacatgaacgga 368  Q
    ||||| |||||||||||||||||| ||||| |||||||||||||||||||   |||||||| ||||||||| || | ||||||||||||||| | |||||    
T  22253161 gtaataaaaaaatgctgagtcaacgtgccacatcagcgaatctgatgagtcacatgggtca-ggtctatttttgcagaatctttattttacaaggacgga 22253259  T
Q  369 atcttnnnnnnntattttacagggggcaaaaccaaaagtgacctatattataggaagtaaaacattattaa 439  Q
    ||| |       || |||||||||||||||| | |||||| |||||||||  ||  |||||||||||||||    
T  22253260 atc-taaaaaaata-tttacagggggcaaaatcgaaagtggcctatattaatgggggtaaaacattattaa 22253328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 301 - 372
Target Start/End: Complemental strand, 21939262 - 21939191
Alignment:
Q  301 tcagcgaatctgatgagttggatgggtcagggtctatttctgaaaaatctttattttacatgaacggaatct 372  Q
    |||||||||||||||||| | ||||||||||||||||||||||| ||||| ||||||||| | |||||||||    
T  21939262 tcagcgaatctgatgagtcgcatgggtcagggtctatttctgaagaatctatattttacaaggacggaatct 21939191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 383 - 418
Target Start/End: Original strand, 14328644 - 14328679
Alignment:
Q  383 ttttacagggggcaaaaccaaaagtgacctatatta 418  Q
    ||||||||||||||||||||||||||||||||||||    
T  14328644 ttttacagggggcaaaaccaaaagtgacctatatta 14328679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 383 - 418
Target Start/End: Original strand, 14421654 - 14421689
Alignment:
Q  383 ttttacagggggcaaaaccaaaagtgacctatatta 418  Q
    ||||||||||||||||||||||||||||||||||||    
T  14421654 ttttacagggggcaaaaccaaaagtgacctatatta 14421689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 383 - 418
Target Start/End: Complemental strand, 2741607 - 2741572
Alignment:
Q  383 ttttacagggggcaaaaccaaaagtgacctatatta 418  Q
    ||||||||||||||||||||||||||| ||||||||    
T  2741607 ttttacagggggcaaaaccaaaagtgatctatatta 2741572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 383 - 418
Target Start/End: Complemental strand, 14327428 - 14327393
Alignment:
Q  383 ttttacagggggcaaaaccaaaagtgacctatatta 418  Q
    |||||||||||||||||||||||||||| |||||||    
T  14327428 ttttacagggggcaaaaccaaaagtgacgtatatta 14327393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 383 - 418
Target Start/End: Complemental strand, 14420438 - 14420403
Alignment:
Q  383 ttttacagggggcaaaaccaaaagtgacctatatta 418  Q
    |||||||||||||||||||||||||||| |||||||    
T  14420438 ttttacagggggcaaaaccaaaagtgacgtatatta 14420403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 383 - 418
Target Start/End: Complemental strand, 24234389 - 24234354
Alignment:
Q  383 ttttacagggggcaaaaccaaaagtgacctatatta 418  Q
    |||||||||||||||||||||||||| |||||||||    
T  24234389 ttttacagggggcaaaaccaaaagtgtcctatatta 24234354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 383 - 418
Target Start/End: Original strand, 24235628 - 24235663
Alignment:
Q  383 ttttacagggggcaaaaccaaaagtgacctatatta 418  Q
    |||||||||||||||||||||||||| |||||||||    
T  24235628 ttttacagggggcaaaaccaaaagtgccctatatta 24235663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 384 - 418
Target Start/End: Complemental strand, 3062249 - 3062215
Alignment:
Q  384 tttacagggggcaaaaccaaaagtgacctatatta 418  Q
    ||||||| |||||||||||||||||||||||||||    
T  3062249 tttacagtgggcaaaaccaaaagtgacctatatta 3062215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 384 - 418
Target Start/End: Complemental strand, 22056541 - 22056507
Alignment:
Q  384 tttacagggggcaaaaccaaaagtgacctatatta 418  Q
    ||||||||||||||||||||||||| |||||||||    
T  22056541 tttacagggggcaaaaccaaaagtgccctatatta 22056507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 384 - 418
Target Start/End: Original strand, 22058277 - 22058311
Alignment:
Q  384 tttacagggggcaaaaccaaaagtgacctatatta 418  Q
    ||||||||||||||||||||||||| |||||||||    
T  22058277 tttacagggggcaaaaccaaaagtgccctatatta 22058311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 381 - 418
Target Start/End: Original strand, 308554 - 308591
Alignment:
Q  381 tattttacagggggcaaaaccaaaagtgacctatatta 418  Q
    |||||||||||||| |||||||||| ||||||||||||    
T  308554 tattttacaggggggaaaaccaaaaatgacctatatta 308591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 381 - 418
Target Start/End: Original strand, 21226954 - 21226991
Alignment:
Q  381 tattttacagggggcaaaaccaaaagtgacctatatta 418  Q
    |||||||||||||| |||||||||| ||||||||||||    
T  21226954 tattttacaggggggaaaaccaaaaatgacctatatta 21226991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 381 - 418
Target Start/End: Original strand, 24602639 - 24602676
Alignment:
Q  381 tattttacagggggcaaaaccaaaagtgacctatatta 418  Q
    |||||||||||||| |||||||||| ||||||||||||    
