View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1607-INSERTION-8 (Length: 740)
Name: NF1607-INSERTION-8
Description: NF1607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1607-INSERTION-8 |
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Alignment Details
Target: chr2 (Bit Score: 641; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 641; E-Value: 0
Query Start/End: Original strand, 8 - 728
Target Start/End: Complemental strand, 3432561 - 3431856
Alignment:
| Q |
8 |
agttattgaagggattgtgtttgatacgaaagcatgtgtaaagtttgatgtgtttattaatgataaagataaggtggttaagccatttaatacagagttt |
107 |
Q |
| |
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| T |
3432561 |
agttattgaagggattgtgtttgatacgaaagcatgtgtaaagtttgatgtgtttattaatgataaagataaggtggttaagccatttaatacagagttt |
3432462 |
T |
|
| Q |
108 |
gctgggagctttgtgaatgtacctcattctttgcatgaacaaacaatgaagaatattaatagtagttgtagatttggattaacggacttgctggaagatt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3432461 |
gctgggagctttgtgaatgtacctcattctttgcatgaacaaacaatgaagaatattaatagtagttgtagatttggattaacggacttgctggaagatt |
3432362 |
T |
|
| Q |
208 |
tgggagttgatgatgatgacagtgttgtggttactttggttccaaggtacgggaaaggacttgttaaaatcagaaacattatgatagagcttgaaggttg |
307 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3432361 |
tgggagttgatgatgatgacagtgttgtggttactttggttccaaggtacgggaaaggacttgttaaaatcagaaacattatgatagagcttgaaggttg |
3432262 |
T |
|
| Q |
308 |
aaaatttgaaccacttgatatatatgtgtgtgtgtattagtttattttattttgtgaaggaggaccacactgatatatgtatgcatggtatgtatgtgca |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
3432261 |
aaaatttgaaccacttgatatatatgtgtgtgtgtattagtttattttattttgtgaaggaggaccacactgatatatgtatgcatggtatgtatgtgta |
3432162 |
T |
|
| Q |
408 |
tttcnnnnnnnnnnnnngaggtaaagtatatgtatttatattgcccgtgtgttgaccggtaaatatatacgtatttcttacagtaaaatacagtatatat |
507 |
Q |
| |
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||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3432161 |
ttt-----------tttgaggtaaagtatatgtatttatattgctcgtgtgttgaccggtaaatatatacgtatttcttacagtaaaatacagtatatat |
3432073 |
T |
|
| Q |
508 |
ttatgtgtgtgtatcttgtatttatattgattatttcatctgtgtaaatatggctttacatttgtataatttgaaaacatattcatatatatgtagcgtt |
607 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
3432072 |
ttatgtgtgtgtatcttgtatttatattgattatttcatctgtgtaaatatggctttacatttgtataatttgaaaacatattc----atatgtagcgtt |
3431977 |
T |
|
| Q |
608 |
gaatatattaaatcataccatgaattaaaatagtgtatcgactatatgtactccttcgtacctaatactttgatggttgtgtactagagctcgtatcaag |
707 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
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| T |
3431976 |
gaatatattaaatcataccatgaattaaaatagtgtatcgactatatgtactccttcgtacctaatactttgagggttgtgtactagaactcgtatcaag |
3431877 |
T |
|
| Q |
708 |
tagcgaagcgaattacgaacc |
728 |
Q |
| |
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||||||||||||||||||||| |
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| T |
3431876 |
tagcgaagcgaattacgaacc |
3431856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 12 - 323
Target Start/End: Complemental strand, 3426387 - 3426073
Alignment:
| Q |
12 |
attgaagggattgtgtttgatacgaaagcatgtgtaaagtttgatgtgtttattaatgataaagat---aaggtggttaagccatttaatacagagtttg |
108 |
Q |
| |
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||||||||||||| |||||||| || | |||| ||||||||||| || ||||||||| ||||| |||||| |||||||| ||||||| ||||||| |
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| T |
3426387 |
attgaagggattgagtttgataagagtttaggtgttaagtttgatgttttcattaatgatgaagatgataaggtgattaagccagttaatacggagtttg |
3426288 |
T |
|
| Q |
109 |
ctgggagctttgtgaatgtacctcattctttgcatgaacaaacaatgaagaatattaatagtagttgtagatttggattaacggacttgctggaagattt |
208 |
Q |
| |
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|||| ||||||||||||||||||||||||| ||||| || | || |||||| | ||||||| ||| || ||||||||||||| ||| |||||||||| |
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| T |
3426287 |
ctggaagctttgtgaatgtacctcattcttcccatgatcacaaaaagaagaagactaatagttgtttaagggttggattaacggatttgttggaagattt |
3426188 |
T |
|
| Q |
209 |
gggagttgatgatgatgacagtgttgtggttactttggttccaaggtacgggaaaggacttgttaaaatcagaaacattatgatagagcttgaaggttga |
308 |
Q |
| |
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||||| ||| |||||||| || ||||||||||||||||| |||||||| ||||||||| |||| ||||||||||| || | |||||||||||||| |||| |
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| T |
3426187 |
gggagctgaggatgatgatagcgttgtggttactttggtaccaaggtatgggaaaggaattgtcaaaatcagaaatatcaagatagagcttgaagattga |
3426088 |
T |
|
| Q |
309 |
aaatttgaaccactt |
323 |
Q |
| |
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|||||| ||||||| |
