View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16070_high_1 (Length: 568)

Name: NF16070_high_1
Description: NF16070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16070_high_1
NF16070_high_1
[»] chr8 (3 HSPs)
chr8 (11-553)||(7406505-7407048)
chr8 (24-94)||(22998380-22998450)
chr8 (24-96)||(13104063-13104135)
[»] chr5 (8 HSPs)
chr5 (11-92)||(5325339-5325420)
chr5 (24-94)||(15030029-15030099)
chr5 (19-96)||(31253839-31253916)
chr5 (24-92)||(26228147-26228215)
chr5 (19-92)||(11077474-11077547)
chr5 (24-94)||(42478394-42478464)
chr5 (15-64)||(7660983-7661032)
chr5 (21-69)||(20128059-20128107)
[»] chr3 (11 HSPs)
chr3 (19-186)||(39950834-39951001)
chr3 (25-94)||(6473071-6473140)
chr3 (15-70)||(4611705-4611760)
chr3 (24-94)||(15819918-15819988)
chr3 (24-92)||(40475096-40475164)
chr3 (24-94)||(6473587-6473657)
chr3 (24-94)||(6512807-6512877)
chr3 (24-94)||(6748344-6748414)
chr3 (19-92)||(3330659-3330734)
chr3 (24-92)||(818172-818240)
chr3 (255-328)||(39951077-39951150)
[»] chr1 (9 HSPs)
chr1 (15-94)||(27572079-27572158)
chr1 (26-79)||(17888364-17888417)
chr1 (24-92)||(31038232-31038300)
chr1 (24-94)||(25646724-25646794)
chr1 (34-92)||(33473624-33473682)
chr1 (11-93)||(18467611-18467697)
chr1 (24-92)||(51995373-51995441)
chr1 (24-94)||(32907924-32907994)
chr1 (124-173)||(19050145-19050194)
[»] chr6 (4 HSPs)
chr6 (24-94)||(12522364-12522434)
chr6 (210-310)||(11715617-11715717)
chr6 (11-75)||(11715490-11715554)
chr6 (9-97)||(15641528-15641619)
[»] chr4 (11 HSPs)
chr4 (11-95)||(20808996-20809080)
chr4 (24-94)||(8016121-8016191)
chr4 (11-94)||(41908089-41908172)
chr4 (16-96)||(11351498-11351577)
chr4 (24-94)||(790755-790825)
chr4 (24-92)||(32105598-32105666)
chr4 (17-96)||(27007238-27007317)
chr4 (225-305)||(41907898-41907978)
chr4 (133-172)||(41908026-41908065)
chr4 (124-158)||(9394310-9394344)
chr4 (14-78)||(52245283-52245347)
[»] chr7 (10 HSPs)
chr7 (24-94)||(7194032-7194102)
chr7 (19-96)||(23846322-23846399)
chr7 (24-92)||(39605797-39605865)
chr7 (24-90)||(24688246-24688312)
chr7 (28-94)||(24056316-24056382)
chr7 (19-96)||(46857632-46857709)
chr7 (203-338)||(20114555-20114690)
chr7 (25-75)||(18995363-18995413)
chr7 (48-98)||(25706699-25706749)
chr7 (21-75)||(31135539-31135593)
[»] scaffold0006 (1 HSPs)
scaffold0006 (24-92)||(93131-93199)
[»] chr2 (6 HSPs)
chr2 (24-92)||(24003200-24003268)
chr2 (16-66)||(22381794-22381844)
chr2 (16-66)||(22913820-22913870)
chr2 (15-96)||(22999665-22999746)
chr2 (25-92)||(20125738-20125805)
chr2 (24-92)||(37787142-37787210)
[»] scaffold0069 (1 HSPs)
scaffold0069 (24-92)||(19389-19457)
[»] scaffold0044 (1 HSPs)
scaffold0044 (25-92)||(22026-22093)
[»] scaffold0625 (1 HSPs)
scaffold0625 (25-75)||(1243-1293)


Alignment Details
Target: chr8 (Bit Score: 349; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 11 - 553
Target Start/End: Original strand, 7406505 - 7407048
Alignment:
Q  11 cacagaacgaattcaagaaccaacaactccttgcaacaacaacaagcataacgtctcttttgagccaaaaagtccaacatcaaacaaagcagactaagtg 110  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  7406505 cacaaaacgaattcaagaaccaacaactacttgcaacaacaacaagcataacgtctcttttgagccaaaaagtccaacatcaaacaaagcggactaagtg 7406604  T
Q  111 agtgtttagagcatctaaactggcgtatgaatcgtctgccaacacagaggcgttccaagatccacttgttccctgc-nnnnnnnnnnnnngcaagcctta 209  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||              ||||||||||    
T  7406605 agtgtttagagcatctaaactggcgtatgaatcgtctaccaacacagaggcgttccaagatccacctgttccctgcaaaaaaaagaaaaagcaagcctta 7406704  T
Q  210 aatgccctttctagccaaaaccatccatttaaacacagtgtcacaaccccaaaccgagtgaacacccaccagaacttggatctttgtaccagcaaccaat 309  Q
    ||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  7406705 aatgccctttccagccaaaaccatccatttgaacacagtgtcacgaccccaaaccgagtgaacacccaccagaacttggatcttcgtaccatcaaccaat 7406804  T