T  24602639 tattttacaggggggaaaaccaaaaatgacctatatta 24602676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 381 - 418
Target Start/End: Original strand, 29239697 - 29239734
Alignment:
Q  381 tattttacagggggcaaaaccaaaagtgacctatatta 418  Q
    |||||||||||||| |||||||||| ||||||||||||    
T  29239697 tattttacagggggaaaaaccaaaaatgacctatatta 29239734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 381 - 418
Target Start/End: Original strand, 31733281 - 31733318
Alignment:
Q  381 tattttacagggggcaaaaccaaaagtgacctatatta 418  Q
    |||||||||||||| |||||||||| ||||||||||||    
T  31733281 tattttacaggggggaaaaccaaaaatgacctatatta 31733318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 384 - 429
Target Start/End: Complemental strand, 34762240 - 34762195
Alignment:
Q  384 tttacagggggcaaaaccaaaagtgacctatattataggaagtaaa 429  Q
    ||||||||| ||||||||||||||| ||||||||| |||| |||||    
T  34762240 tttacagggagcaaaaccaaaagtgccctatattacaggaggtaaa 34762195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 6e-21; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 560 - 628
Target Start/End: Complemental strand, 39301042 - 39300974
Alignment:
Q  560 taacatttttccattttacaagctaggcaatgttaacatgaaacattggaaaattgtaaaatatagaag 628  Q
    ||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||    
T  39301042 taacattttacccttttacaagttaggcaatgttaacatgaaacattggaaaattgtaaaataaagaag 39300974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 385 - 422
Target Start/End: Original strand, 51164020 - 51164057
Alignment:
Q  385 ttacagggggcaaaaccaaaagtgacctatattatagg 422  Q
    ||||||||||||||||||||||||||||||||||||||    
T  51164020 ttacagggggcaaaaccaaaagtgacctatattatagg 51164057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 272 - 360
Target Start/End: Complemental strand, 46633600 - 46633513
Alignment:
Q  272 atcaaaaaatgctgagtcaacatgccatatcagcgaatctgatgagttggatgggtcagggtctatttctgaaaaatctttattttaca 360  Q
    ||||||||||| ||| |  |||||||| ||||||||||||| |||||  ||| ||||| | |||||||||||| |||||||||||||||    
T  46633600 atcaaaaaatgttgactttacatgccacatcagcgaatctgctgagtcagataggtcatg-tctatttctgaagaatctttattttaca 46633513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 383 - 418
Target Start/End: Original strand, 34027192 - 34027227
Alignment:
Q  383 ttttacagggggcaaaaccaaaagtgacctatatta 418  Q
    ||||||||||||||||||||||||||||||||||||    
T  34027192 ttttacagggggcaaaaccaaaagtgacctatatta 34027227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 383 - 423
Target Start/End: Original strand, 4432985 - 4433025
Alignment:
Q  383 ttttacagggggcaaaaccaaaagtgacctatattatagga 423  Q
    ||||||||||||||||||||||||||| |||||||| ||||    
T  4432985 ttttacagggggcaaaaccaaaagtgatctatattacagga 4433025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 382 - 418
Target Start/End: Original strand, 12566935 - 12566971
Alignment:
Q  382 attttacagggggcaaaaccaaaagtgacctatatta 418  Q
    ||||||||||||||||||||||||||| |||||||||    
T  12566935 attttacagggggcaaaaccaaaagtgccctatatta 12566971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 383 - 439
Target Start/End: Complemental strand, 24700351 - 24700295
Alignment:
Q  383 ttttacagggggcaaaaccaaaagtgacctatattataggaagtaaaacattattaa 439  Q
    |||||||||||| ||||||||||||||||||||||  |||| ||||||  |||||||    
T  24700351 ttttacagggggtaaaaccaaaagtgacctatattgcaggaggtaaaaacttattaa 24700295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 382 - 418
Target Start/End: Original strand, 34741390 - 34741426
Alignment:
Q  382 attttacagggggcaaaaccaaaagtgacctatatta 418  Q
    ||||||||||||||||||||||||||| |||||||||    
T  34741390 attttacagggggcaaaaccaaaagtgccctatatta 34741426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 383 - 418
Target Start/End: Original strand, 9136402 - 9136437
Alignment:
Q  383 ttttacagggggcaaaaccaaaagtgacctatatta 418  Q
    ||||||||||||||||||||||||||| ||||||||    
T  9136402 ttttacagggggcaaaaccaaaagtgatctatatta 9136437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 383 - 418
Target Start/End: Original strand, 44199852 - 44199887
Alignment:
Q  383 ttttacagggggcaaaaccaaaagtgacctatatta 418  Q
    |||||||||||||||||||||||||||| |||||||    
T  44199852 ttttacagggggcaaaaccaaaagtgacgtatatta 44199887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 383 - 418
Target Start/End: Original strand, 50881420 - 50881455
Alignment:
Q  383 ttttacagggggcaaaaccaaaagtgacctatatta 418  Q
    |||||||||||||||||||||||||| |||||||||    
T  50881420 ttttacagggggcaaaaccaaaagtggcctatatta 50881455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 383 - 422
