View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16070_high_2 (Length: 565)
Name: NF16070_high_2
Description: NF16070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16070_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 394; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 146 - 547
Target Start/End: Complemental strand, 3950422 - 3950021
Alignment:
| Q |
146 |
taaaattaattataacttgactcaaaacgtcatttttgtactaaacataaatcacttcatacaactcacttacaagtaaacccaattttacagaataaat |
245 |
Q |
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| T |
3950422 |
taaaattaattataacttgactcaaaacgtcatttttgtactaaacataaatcacttcatacaactcacttacaagtaaacccaattttacagaataaat |
3950323 |
T |
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| Q |
246 |
tcattcaaaatcattgttgtcactgcaaaaatacaaacacactgaaaggatccaaattcatggttggatatggcgatgaatggggataattcccacagaa |
345 |
Q |
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| T |
3950322 |
tcattcaaaatcattgttgtcactgcaaaactacaaacacactgaaaggatccaaattcatggttggatatggcgatgaatggggataattcccacagaa |
3950223 |
T |
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| Q |
346 |
ctttgcaataaaaatcatttaagagaaaaaattcatcaaaattaacacaaaactcaattagtactattattttcttaccacgagcttgtaaagtttagct |
445 |
Q |
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| T |
3950222 |
ctttgcaataaaaatcatttaagagaaaaaattcatcaaaattaacacaaaactcaattagtactattattttcttaccacgagcttgtaaagtttagct |
3950123 |
T |
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| Q |
446 |
taactgacaataccgatattgataggttggacctctttacctgtgttccaacccaagacctcggagttatgggtgtgagttttatgttgtatttgtgact |
545 |
Q |
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| T |
3950122 |
taactgacaataccgatattgataggttggacctctttacctgtgttccaacccgagacctcggagttatgggtgtgagttttatgttgtatttgtgact |
3950023 |
T |
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| Q |
546 |
ct |
547 |
Q |
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|| |
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| T |
3950022 |
ct |
3950021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 17 - 152
Target Start/End: Complemental strand, 3950759 - 3950624
Alignment:
| Q |
17 |
aaatagcaggggcaaaagttgacttgccaaacagtacacatgctggaaatatctgtatgaatcgtgtatcatcaacaaaaacaaaatttgtatgaacatg |
116 |
Q |
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| T |
3950759 |
aaatagcaggggcaaaagttgacttgccaaacagtacacatgctggaaatatctgtatgaatcgtgtatcatcaacaaaaacaaaatttgtatgaacatg |
3950660 |
T |
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| Q |
117 |
tgacatgcactttcctttaagttttttgataaaatt |
152 |
Q |
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| T |
3950659 |
tgacatgcactttcctttaagttttttgataaaatt |
3950624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 4028122 - 4028182
Alignment:
| Q |
17 |
aaatagcaggggcaaaagttgacttgccaaacagtacacatgctggaaatatctgtatgaa |
77 |
Q |
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| T |
4028122 |
aaatagcaggggcaaacgttgagttgcttaacaatttacatgctggaattatctgtatgaa |
4028182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 483
Target Start/End: Original strand, 44090562 - 44090615
Alignment:
| Q |
430 |
cttgtaaagtttagcttaactgacaataccgatattgataggttggacctcttt |
483 |
Q |
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| T |
44090562 |
cttgtaaagtttagatcaactgacaatactgatattgttaggttgaacatcttt |
44090615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 223 - 255
Target Start/End: Complemental strand, 25026159 - 25026127
Alignment:
| Q |
223 |
aaacccaattttacagaataaattcattcaaaa |
255 |
Q |
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| T |
25026159 |
aaacccaattttacagaatcaattcattcaaaa |
25026127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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