Q  310 atgtctgaattcaatcaaagaggattgacgcgtaaaatatacattggtatatttattatttgtatattagtgnnnnnnnnnnnnggtgtaagccctcttt 409  Q
    |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||            ||||||||||||||||    
T  7406805 atgtctgaattcaatcaaagagaattgacgcgtaaaatatacattagtatatttattatttgtatattagtg-ttttttttttgggtgtaagccctcttt 7406903  T
Q  410 a-cnnnnnnnntatatacatatgcatttaatcatatctcactgttatacagtttggttatattagtttctaaagtatatatgtgacggtggaatgtgatt 508  Q
    | |         |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7406904 accaaaagaaaaatatacatatgcatttaatcatatctcattgttatacagtttggttatattagtttctaaagtatatatgtgacggtggaatgtgatt 7407003  T
Q  509 aaccgaagtgtaatattcttttgtattgataatgcatacaaatta 553  Q
     | ||| |||||||||| ||||||||||||||| |||||||||||    
T  7407004 gatcgatgtgtaatatttttttgtattgataatacatacaaatta 7407048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 24 - 94
Target Start/End: Original strand, 22998380 - 22998450
Alignment:
Q  24 caagaaccaacaactccttgcaacaacaacaagcataacgtctcttttgagccaaaaagtccaacatcaaa 94  Q
    |||||||||||| |||||||| ||| ||||||||||||||||||||| |||||||| ||||||||||||||    
T  22998380 caagaaccaacagctccttgcgacagcaacaagcataacgtctctttcgagccaaacagtccaacatcaaa 22998450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 96
Target Start/End: Complemental strand, 13104135 - 13104063
Alignment:
Q  24 caagaaccaacaactccttgcaacaacaacaagcataacgtctcttttgagccaaaaagtccaacatcaaaca 96  Q
    ||||||||||||||||| || |||| |||||||| ||| || ||||| |||| |||  |||||||||||||||    
T  13104135 caagaaccaacaactccgtgaaacatcaacaagcctaatgtttctttcgagctaaactgtccaacatcaaaca 13104063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 7e-29; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 11 - 92
Target Start/End: Complemental strand, 5325420 - 5325339
Alignment:
Q  11 cacagaacgaattcaagaaccaacaactccttgcaacaacaacaagcataacgtctcttttgagccaaaaagtccaacatca 92  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||    
T  5325420 cacaaaacgaattcaagaaccaacaactccttacaacaacaacaagcataacgtctcttttgagccaaacaatccaacatca 5325339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 24 - 94
Target Start/End: Original strand, 15030029 - 15030099
Alignment:
Q  24 caagaaccaacaactccttgcaacaacaacaagcataacgtctcttttgagccaaaaagtccaacatcaaa 94  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  15030029 caagaaccaacaactccttgcgacaacaacaagcataacgtctctttcgagccaaacagtccaacatcaaa 15030099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 19 - 96
Target Start/End: Original strand, 31253839 - 31253916
Alignment:
Q  19 gaattcaagaaccaacaactccttgcaacaacaacaagcataacgtctcttttgagccaaaaagtccaacatcaaaca 96  Q
    |||| ||||||||||||||||||||| |||||||||||| |||| ||||| | |||||||| ||||||||||||||||    
T  31253839 gaatccaagaaccaacaactccttgcgacaacaacaagcctaacatctctatcgagccaaacagtccaacatcaaaca 31253916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 24 - 92
Target Start/End: Complemental strand, 26228215 - 26228147
Alignment:
Q  24 caagaaccaacaactccttgcaacaacaacaagcataacgtctcttttgagccaaaaagtccaacatca 92  Q
    |||||||||||||||| |||||||||||||||||| ||| ||||||| |||||||| ||||||||||||    
T  26228215 caagaaccaacaactcattgcaacaacaacaagcacaacatctctttcgagccaaatagtccaacatca 26228147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 11077474 - 11077547
Alignment:
Q  19 gaattcaagaaccaacaactccttgcaacaacaacaagcataacgtctcttttgagccaaaaagtccaacatca 92  Q
    |||| ||||||||||||||||||||| ||| |||||||| ||| |||||||| |||||||| ||||||||||||    
T  11077474 gaatccaagaaccaacaactccttgcgacagcaacaagcctaatgtctctttcgagccaaacagtccaacatca 11077547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 94
Target Start/End: Original strand, 42478394 - 42478464
Alignment:
Q  24 caagaaccaacaactccttgcaacaacaacaagcataacgtctcttttgagccaaaaagtccaacatcaaa 94  Q
    ||||||||||||||| ||| | ||| ||||||| ||||||||| ||| ||| |||| ||||||||||||||    
T  42478394 caagaaccaacaacttcttacgacagcaacaagtataacgtctttttcgagtcaaacagtccaacatcaaa 42478464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 64
Target Start/End: Complemental strand, 7661032 - 7660983
Alignment:
Q  15 gaacgaattcaagaaccaacaactccttgcaacaacaacaagcataacgt 64  Q
    |||||||| |||||||||||||| ||||| || | |||||||||||||||    
T  7661032 gaacgaatccaagaaccaacaaccccttgtaatagcaacaagcataacgt 7660983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 20128059 - 20128107
Alignment:
Q  21 attcaagaaccaacaactccttgcaacaacaacaagcataacgtctctt 69  Q
    |||||||||||||||||||||||| | | ||||||||| ||| ||||||    
T  20128059 attcaagaaccaacaactccttgcgatagcaacaagcacaacctctctt 20128107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 2e-23; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 19 - 186
Target Start/End: Original strand, 39950834 - 39951001
Alignment:
Q  19 gaattcaagaaccaacaactccttgcaacaacaacaagcataacgtctcttttgagccaaaaagtccaacatcaaacaaagcagact-aagtgagtgttt 117  Q
    |||||||||||| ||||  || ||| |||||| |||| ||||| || ||||| |||| ||| ||||| |  |||||||||||||||| ||||||||||||    
T  39950834 gaattcaagaac-aacatttcattgtaacaaccacaaacataatgtatctttcgagctaaagagtcccaactcaaacaaagcagacttaagtgagtgttt 39950932  T
Q  118 agagcatctaaactggcgtatgaatcgtctgccaacacagaggcgttccaagatccacttgttccctgc 186  Q
    | ||||||||||| | | ||||||||||||| ||||||| | ||| | ||||||||| |||||||||||    
T  39950933 aaagcatctaaacagacatatgaatcgtctgtcaacacaaaagcgattcaagatccatttgttccctgc 39951001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 25 - 94
Target Start/End: Original strand, 6473071 - 6473140
Alignment:
Q  25 aagaaccaacaactccttgcaacaacaacaagcataacgtctcttttgagccaaaaagtccaacatcaaa 94  Q
    |||||||||||||||||||||||||||||||| |||| |||||||| |||||||| |||||| |||||||    
T  6473071 aagaaccaacaactccttgcaacaacaacaagaataatgtctctttcgagccaaacagtccatcatcaaa 6473140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 15 - 70
Target Start/End: Original strand, 4611705 - 4611760
Alignment:
Q  15 gaacgaattcaagaaccaacaactccttgcaacaacaacaagcataacgtctcttt 70  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  4611705 gaacgaatccaagaaccaacaactccttgcaacaacaacaagcataatgtctcttt 4611760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 24 - 94
Target Start/End: Complemental strand, 15819988 - 15819918
Alignment:
Q  24 caagaaccaacaactccttgcaacaacaacaagcataacgtctcttttgagccaaaaagtccaacatcaaa 94  Q
    ||||||||||||||||||||| | |  |||||||||||||||||||| |||||||| ||||||||||||||    
T  15819988 caagaaccaacaactccttgcgatagaaacaagcataacgtctctttcgagccaaacagtccaacatcaaa 15819918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 24 - 92
Target Start/End: Complemental strand, 40475164 - 40475096
Alignment:
Q  24 caagaaccaacaactccttgcaacaacaacaagcataacgtctcttttgagccaaaaagtccaacatca 92  Q
    ||||||||||||||||||||| ||||||||||||| ||| ||||||| ||| |||| ||||||||||||    
T  40475164 caagaaccaacaactccttgcgacaacaacaagcaaaacatctctttcgagacaaacagtccaacatca 40475096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 24 - 94
Target Start/End: Original strand, 6473587 - 6473657
Alignment:
Q  24 caagaaccaacaactccttgcaacaacaacaagcataacgtctcttttgagccaaaaagtccaacatcaaa 94  Q
    |||||||||||||||| |||||||||||||||| |||| |||||||| |||| ||| |||||| |||||||    
T  6473587 caagaaccaacaactctttgcaacaacaacaagaataatgtctctttcgagctaaagagtccatcatcaaa 6473657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 24 - 94
Target Start/End: Original strand, 6512807 - 6512877
Alignment:
Q  24 caagaaccaacaactccttgcaacaacaacaagcataacgtctcttttgagccaaaaagtccaacatcaaa 94  Q
    |||||||||||||||| ||||||||||| |||| |||| |||||||| |||||||| |||||| |||||||    