Target Start/End: Complemental strand, 51162137 - 51162098
Alignment:
Q  383 ttttacagggggcaaaaccaaaagtgacctatattatagg 422  Q
    ||||| ||||||||||| ||||||||||||||||||||||    
T  51162137 ttttagagggggcaaaatcaaaagtgacctatattatagg 51162098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 383 - 417
Target Start/End: Complemental strand, 20613025 - 20612991
Alignment:
Q  383 ttttacagggggcaaaaccaaaagtgacctatatt 417  Q
    |||||||||||| ||||||||||||||||||||||    
T  20613025 ttttacaggggggaaaaccaaaagtgacctatatt 20612991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 396 - 430
Target Start/End: Original strand, 41332749 - 41332783
Alignment:
Q  396 aaaaccaaaagtgacctatattataggaagtaaaa 430  Q
    |||||||||||||||||||||||||||| ||||||    
T  41332749 aaaaccaaaagtgacctatattataggaggtaaaa 41332783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 381 - 422
Target Start/End: Complemental strand, 30966673 - 30966632
Alignment:
Q  381 tattttacagggggcaaaaccaaaagtgacctatattatagg 422  Q
    |||||||||||||| ||||| |||| ||||||||||||||||    
T  30966673 tattttacaggggggaaaacaaaaaatgacctatattatagg 30966632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 381 - 422
Target Start/End: Complemental strand, 35370215 - 35370174
Alignment:
Q  381 tattttacagggggcaaaaccaaaagtgacctatattatagg 422  Q
    |||||||||||||| ||||| |||| ||||||||||||||||    
T  35370215 tattttacaggggggaaaacaaaaaatgacctatattatagg 35370174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 385 - 418
Target Start/End: Complemental strand, 54554440 - 54554407
Alignment:
Q  385 ttacagggggcaaaaccaaaagtgacctatatta 418  Q
    |||||||||||||||||||||||| |||||||||    
T  54554440 ttacagggggcaaaaccaaaagtgccctatatta 54554407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 301 - 418
Target Start/End: Original strand, 9768220 - 9768337
Alignment:
Q  301 tcagcgaatctgatgagttggatgggtcagggtctatttctgaaaaatctttattttacatgaacggaatcttnnnnnnntattttacagggggcaaaac 400  Q
    |||| ||||||| |||||  ||||| ||||||||||||| |||| |||||| |||||||| | |||||||||        | ||||||||||| |||||     
T  9768220 tcagtgaatctggtgagtcagatggatcagggtctatttttgaagaatcttgattttacaaggacggaatctaaaagaatttttttacaggggacaaaat 9768319  T
Q  401 caaaagtgacctatatta 418  Q
    ||||||||||||||||||    
T  9768320 caaaagtgacctatatta 9768337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 383 - 418
Target Start/End: Complemental strand, 34901561 - 34901526
Alignment:
Q  383 ttttacagggggcaaaaccaaaagtgacctatatta 418  Q
    ||||||||||||||||||||||||||||||||||||    
T  34901561 ttttacagggggcaaaaccaaaagtgacctatatta 34901526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 383 - 418
Target Start/End: Complemental strand, 39513926 - 39513891
Alignment:
Q  383 ttttacagggggcaaaaccaaaagtgacctatatta 418  Q
    ||||||||||||||||||||||||||||||||||||    
T  39513926 ttttacagggggcaaaaccaaaagtgacctatatta 39513891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 381 - 439
Target Start/End: Complemental strand, 25653765 - 25653707
Alignment:
Q  381 tattttacagggggcaaaaccaaaagtgacctatattataggaagtaaaacattattaa 439  Q
    |||||||||||||| |||||||||| |||||||||||| |||  |||||||| ||||||    
T  25653765 tattttacaggggggaaaaccaaaaatgacctatattacagggggtaaaacactattaa 25653707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 381 - 418
Target Start/End: Original strand, 31343598 - 31343635
Alignment:
Q  381 tattttacagggggcaaaaccaaaagtgacctatatta 418  Q
    |||||||||||||| |||||||||||||||||||||||    
T  31343598 tattttacaggggggaaaaccaaaagtgacctatatta 31343635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 382 - 418
Target Start/End: Original strand, 27164655 - 27164691
Alignment:
Q  382 attttacagggggcaaaaccaaaagtgacctatatta 418  Q
    ||||||||||||||||||||||||||| |||||||||    
T  27164655 attttacagggggcaaaaccaaaagtgccctatatta 27164691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 384 - 415
Target Start/End: Original strand, 2270290 - 2270321
Alignment:
Q  384 tttacagggggcaaaaccaaaagtgacctata 415  Q
    ||||||||||||||||||||||||||||||||    
T  2270290 tttacagggggcaaaaccaaaagtgacctata 2270321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 382 - 417
Target Start/End: Complemental strand, 6819256 - 6819221
Alignment:
Q  382 attttacagggggcaaaaccaaaagtgacctatatt 417  Q
    ||||||||||||| ||||||||||||||||||||||    
T  6819256 attttacaggggggaaaaccaaaagtgacctatatt 6819221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 383 - 418
Target Start/End: Original strand, 31986226 - 31986261
Alignment:
Q  383 ttttacagggggcaaaaccaaaagtgacctatatta 418  Q
