View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1607-INSERTION-6 (Length: 539)
Name: NF1607-INSERTION-6
Description: NF1607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1607-INSERTION-6 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 492; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 7 - 539
Target Start/End: Original strand, 2947019 - 2947551
Alignment:
| Q |
7 |
agctaactacattaccttttgagattctttgaagcaactagctttgaaaagatggaaagaaaatgagagagaaaaaatgctaaacgcacctcccatctag |
106 |
Q |
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| T |
2947019 |
agctaactacattactttttgagattctttgaagcaactaactttgaaaagatggaaagaaaatgagagaaaaaaaatgctaaacgcacctcccatctag |
2947118 |
T |
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| Q |
107 |
atgggttgaagacaagaggatcctgatatttcgcagggtttaaatgtacagctgggggacacaccatgattgcccatcctgctggtatggtatatcctgc |
206 |
Q |
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| T |
2947119 |
atgggttgaagacaagaggatcctgatatttcgcagggtttaaatgtacagctgggggacacaccatgattgcccatcctgctggtatggtatatcctgc |
2947218 |
T |
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| Q |
207 |
acgtgttcattattgaagacaaaatgaggtcacattgtcaaatatagtgtgcttttccactattacttaaacatcaagttaccaatgcacttgaacattg |
306 |
Q |
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| T |
2947219 |
acgtgttcattattgaagacaaaatgaggtcacattgtcaaatatagtgtgcttttccactattacttaaacatcaagttaccaatgcacttgaacattg |
2947318 |
T |
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| Q |
307 |
aaatttgaaaatgttgtattattaaattagcaatcacatacccttaaaattaatttcccttagtgccttccggaagattcctggaactatatttgcaagt |
406 |
Q |
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| T |
2947319 |
aaatttgaaaattttgtattattaaattagcaatcacatacccttaaaattaatttcccttagtgccttccggaagattcctggaactatatttgcaagt |
2947418 |
T |
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| Q |
407 |
cttgcagtttcagttatgagctgtgcaaatcatcattcattgaatttcaaataagataaattaacacacaatgtgccacattaaaaatgaagaaannnnn |
506 |
Q |
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| T |
2947419 |
cttgcagtttcggttatgagctgtgcaaatcatcattcattgaatttcaaataagataaattaacacacaatgtgccacattaaaaatgaagaaattttt |
2947518 |
T |
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| Q |
507 |
nnaactaacctgaaatgtaaatgtcattgattt |
539 |
Q |
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| T |
2947519 |
ttaactaacctgaaatgtaaatgtcattgattt |
2947551 |
T |
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