T  6512807 caagaaccaacaactctttgcaacaacagcaagaataatgtctctttcgagccaaacagtccagcatcaaa 6512877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 24 - 94
Target Start/End: Complemental strand, 6748414 - 6748344
Alignment:
Q  24 caagaaccaacaactccttgcaacaacaacaagcataacgtctcttttgagccaaaaagtccaacatcaaa 94  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||| |||| ||| | |||| |||||||    
T  6748414 caagaaccaacaactccttgcaacaacaacaagaataatgtctctttcgagctaaacaatccatcatcaaa 6748344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 3330659 - 3330734
Alignment:
Q  19 gaattcaagaaccaacaactccttgcaacaa--caacaagcataacgtctcttttgagccaaaaagtccaacatca 92  Q
    |||| ||||||||||||||||||||| |||   |||||||| |||||||||||| |||||||| ||||||||||||    
T  3330659 gaatccaagaaccaacaactccttgcgacatagcaacaagcctaacgtctctttcgagccaaacagtccaacatca 3330734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 92
Target Start/End: Original strand, 818172 - 818240
Alignment:
Q  24 caagaaccaacaactccttgcaacaacaacaagcataacgtctcttttgagccaaaaagtccaacatca 92  Q
    ||||||||||||||||||||| ||| ||||||||| | ||||||||| ||| |||| | ||||||||||    
T  818172 caagaaccaacaactccttgcgacagcaacaagcaaagcgtctctttcgagacaaacaatccaacatca 818240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 328
Target Start/End: Original strand, 39951077 - 39951150
Alignment:
Q  255 accccaaaccgagtgaacacccaccagaacttggatctttgtaccagcaaccaatatgtctgaattcaatcaaa 328  Q
    |||||||||  ||| |||||| |||| |||||||||||| ||| |||| | |||||| ||| ||||||||||||    
T  39951077 accccaaactaagtcaacaccaaccaaaacttggatcttcgtatcagccatcaatatttctaaattcaatcaaa 39951150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 6e-23; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 15 - 94
Target Start/End: Complemental strand, 27572158 - 27572079
Alignment:
Q  15 gaacgaattcaagaaccaacaactccttgcaacaacaacaagcataacgtctcttttgagccaaaaagtccaacatcaaa 94  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||| ||||||| |||||||| | ||||||||||||    
T  27572158 gaacgaatccaagaaccaacaactctttgcaacaacaacaagcataacatctctttcgagccaaacaatccaacatcaaa 27572079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 17888364 - 17888417
Alignment:
Q  26 agaaccaacaactccttgcaacaacaacaagcataacgtctcttttgagccaaa 79  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  17888364 agaaccaacaactccttgcagcaacaacaagcataacgtctcttttgagccaaa 17888417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 24 - 92
Target Start/End: Original strand, 31038232 - 31038300
Alignment:
Q  24 caagaaccaacaactccttgcaacaacaacaagcataacgtctcttttgagccaaaaagtccaacatca 92  Q
    ||||||||| ||||||||||| |||||||||||||||| |||||||| |||||||| ||||||||||||    
T  31038232 caagaaccagcaactccttgcgacaacaacaagcataatgtctctttcgagccaaacagtccaacatca 31038300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 24 - 94
Target Start/End: Original strand, 25646724 - 25646794
Alignment:
Q  24 caagaaccaacaactccttgcaacaacaacaagcataacgtctcttttgagccaaaaagtccaacatcaaa 94  Q
    ||||||||||||||||||||| ||| ||||||||||| ||||||||| |||| ||||| ||||||||||||    
T  25646724 caagaaccaacaactccttgcgacagcaacaagcatagcgtctctttcgagctaaaaaatccaacatcaaa 25646794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 34 - 92
Target Start/End: Complemental strand, 33473682 - 33473624
Alignment:
Q  34 caactccttgcaacaacaacaagcataacgtctcttttgagccaaaaagtccaacatca 92  Q
    ||||||||||| |||||||||||||| ||||||||||||||||||| | ||||||||||    
T  33473682 caactccttgcgacaacaacaagcatgacgtctcttttgagccaaacaatccaacatca 33473624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 11 - 93
Target Start/End: Original strand, 18467611 - 18467697
Alignment:
Q  11 cacagaacgaattcaaga----accaacaactccttgcaacaacaacaagcataacgtctcttttgagccaaaaagtccaacatcaa 93  Q