    |||||||||||||||||| |||||||||||||||||    
T  31986226 ttttacagggggcaaaactaaaagtgacctatatta 31986261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 383 - 418
Target Start/End: Complemental strand, 39808707 - 39808672
Alignment:
Q  383 ttttacagggggcaaaaccaaaagtgacctatatta 418  Q
    |||||||||||||||||||||||||| |||||||||    
T  39808707 ttttacagggggcaaaaccaaaagtgccctatatta 39808672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 383 - 418
Target Start/End: Original strand, 40702008 - 40702043
Alignment:
Q  383 ttttacagggggcaaaaccaaaagtgacctatatta 418  Q
    |||||||||||||||||| |||||||||||||||||    
T  40702008 ttttacagggggcaaaacgaaaagtgacctatatta 40702043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 381 - 439
Target Start/End: Complemental strand, 2873510 - 2873452
Alignment:
Q  381 tattttacagggggcaaaaccaaaagtgacctatattataggaagtaaaacattattaa 439  Q
    |||||||||| ||| |||||| ||| |||||||||||| |||  |||||||||||||||    
T  2873510 tattttacagagggtaaaaccgaaaatgacctatattacagggggtaaaacattattaa 2873452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 381 - 423
Target Start/End: Original strand, 22686973 - 22687015
Alignment:
Q  381 tattttacagggggcaaaaccaaaagtgacctatattatagga 423  Q
    |||||||||||||| |||||||||| |||| ||||||||||||    
T  22686973 tattttacaggggggaaaaccaaaaatgacatatattatagga 22687015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 384 - 418
Target Start/End: Original strand, 39810085 - 39810119
Alignment:
Q  384 tttacagggggcaaaaccaaaagtgacctatatta 418  Q
    ||||||||||||||||||||||||| |||||||||    
T  39810085 tttacagggggcaaaaccaaaagtgccctatatta 39810119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 381 - 418
Target Start/End: Original strand, 11424332 - 11424369
Alignment:
Q  381 tattttacagggggcaaaaccaaaagtgacctatatta 418  Q
    |||||||||||||| |||||||||| ||||||||||||    
T  11424332 tattttacaggggggaaaaccaaaaatgacctatatta 11424369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 381 - 418
Target Start/End: Original strand, 20076380 - 20076417
Alignment:
Q  381 tattttacagggggcaaaaccaaaagtgacctatatta 418  Q
    |||||||||||||| |||||||||| ||||||||||||    
T  20076380 tattttacaggggggaaaaccaaaaatgacctatatta 20076417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 389 - 418
Target Start/End: Complemental strand, 31985065 - 31985036
Alignment:
Q  389 agggggcaaaaccaaaagtgacctatatta 418  Q
    ||||||||||||||||||||||||||||||    
T  31985065 agggggcaaaaccaaaagtgacctatatta 31985036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 381 - 418
Target Start/End: Complemental strand, 37611336 - 37611299
Alignment:
Q  381 tattttacagggggcaaaaccaaaagtgacctatatta 418  Q
    |||||||||||||| |||||||||| ||||||||||||    
T  37611336 tattttacagggggaaaaaccaaaaatgacctatatta 37611299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 384 - 429
Target Start/End: Original strand, 39515121 - 39515166
Alignment:
Q  384 tttacagggggcaaaaccaaaagtgacctatattataggaagtaaa 429  Q
    |||||||||||  |||||||||||||||||||||| ||| ||||||    
T  39515121 tttacagggggtcaaaccaaaagtgacctatattacagggagtaaa 39515166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 385 - 418
Target Start/End: Complemental strand, 42349019 - 42348986
Alignment:
Q  385 ttacagggggcaaaaccaaaagtgacctatatta 418  Q
    |||||||||||||||||||||||| |||||||||    
T  42349019 ttacagggggcaaaaccaaaagtgccctatatta 42348986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 294 - 360
Target Start/End: Original strand, 47839873 - 47839939
Alignment:
Q  294 tgccatatcagcgaatctgatgagttggatgggtcagggtctatttctgaaaaatctttattttaca 360  Q
    ||||| |||||||||||||||||||   ||||||||||| ||||||||||| |||||| ||||||||    
T  47839873 tgccacatcagcgaatctgatgagtcatatgggtcagggcctatttctgaagaatcttgattttaca 47839939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 383 - 418
Target Start/End: Original strand, 33667630 - 33667665
Alignment:
Q  383 ttttacagggggcaaaaccaaaagtgacctatatta 418  Q
    ||||||||||||||||||||||||||||||||||||    
T  33667630 ttttacagggggcaaaaccaaaagtgacctatatta 33667665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 384 - 418
Target Start/End: Complemental strand, 1825352 - 1825318
Alignment:
Q  384 tttacagggggcaaaaccaaaagtgacctatatta 418  Q
    |||||||||||||||||||||||||||||||||||    
T  1825352 tttacagggggcaaaaccaaaagtgacctatatta 1825318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 381 - 439
Target Start/End: Complemental strand, 38741536 - 38741478
Alignment:
Q  381 tattttacagggggcaaaaccaaaagtgacctatattataggaagtaaaacattattaa 439  Q
    |||||||||||||||||||||||||||| | ||||||| |||   ||||||||||||||    
