View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1607-INSERTION-7 (Length: 749)
Name: NF1607-INSERTION-7
Description: NF1607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1607-INSERTION-7 |
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| [»] chr1 (4 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
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| [»] scaffold0702 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-126; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 479 - 749
Target Start/End: Complemental strand, 5478672 - 5478407
Alignment:
| Q |
479 |
taccactactgattcctagagtttactagggtctaccaaatgttaacaacttgaatcttactttcaaaaactacctacatgcataaataaaccttcctta |
578 |
Q |
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| T |
5478672 |
taccactactgattcctagagtttactagggtctaccaaatgttaacaacttgaatcttactttcaaaaactacctacatgcataaa----ccttact-a |
5478578 |
T |
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| Q |
579 |
aaattcttagtaatgcgggactcagctacaacttcaactgtaaatatttcatgtgaatcaaacttttcaaattgttagcgattgagcctgcttggatcac |
678 |
Q |
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| T |
5478577 |
aaattcttagtaatgcgggactctgctacaacttcaactgtaaatatttcatgtgaatcaaacttttcaaattgttagcgcttgagcctgcttggatcac |
5478478 |
T |
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| Q |
679 |
atctagacaaatagaaatgaggtgacggataatgttacgaaatgttcgtcgaggtggataaatacgtgtac |
749 |
Q |
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| T |
5478477 |
atctagacaaatagaaatgaggtgacggataatgtcacgaaatgttcgtcgaggtggataaatacgtgtac |
5478407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 195 - 291
Target Start/End: Complemental strand, 5478957 - 5478862
Alignment:
| Q |
195 |
ccctgttttcaaagcagagtacagataattaacactctattcccataagtttggaatgtggaaatcgttttatgttataaatgcaagagcctccatt |
291 |
Q |
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| T |
5478957 |
ccctgttttcaaagcagagtacagata-ttaacactctattcccataagtttggaatgtggaaatcgttttatgttataaatgcaagagcctccatt |
5478862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 8 - 134
Target Start/End: Complemental strand, 5479144 - 5479017
Alignment:
| Q |
8 |
ctgtaattattagtcgtttaagagggatagaaaatgtgaaataatagtagcaacatctgttttttcatttatctcttatggaaat-nnnnnnnnnctggt |
106 |
Q |
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| T |
5479144 |
ctgtaattattagttgtttaagagggatagaaaatgtgaaataatagtagcaacatctgttttttcatttatctcttatggaaataaaaaaaaaactggt |
5479045 |
T |
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| Q |
107 |
gacatacccccctaaaatactcgtgtac |
134 |
Q |
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| T |
5479044 |
gacatacccccctaaaatactcgtgtac |
5479017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 354 - 421
Target Start/End: Complemental strand, 5478798 - 5478730
Alignment:
| Q |
354 |
cagattcctagaggttattagggtctt-accaagttgatagattttgaatctcgcctacaagattagct |
421 |
Q |
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| T |
5478798 |
cagattcctagaggttattagggtctacaccaagttgatagattttgaatctcgcctacaagattagct |
5478730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 660 - 735
Target Start/End: Original strand, 163892 - 163967
Alignment:
| Q |
660 |
ttgagcctgcttggatcacatctagacaaatagaaatgaggtgacggataatgttacgaaatgttcgtcgaggtgg |
735 |
Q |
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| T |
163892 |
ttgagcccgcttggatcacatctagacaaatagaagtagggcgatgggcaatgtcacgaaatgttcgccgaggtgg |
163967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 660 - 735
Target Start/End: Complemental strand, 18343477 - 18343402
Alignment:
| Q |
660 |
ttgagcctgcttggatcacatctagacaaatagaaatgaggtgacggataatgttacgaaatgttcgtcgaggtgg |
735 |
Q |
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| T |
18343477 |
ttgagcccgcttggatcacatctagacaaatagaagcagggcgacgggcaatgtcacgaaatgttcgccgaggtgg |
18343402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0702 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0702
Description:
Target: scaffold0702; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 660 - 694
Target Start/End: Original strand, 6989 - 7023
Alignment:
| Q |
660 |
ttgagcctgcttggatcacatctagacaaatagaa |
694 |
Q |
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| T |
6989 |
ttgagcccgcttggatcacatctagacaaatagaa |
7023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 660 - 694
Target Start/End: Original strand, 35195074 - 35195108
Alignment:
| Q |
660 |
ttgagcctgcttggatcacatctagacaaatagaa |
694 |
Q |
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| T |
35195074 |
ttgagcccgcttggatcacatctagacaaatagaa |
35195108 |
T |
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