    |||| |||||||||||||    |||||||||| ||||||||| |||||| |||||| ||||||| |||||||| |||| ||||||||    
T  18467611 cacaaaacgaattcaagaacgtaccaacaacttcttgcaacagcaacaaacataacatctctttcgagccaaacagtcaaacatcaa 18467697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 92
Target Start/End: Original strand, 51995373 - 51995441
Alignment:
Q  24 caagaaccaacaactccttgcaacaacaacaagcataacgtctcttttgagccaaaaagtccaacatca 92  Q
    ||||||||||||||||||||| ||| ||||||||| | ||||||||| ||| |||| | ||||||||||    
T  51995373 caagaaccaacaactccttgcgacagcaacaagcaaagcgtctctttcgagacaaacaatccaacatca 51995441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 94
Target Start/End: Complemental strand, 32907994 - 32907924
Alignment:
Q  24 caagaaccaacaactccttgcaacaacaacaagcataacgtctcttttgagccaaaaagtccaacatcaaa 94  Q
    |||||||| |||||||||||| |||||||||||||||| |||||  | |||||||| | || |||||||||    
T  32907994 caagaaccgacaactccttgcgacaacaacaagcataatgtctccatcgagccaaacaatctaacatcaaa 32907924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 173
Target Start/End: Complemental strand, 19050194 - 19050145
Alignment:
Q  124 tctaaactggcgtatgaatcgtctgccaacacagaggcgttccaagatcc 173  Q
    |||||||||||||||||||| ||||||| |||||| ||| | ||||||||    
T  19050194 tctaaactggcgtatgaatcatctgccagcacagaagcgattcaagatcc 19050145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 24 - 94
Target Start/End: Complemental strand, 12522434 - 12522364
Alignment:
Q  24 caagaaccaacaactccttgcaacaacaacaagcataacgtctcttttgagccaaaaagtccaacatcaaa 94  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||| ||||||||||||||    
T  12522434 caagaaccaacaactccttgcgacaacaacaagcataacatctctttcgagccaaacagtccaacatcaaa 12522364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 210 - 310
Target Start/End: Original strand, 11715617 - 11715717
Alignment:
Q  210 aatgccctttctagccaaaaccatccatttaaacacagtgtcacaaccccaaaccgagtgaacacccaccagaacttggatctttgtaccagcaaccaat 309  Q
    |||||||||||  ||||||||||||||||| ||| ||| ||||| |||| ||||||||| ||||| |||| |||| |||| |||  ||||| |||| |||    
T  11715617 aatgccctttcgggccaaaaccatccatttcaacgcagcgtcacgaccctaaaccgagtcaacacacaccggaacatggaccttcataccaacaacaaat 11715716  T
Q  310 a 310  Q
    |    
T  11715717 a 11715717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 11715490 - 11715554
Alignment:
Q  11 cacagaacgaattcaagaaccaacaactccttgcaacaacaacaagcataacgtctcttttgagc 75  Q
    |||||| | ||| |||||||||||||||| |||||| | |||||||| |||||||||||| ||||    
T  11715490 cacagatcaaatccaagaaccaacaactctttgcaatagcaacaagcctaacgtctctttcgagc 11715554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 97
Target Start/End: Original strand, 15641528 - 15641619
Alignment:
Q  9 agcacagaacgaattcaagaaccaacaactccttgcaacaacaacaag---cataacgtctcttttgagccaaaaagtccaacatcaaacaa 97  Q
    |||||| |||| || ||||||||||||||| |  |||||||||||||    ||||| |||||||| ||| |||| ||||| |||||||||||    
T  15641528 agcacaaaacggatccaagaaccaacaacttccggcaacaacaacaataaacataaggtctctttcgagtcaaacagtccgacatcaaacaa 15641619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 4e-21; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 11 - 95
Target Start/End: Complemental strand, 20809080 - 20808996
Alignment:
Q  11 cacagaacgaattcaagaaccaacaactccttgcaacaacaacaagcataacgtctcttttgagccaaaaagtccaacatcaaac 95  Q
    |||||||||| | ||| ||||||||||||||||||||| |||||||  |||||||||||||||| |||| |||||||||||||||    
T  20809080 cacagaacgagtccaaaaaccaacaactccttgcaacagcaacaagtctaacgtctcttttgaggcaaacagtccaacatcaaac 20808996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 24 - 94
Target Start/End: Original strand, 8016121 - 8016191
Alignment:
Q  24 caagaaccaacaactccttgcaacaacaacaagcataacgtctcttttgagccaaaaagtccaacatcaaa 94  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||| | ||||||||||||    