T  38741536 tattttacagggggcaaaaccaaaagtgtcttatattacaggggttaaaacattattaa 38741478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 381 - 418
Target Start/End: Original strand, 24730199 - 24730236
Alignment:
Q  381 tattttacagggggcaaaaccaaaagtgacctatatta 418  Q
    |||||||||||||| |||||||||||||||||||||||    
T  24730199 tattttacaggggggaaaaccaaaagtgacctatatta 24730236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 382 - 418
Target Start/End: Original strand, 7780218 - 7780254
Alignment:
Q  382 attttacagggggcaaaaccaaaagtgacctatatta 418  Q
    |||||||||||||||||||||||||||| ||||||||    
T  7780218 attttacagggggcaaaaccaaaagtgatctatatta 7780254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 382 - 418
Target Start/End: Complemental strand, 14625430 - 14625394
Alignment:
Q  382 attttacagggggcaaaaccaaaagtgacctatatta 418  Q
    ||||||||||||||||||||||||||| |||||||||    
T  14625430 attttacagggggcaaaaccaaaagtgtcctatatta 14625394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 381 - 432
Target Start/End: Original strand, 6607404 - 6607455
Alignment:
Q  381 tattttacagggggcaaaaccaaaagtgacctatattataggaagtaaaaca 432  Q
    |||||||||||||| |||||||||| |||| ||||||| |||| ||||||||    
T  6607404 tattttacaggggggaaaaccaaaaatgacatatattacaggaggtaaaaca 6607455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 385 - 432
Target Start/End: Complemental strand, 12277245 - 12277198
Alignment:
Q  385 ttacagggggcaaaaccaaaagtgacctatattataggaagtaaaaca 432  Q
    |||||||||| |||||||||| |||||||||||| |||| ||||||||    
T  12277245 ttacaggggggaaaaccaaaaatgacctatattacaggaggtaaaaca 12277198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 383 - 422
Target Start/End: Complemental strand, 24545516 - 24545477
Alignment:
Q  383 ttttacagggggcaaaaccaaaagtgacctatattatagg 422  Q
    |||| |||| ||||||||||||||||||||||||||||||    
T  24545516 tttttcaggaggcaaaaccaaaagtgacctatattatagg 24545477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 383 - 418
Target Start/End: Complemental strand, 26095873 - 26095838
Alignment:
Q  383 ttttacagggggcaaaaccaaaagtgacctatatta 418  Q
    |||||||||||||||||||| |||||||||||||||    
T  26095873 ttttacagggggcaaaaccataagtgacctatatta 26095838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 383 - 418
Target Start/End: Complemental strand, 33934697 - 33934662
Alignment:
Q  383 ttttacagggggcaaaaccaaaagtgacctatatta 418  Q
    ||||||||||||||||||||||||||| ||||||||    
T  33934697 ttttacagggggcaaaaccaaaagtgatctatatta 33934662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 383 - 418
Target Start/End: Original strand, 47146366 - 47146401
Alignment:
Q  383 ttttacagggggcaaaaccaaaagtgacctatatta 418  Q
    |||||||||| |||||||||||||||||||||||||    
T  47146366 ttttacagggagcaaaaccaaaagtgacctatatta 47146401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 384 - 418
Target Start/End: Original strand, 1826433 - 1826467
Alignment:
Q  384 tttacagggggcaaaaccaaaagtgacctatatta 418  Q
    |||||||||||||||| ||||||||||||||||||    
T  1826433 tttacagggggcaaaatcaaaagtgacctatatta 1826467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 381 - 439
Target Start/End: Original strand, 4488707 - 4488765
Alignment:
Q  381 tattttacagggggcaaaaccaaaagtgacctatattataggaagtaaaacattattaa 439  Q
    ||||||| || |||||||||||||||||  ||||||||||||  |||||||| ||||||    
T  4488707 tattttaaagagggcaaaaccaaaagtgttctatattatagggggtaaaacaatattaa 4488765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 384 - 418
Target Start/End: Original strand, 26097026 - 26097060
Alignment:
Q  384 tttacagggggcaaaaccaaaagtgacctatatta 418  Q
    |||||||| ||||||||||||||||||||||||||    
T  26097026 tttacaggaggcaaaaccaaaagtgacctatatta 26097060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 384 - 429
Target Start/End: Original strand, 6225366 - 6225410
Alignment:
Q  384 tttacagggggcaaaaccaaaagtgacctatattataggaagtaaa 429  Q
    ||||||||||| ||||||||||||||||||||||  ||||||||||    
T  6225366 tttacaggggg-aaaaccaaaagtgacctatattgcaggaagtaaa 6225410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 381 - 418
Target Start/End: Original strand, 15961737 - 15961774
Alignment:
Q  381 tattttacagggggcaaaaccaaaagtgacctatatta 418  Q
    |||||||||||||| |||||||||| ||||||||||||    
T  15961737 tattttacaggggggaaaaccaaaaatgacctatatta 15961774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 385 - 418
Target Start/End: Complemental strand, 16785779 - 16785746
Alignment:
Q  385 ttacagggggcaaaaccaaaagtgacctatatta 418  Q
    ||||||||||||||||||||||||||||| ||||    