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| T |
3426087 |
aaatttctaccactt |
3426073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 166; Significance: 2e-88; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 438 - 723
Target Start/End: Original strand, 11913357 - 11913643
Alignment:
| Q |
438 |
tgtatttatattgcccgtgtgttgaccggtaaatatatacgtatttcttacagtaaaatacagtatatatttatgtgtgtgtatcttgtatttatattga |
537 |
Q |
| |
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|||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11913357 |
tgtatttatattgctcgtgtgttgaccagtaaatatatatgtatttcttacagtaaaatacagtatatatttatgtgtgtgtatcttgtatttatattga |
11913456 |
T |
|
| Q |
538 |
ttatttcatctgtgtaaatatggctttacatttgtataatttgaaaacatattcatatatatgtagcgttgaatatattaaatcataccatgaattaaaa |
637 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||| |||||||||||||| | || |||| |||||||||||||||||||| | || ||| |
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| T |
11913457 |
ttatttca---gtgtaaatatggctttacatttgtataatttaaaaacatattcata---aggtgccgtttaatatattaaatcataccataatttgaaa |
11913550 |
T |
|
| Q |
638 |
tagtgtatcgactat----atgtactccttcgtacc---taatactttgatggttgtgtactagagctcgtatcaagtagcgaagcgaattac |
723 |
Q |
| |
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||||| ||||||||| |||||||||||| |||| ||||||||||| ||||||||| |||||||||||||||| | ||||||||||||| |
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| T |
11913551 |
tagtgcatcgactatatgcatgtactccttcatacctaataatactttgagggttgtgtaatagagctcgtatcaaggaacgaagcgaattac |
11913643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 12 - 332
Target Start/End: Original strand, 11897907 - 11898230
Alignment:
| Q |
12 |
attgaagggattgtgtttgatacgaaagcatgtgtaaagtttgatgtgtttattaatgataaagat---aaggtggttaagccatttaatacagagtttg |
108 |
Q |
| |
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||||||||||||| |||||||| || | |||| ||||||||||| || ||||||||| ||||| |||| | |||||||| ||||||| ||||||| |
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| T |
11897907 |
attgaagggattgagtttgataagagtttaggtgttaagtttgatgttttcattaatgatgaagatgctaaggagattaagccagttaatacggagtttg |
11898006 |
T |
|
| Q |
109 |
ctgggagctttgtgaatgtacctcattctttgcatgaacaaacaatgaagaatattaatagtagttgtagatttggattaacggacttgctggaagattt |
208 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||||| || | || |||||| | |||||| ||| || ||||||||||||| ||| || ||||||| |
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| T |
11898007 |
ctggaagctttgtgaatgtacctcattcttcccatgatcacaaaaagaagaagactaatagctgtttaagggttggattaacggatttgttgaaagattt |
11898106 |
T |
|
| Q |
209 |
gggagttgatgatgatgacagtgttgtggttactttggttccaaggtacgggaaaggacttgttaaaatcagaaacattatgatagagcttgaaggttga |
308 |
Q |
| |
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||||| ||| |||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
11898107 |
gggagctgaggatgatgatagcattgtggttactttggttccaaggtacaggaaaggacttgttaaaatcacaaacattaagatagagcttgaaggttga |
11898206 |
T |
|
| Q |
309 |
aaatttgaaccacttgatatatat |
332 |
Q |
| |
|
||||||| |||||||||||||||| |
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|
| T |
11898207 |
aaatttggaccacttgatatatat |
11898230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 152 - 332
Target Start/End: Original strand, 11913093 - 11913272
Alignment:
| Q |
152 |
aatgaagaatattaatagtagttgtagatttggattaacggacttgctggaagatttgggagttgatgatgatgacagtgttgtggttactttggttcca |
251 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
11913093 |
aatgaagaatattaatagtagttgcagatttggattaacggacttgctggaagatttgggagctgacgatgatgacagtgttgtggttactttggttcca |
11913192 |
T |
|
| Q |
252 |
aggtacgggaaaggacttgttaaaatcagaaacattatgatagagcttgaaggttgaaaatttgaaccacttgatatatat |
332 |
Q |
| |
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|||| |||||||||||||||||||||| |||||||| | || |||||| |||||||| ||| |||||||||||||||| |
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|
| T |
11913193 |
tggtaagggaaaggacttgttaaaatcacaaacattaaca-agtccttgaaagttgaaaacttggaccacttgatatatat |
11913272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 11912983 - 11913066
Alignment:
| Q |
16 |
aagggattgtgtttgatacgaaagcatgtgtaaagtttgatgtgtttattaatgataaagataaggtggttaagccatttaatac |
100 |
Q |
| |
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||||||||| |||||||||||| | ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
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| T |
11912983 |
aagggattgagtttgatacgaacatacgtgtaaagtttgatgtgtttattaatgatgaa-ataaggtggttaagccatttaatac |
11913066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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