T  8016121 caagaaccaacaactccttgcgacatcaacaagcataacgtctctttcgagccaaacaatccaacatcaaa 8016191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 41908172 - 41908089
Alignment:
Q  11 cacagaacgaattcaagaaccaacaactccttgcaacaacaacaagcataacgtctcttttgagccaaaaagtccaacatcaaa 94  Q
    |||| ||||||||||||||||||||||| |||||| |||||||||||||||| ||||||| |||| |||   ||||||||||||    
T  41908172 cacaaaacgaattcaagaaccaacaacttcttgcagcaacaacaagcataacatctctttcgagctaaactatccaacatcaaa 41908089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 11351498 - 11351577
Alignment:
Q  16 aacgaattcaagaaccaacaactccttgcaacaacaacaagcataacgtctcttttgagccaaaaagtccaacatcaaaca 96  Q
    ||||||| ||||||||| || ||||||||||||  |||||||||||||||||||| ||| |||| ||||||||||||||||    
T  11351498 aacgaatccaagaaccagcacctccttgcaacaggaacaagcataacgtctctttcgag-caaacagtccaacatcaaaca 11351577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 24 - 94
Target Start/End: Complemental strand, 790825 - 790755
Alignment:
Q  24 caagaaccaacaactccttgcaacaacaacaagcataacgtctcttttgagccaaaaagtccaacatcaaa 94  Q
    ||||||||||||||||||||  ||| ||||||||||||| ||| ||| |||||||| ||||||||||||||    
T  790825 caagaaccaacaactccttgtgacagcaacaagcataacatctttttcgagccaaacagtccaacatcaaa 790755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 24 - 92
Target Start/End: Original strand, 32105598 - 32105666
Alignment:
Q  24 caagaaccaacaactccttgcaacaacaacaagcataacgtctcttttgagccaaaaagtccaacatca 92  Q
    ||||||||||||||||||||| ||| ||||||||| | ||||||||| ||| |||| ||||||||||||    
T  32105598 caagaaccaacaactccttgcgacagcaacaagcaaagcgtctctttcgagacaaacagtccaacatca 32105666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 96
Target Start/End: Original strand, 27007238 - 27007317
Alignment:
Q  17 acgaattcaagaaccaacaactccttgcaacaacaacaagcataacgtctcttttgagccaaaaagtccaacatcaaaca 96  Q
    |||||| ||||||||||||||| ||||||| ||||| |||||| |||||||||| |||||||| |   ||||||||||||    
T  27007238 acgaatccaagaaccaacaacttcttgcaataacaataagcattacgtctctttcgagccaaacatcacaacatcaaaca 27007317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 225 - 305
Target Start/End: Complemental strand, 41907978 - 41907898
Alignment:
Q  225 caaaaccatccatttaaacacagtgtcacaaccccaaaccgagtgaacacccaccagaacttggatctttgtaccagcaac 305  Q
    ||||||| ||||||||||| ||||||| | ||||||||| |||| ||||| ||||  |||||||| ||| |||| ||||||    
T  41907978 caaaaccgtccatttaaacgcagtgtcgcgaccccaaactgagtcaacacacaccgaaacttggaccttcgtacaagcaac 41907898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 172
Target Start/End: Complemental strand, 41908065 - 41908026
Alignment:
Q  133 gcgtatgaatcgtctgccaacacagaggcgttccaagatc 172  Q
    |||||||||||||||||||||||||||| | |||||||||    
T  41908065 gcgtatgaatcgtctgccaacacagaggtgatccaagatc 41908026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 124 - 158
Target Start/End: Original strand, 9394310 - 9394344
Alignment:
Q  124 tctaaactggcgtatgaatcgtctgccaacacaga 158  Q
    |||||||||||||||| ||||||||||||||||||    
T  9394310 tctaaactggcgtatggatcgtctgccaacacaga 9394344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 52245347 - 52245283
Alignment:
Q  14 agaacgaattcaagaaccaacaactccttgcaacaacaacaagcataacgtctcttttgagccaa 78  Q
    |||| |||| ||| |||||||| |||||||| | | |||||||||||| |||||||| |||||||    
T  52245347 agaatgaatccaaaaaccaacatctccttgcgaaagcaacaagcataatgtctctttcgagccaa 52245283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 6e-20; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 24 - 94
Target Start/End: Original strand, 7194032 - 7194102
Alignment:
Q  24 caagaaccaacaactccttgcaacaacaacaagcataacgtctcttttgagccaaaaagtccaacatcaaa 94  Q
    ||||||||||||||||||||||||| | |||| |||||||||||||| |||||||| ||||||||||||||    