T  16785779 ttacagggggcaaaaccaaaagtgacctacatta 16785746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 383 - 416
Target Start/End: Original strand, 31838805 - 31838838
Alignment:
Q  383 ttttacagggggcaaaaccaaaagtgacctatat 416  Q
    |||||||| |||||||||||||||||||||||||    
T  31838805 ttttacagagggcaaaaccaaaagtgacctatat 31838838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 384 - 417
Target Start/End: Original strand, 49201384 - 49201417
Alignment:
Q  384 tttacagggggcaaaaccaaaagtgacctatatt 417  Q
    ||||||||||| ||||||||||||||||||||||    
T  49201384 tttacaggggggaaaaccaaaagtgacctatatt 49201417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 381 - 418
Target Start/End: Original strand, 50721922 - 50721959
Alignment:
Q  381 tattttacagggggcaaaaccaaaagtgacctatatta 418  Q
    |||||||||||||| |||||||||| ||||||||||||    
T  50721922 tattttacaggggggaaaaccaaaaatgacctatatta 50721959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 382 - 418
Target Start/End: Complemental strand, 1589446 - 1589410
Alignment:
Q  382 attttacagggggcaaaaccaaaagtgacctatatta 418  Q
    |||||||||||||||||||||||||||||||||||||    
T  1589446 attttacagggggcaaaaccaaaagtgacctatatta 1589410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 381 - 439
Target Start/End: Original strand, 42509034 - 42509092
Alignment:
Q  381 tattttacagggggcaaaaccaaaagtgacctatattataggaagtaaaacattattaa 439  Q
    |||||||||||||||||||||||||||| ||||||||| ||   |||||||| ||||||    
T  42509034 tattttacagggggcaaaaccaaaagtgccctatattacagagggtaaaacactattaa 42509092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 389 - 422
Target Start/End: Original strand, 21237349 - 21237382
Alignment:
Q  389 agggggcaaaaccaaaagtgacctatattatagg 422  Q
    ||||||||||||||||||||||||||||||||||    
T  21237349 agggggcaaaaccaaaagtgacctatattatagg 21237382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 383 - 423
Target Start/End: Original strand, 9554257 - 9554297
Alignment:
Q  383 ttttacagggggcaaaaccaaaagtgacctatattatagga 423  Q
    |||||||||||||||||||||||||| ||||||||| ||||    
T  9554257 ttttacagggggcaaaaccaaaagtgccctatattacagga 9554297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 382 - 418
Target Start/End: Complemental strand, 17763397 - 17763361
Alignment:
Q  382 attttacagggggcaaaaccaaaagtgacctatatta 418  Q
    ||||||||||||||||||||||||||| |||||||||    
T  17763397 attttacagggggcaaaaccaaaagtgtcctatatta 17763361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 382 - 418
Target Start/End: Complemental strand, 48168910 - 48168874
Alignment:
Q  382 attttacagggggcaaaaccaaaagtgacctatatta 418  Q
    ||||||||||||||||||||||||||| |||||||||    
T  48168910 attttacagggggcaaaaccaaaagtgccctatatta 48168874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 383 - 418
Target Start/End: Original strand, 5219034 - 5219069
Alignment:
Q  383 ttttacagggggcaaaaccaaaagtgacctatatta 418  Q
    ||||||||||||||||| ||||||||||||||||||    
T  5219034 ttttacagggggcaaaatcaaaagtgacctatatta 5219069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 383 - 418
Target Start/End: Original strand, 17764697 - 17764732
Alignment:
Q  383 ttttacagggggcaaaaccaaaagtgacctatatta 418  Q
    |||||||||||||||||||||||||| |||||||||    
T  17764697 ttttacagggggcaaaaccaaaagtgccctatatta 17764732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 381 - 432
Target Start/End: Complemental strand, 19336104 - 19336053
Alignment:
Q  381 tattttacagggggcaaaaccaaaagtgacctatattataggaagtaaaaca 432  Q
    |||||||||||||| |||||||||| |||||||||||| |||  ||||||||    
T  19336104 tattttacaggggggaaaaccaaaaatgacctatattacagggggtaaaaca 19336053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 383 - 418
Target Start/End: Original strand, 45865649 - 45865684
Alignment:
Q  383 ttttacagggggcaaaaccaaaagtgacctatatta 418  Q
    |||||||||||| |||||||||||||||||||||||    
T  45865649 ttttacagggggtaaaaccaaaagtgacctatatta 45865684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 381 - 439
Target Start/End: Original strand, 21444179 - 21444237
Alignment:
Q  381 tattttacagggggcaaaaccaaaagtgacctatattataggaagtaaaacattattaa 439  Q
    |||||||||||||| |||||| ||| |||||||||||| |||  |||||||| ||||||    
T  21444179 tattttacagggggtaaaaccgaaaatgacctatattacagggggtaaaacactattaa 21444237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 382 - 432
Target Start/End: Complemental strand, 24757421 - 24757371
Alignment:
Q  382 attttacagggggcaaaaccaaaagtgacctatattataggaagtaaaaca 432  Q
    ||||||||||||| |||||||||| |||||||||||| || | ||||||||    
T  24757421 attttacagggggaaaaaccaaaaatgacctatattacagaaggtaaaaca 24757371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 295 - 418
Target Start/End: Original strand, 47161666 - 47161789
Alignment:
Q  295 gccatatcagcgaatctgatgagttggatgggtcagggtctatttctgaaaaatctttattttacatgaacggaatcttnnnnnnntattttacaggggg 394  Q
    |||| ||||| |||| ||||||||  ||||| ||||||||||||| |||| |||||| |||||||| | | |||||||         | |||| ||| ||    
T  47161666 gccacatcagtgaatatgatgagtcagatggatcagggtctatttttgaagaatcttgattttacaaggaaggaatctaaaaaaaaaaatttataggagg 47161765  T
Q  395 caaaaccaaaagtgacctatatta 418  Q
    ||||| ||||||||||||||||||    
T  47161766 caaaatcaaaagtgacctatatta 47161789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 381 - 418
Target Start/End: Original strand, 10659956 - 10659993
Alignment:
Q  381 tattttacagggggcaaaaccaaaagtgacctatatta 418  Q
    |||||||||||||| |||||||||| ||||||||||||    
T  10659956 tattttacaggggggaaaaccaaaaatgacctatatta 10659993  T

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Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 381 - 422
Target Start/End: Original strand, 48848136 - 48848177
Alignment:
Q  381 tattttacagggggcaaaaccaaaagtgacctatattatagg 422  Q
    |||||||||||||| ||||| |||| ||||||||||||||||    
T  48848136 tattttacaggggggaaaacaaaaaatgacctatattatagg 48848177  T

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Target: scaffold0136 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 383 - 422
Target Start/End: Complemental strand, 35658 - 35619
Alignment:
Q  383 ttttacagggggcaaaaccaaaagtgacctatattatagg 422  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  35658 ttttacagggggcaaaaccaaaagtgacctatattttagg 35619  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000008; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 383 - 418
Target Start/End: Original strand, 22468222 - 22468257
Alignment:
Q  383 ttttacagggggcaaaaccaaaagtgacctatatta 418  Q
    ||||||||||||||||||||||||||||||||||||    
T  22468222 ttttacagggggcaaaaccaaaagtgacctatatta 22468257  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 383 - 418
Target Start/End: Original strand, 22474443 - 22474478
Alignment:
Q  383 ttttacagggggcaaaaccaaaagtgacctatatta 418  Q
    ||||||||||||||||||||||||||||||||||||    
T  22474443 ttttacagggggcaaaaccaaaagtgacctatatta 22474478  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 385 - 439
Target Start/End: Original strand, 9468520 - 9468574
Alignment:
Q  385 ttacagggggcaaaaccaaaagtgacctatattataggaagtaaaacattattaa 439  Q
    ||||||||||||||||| ||| ||||||||||||||||  |||||||| ||||||    
T  9468520 ttacagggggcaaaaccgaaaatgacctatattatagggtgtaaaacactattaa 9468574  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 383 - 429
Target Start/End: Original strand, 44242353 - 44242399
Alignment:
Q  383 ttttacagggggcaaaaccaaaagtgacctatattataggaagtaaa 429  Q
    ||||||||||||||||||||||||||| |||||||| |||| |||||    
T  44242353 ttttacagggggcaaaaccaaaagtgatctatattacaggaggtaaa 44242399  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 381 - 418
Target Start/End: Complemental strand, 7576387 - 7576350
Alignment:
Q  381 tattttacagggggcaaaaccaaaagtgacctatatta 418  Q
    |||||||||||||||||||||||||||| |||||||||    
T  7576387 tattttacagggggcaaaaccaaaagtgccctatatta 7576350  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 382 - 418
Target Start/End: Complemental strand, 1902991 - 1902955
Alignment:
Q  382 attttacagggggcaaaaccaaaagtgacctatatta 418  Q
    ||||||||||||||||||||||||||| |||||||||    
T  1902991 attttacagggggcaaaaccaaaagtgccctatatta 1902955  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 381 - 429
Target Start/End: Complemental strand, 23045228 - 23045180
Alignment:
Q  381 tattttacagggggcaaaaccaaaagtgacctatattataggaagtaaa 429  Q
    |||||||||||||| |||||||||| |||||||||||| |||| |||||    
T  23045228 tattttacaggggggaaaaccaaaaatgacctatattacaggaggtaaa 23045180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 383 - 418
Target Start/End: Complemental strand, 22467041 - 22467006
Alignment:
Q  383 ttttacagggggcaaaaccaaaagtgacctatatta 418  Q
    ||||||||||| ||||||||||||||||||||||||    
T  22467041 ttttacaggggacaaaaccaaaagtgacctatatta 22467006  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 383 - 418
Target Start/End: Original strand, 28462491 - 28462526
Alignment:
Q  383 ttttacagggggcaaaaccaaaagtgacctatatta 418  Q
    |||||||||| |||||||||||||||||||||||||    
T  28462491 ttttacagggtgcaaaaccaaaagtgacctatatta 28462526  T

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Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 382 - 429
Target Start/End: Complemental strand, 30371445 - 30371398