T  7194032 caagaaccaacaactccttgcaacagccacaaacataacgtctctttcgagccaaacagtccaacatcaaa 7194102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 19 - 96
Target Start/End: Original strand, 23846322 - 23846399
Alignment:
Q  19 gaattcaagaaccaacaactccttgcaacaacaacaagcataacgtctcttttgagccaaaaagtccaacatcaaaca 96  Q
    |||| ||||||||||||||||||||| ||| |||||||| |||| ||||||| |||||||| ||||||||||||||||    
T  23846322 gaatccaagaaccaacaactccttgcgacagcaacaagcctaacatctctttcgagccaaacagtccaacatcaaaca 23846399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 24 - 92
Target Start/End: Complemental strand, 39605865 - 39605797
Alignment:
Q  24 caagaaccaacaactccttgcaacaacaacaagcataacgtctcttttgagccaaaaagtccaacatca 92  Q
    ||||||||||||||||||||| ||| ||||||| ||||||||||||| |||||||| ||||||||||||    
T  39605865 caagaaccaacaactccttgcgacagcaacaagtataacgtctctttcgagccaaacagtccaacatca 39605797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 24 - 90
Target Start/End: Complemental strand, 24688312 - 24688246
Alignment:
Q  24 caagaaccaacaactccttgcaacaacaacaagcataacgtctcttttgagccaaaaagtccaacat 90  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||| |||| |||||    
T  24688312 caagaaccaacaactccttgcaacagcaacaagtataacgtctctttcgagccaaagagtcgaacat 24688246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 28 - 94
Target Start/End: Complemental strand, 24056382 - 24056316
Alignment:
Q  28 aaccaacaactccttgcaacaacaacaagcataacgtctcttttgagccaaaaagtccaacatcaaa 94  Q
    ||||||||||||||||| ||| ||||||||||| ||||||||| |||| ||||| ||||||||||||    
T  24056382 aaccaacaactccttgcgacagcaacaagcatagcgtctctttcgagctaaaaaatccaacatcaaa 24056316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 46857709 - 46857632
Alignment:
Q  19 gaattcaagaaccaacaactccttgcaacaacaacaagcataacgtctcttttgagccaaaaagtccaacatcaaaca 96  Q
    |||| ||||||||||||||||||||| ||| |||||||| |||| ||||||| ||||||||   ||||||||||||||    
T  46857709 gaatccaagaaccaacaactccttgcgacagcaacaagcctaacatctctttcgagccaaacgatccaacatcaaaca 46857632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 203 - 338
Target Start/End: Original strand, 20114555 - 20114690
Alignment:
Q  203 agccttaaatgccctttctagccaaaaccatccatttaaacacagtgtcacaaccccaaaccgagtgaacacccaccagaacttggatctttgtaccagc 302  Q
    |||||| |||||||||||   |||||||||||||||| ||| ||  ||| | || | |||| |||| ||||| || | ||||||||| |||  |||||||    
T  20114555 agccttcaatgccctttcagaccaaaaccatccatttgaacgcaacgtcgcgactctaaactgagtcaacacacaacggaacttggaccttcctaccagc 20114654  T
Q  303 aaccaatatgtctgaattcaatcaaagaggattgac 338  Q
    |||||||  || |||||||||| || ||||||||||    
T  20114655 aaccaatcagtatgaattcaattaaggaggattgac 20114690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 18995363 - 18995413
Alignment:
Q  25 aagaaccaacaactccttgcaacaacaacaagcataacgtctcttttgagc 75  Q
    |||||||||||||||||||| |||||||||||||||  |||||||| ||||    
T  18995363 aagaaccaacaactccttgcgacaacaacaagcatagtgtctctttcgagc 18995413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 48 - 98
Target Start/End: Complemental strand, 25706749 - 25706699
Alignment:
Q  48 aacaacaagcataacgtctcttttgagccaaaaagtccaacatcaaacaaa 98  Q
    ||||||||||| |||| |||||| |||||||| ||||||||||||||||||    
T  25706749 aacaacaagcaaaacgcctctttcgagccaaatagtccaacatcaaacaaa 25706699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 31135593 - 31135539
Alignment:
Q  21 attcaagaaccaacaactccttgcaacaacaacaagcataacgtctcttttgagc 75  Q
    |||||||||||||||||||||||| |   |||||| |||||||||||||| ||||    
T  31135593 attcaagaaccaacaactccttgcgattgcaacaaacataacgtctctttcgagc 31135539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 24 - 92
Target Start/End: Original strand, 93131 - 93199
Alignment:
Q  24 caagaaccaacaactccttgcaacaacaacaagcataacgtctcttttgagccaaaaagtccaacatca 92  Q