Alignment:
Q  382 attttacagggggcaaaaccaaaagtgacctatattataggaagtaaa 429  Q
    ||||||||||||| |||||||||| |||||||||||| ||| ||||||    
T  30371445 attttacaggggggaaaaccaaaaatgacctatattacagggagtaaa 30371398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 381 - 439
Target Start/End: Complemental strand, 874414 - 874356
Alignment:
Q  381 tattttacagggggcaaaaccaaaagtgacctatattataggaagtaaaacattattaa 439  Q
    ||||||||| |||| |||||| ||| |||||||||||||| |  |||||||||||||||    
T  874414 tattttacaaggggtaaaaccgaaaatgacctatattataaggggtaaaacattattaa 874356  T

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Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 383 - 429
Target Start/End: Complemental strand, 44241156 - 44241110
Alignment:
Q  383 ttttacagggggcaaaaccaaaagtgacctatattataggaagtaaa 429  Q
    ||||||||||| ||||||||||| |||||||||||| ||| ||||||    
T  44241156 ttttacaggggacaaaaccaaaaatgacctatattacagggagtaaa 44241110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 384 - 418
Target Start/End: Complemental strand, 44366926 - 44366892
Alignment:
Q  384 tttacagggggcaaaaccaaaagtgacctatatta 418  Q
    ||||||||||||||||||||||||| |||||||||    
T  44366926 tttacagggggcaaaaccaaaagtgccctatatta 44366892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 385 - 418
Target Start/End: Original strand, 15749008 - 15749041
Alignment:
Q  385 ttacagggggcaaaaccaaaagtgacctatatta 418  Q
    |||||||||||||||||||||||||| |||||||    
T  15749008 ttacagggggcaaaaccaaaagtgacatatatta 15749041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 385 - 418
Target Start/End: Complemental strand, 16670556 - 16670523
Alignment:
Q  385 ttacagggggcaaaaccaaaagtgacctatatta 418  Q
    |||||||||||||||||||||||| |||||||||    
T  16670556 ttacagggggcaaaaccaaaagtgccctatatta 16670523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 385 - 418
Target Start/End: Complemental strand, 23834639 - 23834606
Alignment:
Q  385 ttacagggggcaaaaccaaaagtgacctatatta 418  Q
    |||||||||||||||||||||||| |||||||||    
T  23834639 ttacagggggcaaaaccaaaagtgccctatatta 23834606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 381 - 418
Target Start/End: Complemental strand, 31108408 - 31108371
Alignment:
Q  381 tattttacagggggcaaaaccaaaagtgacctatatta 418  Q
    |||||||||||||| |||||||||| ||||||||||||    
T  31108408 tattttacaggggggaaaaccaaaaatgacctatatta 31108371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 381 - 418
Target Start/End: Complemental strand, 34831553 - 34831516
Alignment:
Q  381 tattttacagggggcaaaaccaaaagtgacctatatta 418  Q
    ||||||||||||||||||||||||| |||| |||||||    
T  34831553 tattttacagggggcaaaaccaaaaatgacatatatta 34831516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 381 - 418
Target Start/End: Original strand, 43015197 - 43015234
Alignment:
Q  381 tattttacagggggcaaaaccaaaagtgacctatatta 418  Q
    ||||||||||||| ||||||||||| ||||||||||||    
T  43015197 tattttacaggggacaaaaccaaaaatgacctatatta 43015234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0725 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0725
Description:

Target: scaffold0725; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 384 - 418
Target Start/End: Original strand, 4955 - 4989
Alignment:
Q  384 tttacagggggcaaaaccaaaagtgacctatatta 418  Q
    |||||||||||||||||||||||||||||||||||    
T  4955 tttacagggggcaaaaccaaaagtgacctatatta 4989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 383 - 418
Target Start/End: Original strand, 285 - 320
Alignment:
Q  383 ttttacagggggcaaaaccaaaagtgacctatatta 418  Q
    |||||||||||||||||||||||||| |||||||||    
T  285 ttttacagggggcaaaaccaaaagtgccctatatta 320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 383 - 418
Target Start/End: Original strand, 228584 - 228619
Alignment:
Q  383 ttttacagggggcaaaaccaaaagtgacctatatta 418  Q
    |||||||||||||||||| |||||||||||||||||    
T  228584 ttttacagggggcaaaactaaaagtgacctatatta 228619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 389 - 418
Target Start/End: Complemental strand, 227423 - 227394
Alignment:
Q  389 agggggcaaaaccaaaagtgacctatatta 418  Q
    ||||||||||||||||||||||||||||||    
T  227423 agggggcaaaaccaaaagtgacctatatta 227394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 381 - 418
Target Start/End: Original strand, 53518 - 53555
Alignment:
Q  381 tattttacagggggcaaaaccaaaagtgacctatatta 418  Q
    |||||||||||||| |||||||||| ||||||||||||    
T  53518 tattttacaggggggaaaaccaaaaatgacctatatta 53555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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