    |||||||||| |||||||||||| ||||||||| ||||||||||||| |||||||| ||||||||||||    
T  93131 caagaaccaagaactccttgcaataacaacaagtataacgtctctttcgagccaaacagtccaacatca 93199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 9e-19; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 24 - 92
Target Start/End: Original strand, 24003200 - 24003268
Alignment:
Q  24 caagaaccaacaactccttgcaacaacaacaagcataacgtctcttttgagccaaaaagtccaacatca 92  Q
    ||||||||||||||||||||| ||| |||||| |||||||||||||| |||||||| ||||||||||||    
T  24003200 caagaaccaacaactccttgcgacagcaacaaacataacgtctctttcgagccaaacagtccaacatca 24003268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 22381844 - 22381794
Alignment:
Q  16 aacgaattcaagaaccaacaactccttgcaacaacaacaagcataacgtct 66  Q
    ||||||| |||||||||||||||| ||||| ||||||||||||||||||||    
T  22381844 aacgaatccaagaaccaacaactcgttgcagcaacaacaagcataacgtct 22381794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 22913870 - 22913820
Alignment:
Q  16 aacgaattcaagaaccaacaactccttgcaacaacaacaagcataacgtct 66  Q
    ||||||| |||||||||||||||| ||||| ||||||||||||||||||||    
T  22913870 aacgaatccaagaaccaacaactcgttgcagcaacaacaagcataacgtct 22913820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 15 - 96
Target Start/End: Original strand, 22999665 - 22999746
Alignment:
Q  15 gaacgaattcaagaaccaacaactccttgcaacaacaacaagcataacgtctcttttgagccaaaaagtccaacatcaaaca 96  Q
    ||||||||  ||||||||||||||| ||||| |||||||||||||||||||| ||| |||  ||| | |||||| |||||||    
T  22999665 gaacgaatctaagaaccaacaactcgttgcagcaacaacaagcataacgtctatttcgagtgaaacaatccaacttcaaaca 22999746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 25 - 92
Target Start/End: Complemental strand, 20125805 - 20125738
Alignment:
Q  25 aagaaccaacaactccttgcaacaacaacaagcataacgtctcttttgagccaaaaagtccaacatca 92  Q
    ||||| ||| |||||||||| |||| |||||| |||||||||||||  ||||||| ||||||||||||    
T  20125805 aagaatcaagaactccttgcgacaagaacaagtataacgtctctttcaagccaaatagtccaacatca 20125738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 92
Target Start/End: Original strand, 37787142 - 37787210
Alignment:
Q  24 caagaaccaacaactccttgcaacaacaacaagcataacgtctcttttgagccaaaaagtccaacatca 92  Q
    |||| |||| ||||||||||| ||| ||||||||||| |||||||||   |||||| ||||||||||||    
T  37787142 caaggaccaccaactccttgcgacagcaacaagcatagcgtctctttcatgccaaagagtccaacatca 37787210  T

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Target: scaffold0069 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 92
Target Start/End: Original strand, 19389 - 19457
Alignment:
Q  24 caagaaccaacaactccttgcaacaacaacaagcataacgtctcttttgagccaaaaagtccaacatca 92  Q
    |||||||||| |||||||||| ||| ||| ||| ||||||||||||| |||||||| |||||| |||||    
T  19389 caagaaccaagaactccttgctacagcaataagtataacgtctctttcgagccaaacagtccagcatca 19457  T

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Target: scaffold0044 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 25 - 92
Target Start/End: Complemental strand, 22093 - 22026
Alignment:
Q  25 aagaaccaacaactccttgcaacaacaacaagcataacgtctcttttgagccaaaaagtccaacatca 92  Q
    |||||||||||||||||||| ||| |||||||| |||| || ||||  ||||||| ||||||||||||    
T  22093 aagaaccaacaactccttgcgacatcaacaagcctaacatcactttcaagccaaacagtccaacatca 22026  T

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Target: scaffold0625 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0625
Description:

Target: scaffold0625; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 75
Target Start/End: Complemental strand, 1293 - 1243
Alignment:
Q  25 aagaaccaacaactccttgcaacaacaacaagcataacgtctcttttgagc 75  Q
    |||||||||||||||||||| |||||||||||||||  |||||||| ||||    
T  1293 aagaaccaacaactccttgcgacaacaacaagcatagtgtctctttcgagc 1243  T

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