View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16070_high_3 (Length: 529)
Name: NF16070_high_3
Description: NF16070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16070_high_3 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
| [»] scaffold0286 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 490; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 16 - 529
Target Start/End: Complemental strand, 29121527 - 29121014
Alignment:
| Q |
16 |
tcataggcttattaattaatatggattttaatgcttgcaggaagctattgttgatccaccatatgttgcctttgcagtaaggccagaccctggagtttgg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29121527 |
tcataggcttattaattaatatggattttaatgcttgcaggaagctattgttgatccaccatatgttgcctttgcagtaaggccagaccctggagtttgg |
29121428 |
T |
|
| Q |
116 |
gaatatgtaaaagtgagctctgagaatctttcagttgaacctataacatccaccgattacctcaaattcaaggaaagaatatacgatcaaaaatggtaca |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
29121427 |
gaatatgtaaaagtgagctctgagaatctttcagttgaacctataacatccaccgattacctcaaattcaaggaaagaatatacgaccaaaaatggtaca |
29121328 |
T |
|
| Q |
216 |
atgccatttcaattatagtacttttttactttaaagttttcaacatgtcatgcttccattttccctaattagccaacaatttttaatggttaacttgggt |
315 |
Q |
| |
|
||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29121327 |
atgccatttcagttatagtactttttcattttaaagttttcaacatgtcatgcttccattttccctaattagccaacaatttttaatggttaacttgggt |
29121228 |
T |
|
| Q |
316 |
ttatgttgtagggcaaacgatgaaaatgcacttgaagcagattttggagcatttgactttcctattcctaacttaaaattgccttcttcaattggaaatg |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29121227 |
ttatgttgtagggcaaacgatgaaaatgcacttgaagcagattttggagcatttgactttcctattcctaacttaaaattgccttcttcaattggaaatg |
29121128 |
T |
|
| Q |
416 |
gactccattttgtttcaaagttcttaacttcacgttttagtggcaaattggcaaaaactcaacctatattggactacttgttatcactaaatcatcaagg |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29121127 |
gactccattttgtttcaaagttcttaacttcacgatttagtgtcaaattggcaaaaactcaacctatattggactacttgttatcactaaatcatcaagg |
29121028 |
T |
|
| Q |
516 |
agaagtaaatacaa |
529 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
29121027 |
agaagtaaatacaa |
29121014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 322 - 523
Target Start/End: Original strand, 32774337 - 32774538
Alignment:
| Q |
322 |
tgtagggcaaacgatgaaaatgcacttgaagcagattttggagcatttgactttcctattcctaacttaaaattgccttcttcaattggaaatggactcc |
421 |
Q |
| |
|
||||||||||| |||||||||||| |||||||||| |||||||||||||| || |||||||| |||| ||| |||||||||||||||||||||| | |
|
|
| T |
32774337 |
tgtagggcaaatgatgaaaatgcatttgaagcagactttggagcatttgatattgggattcctaaattaaccttgtcttcttcaattggaaatggactac |
32774436 |
T |
|
| Q |
422 |
attttgtttcaaagttcttaacttcacgttttagtggcaaattggcaaaaactcaacctatattggactacttgttatcactaaatcatcaaggagaagt |
521 |
Q |
| |
|
| |||||||||||||||||||||||| | | ||| |||||||| ||| | || ||||| |||||||||||||| |||||||||||| |||||||| |
|
|
| T |
32774437 |
actttgtttcaaagttcttaacttcaaggacaactgggaaattggccaaagcacagactatagtggactacttgttaaaactaaatcatcatggagaagt |
32774536 |
T |
|
| Q |
522 |
aa |
523 |
Q |
| |
|
|| |
|
|
| T |
32774537 |
aa |
32774538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 49 - 212
Target Start/End: Original strand, 32773817 - 32773980
Alignment:
| Q |
49 |
cttgcaggaagctattgttgatccaccatatgttgcctttgcagtaaggccagaccctggagtttgggaatatgtaaaagtgagctctgagaatctttca |
148 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| ||||||||| | ||||| | || |||||||||||||| ||| || | |||||| | || || |
|
|
| T |
32773817 |
cttgcaggaagctgttgttgatccaccatatgtagcctttgcaattaggcctaatccaggagtttgggaatacgtacgtgtcaattctgaggacctctct |
32773916 |
T |
|
| Q |
149 |
gttgaacctataacatccaccgattacctcaaattcaaggaaagaatatacgatcaaaaatggt |
212 |
Q |
| |
|
||||| ||||| || |||| |||||||||||||||||||||||| |||| || |||||||||| |
|
|
| T |
32773917 |
gttgagcctatcacccccacagattacctcaaattcaaggaaagagtatatgaccaaaaatggt |
32773980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 65 - 213
Target Start/End: Complemental strand, 6732199 - 6732050
Alignment:
| Q |
65 |
gttgatccaccatatgttgcctttgcagtaag---gccagaccctggagtttgggaatatgtaaaagtgagctctgagaatctttcagttgaacctataa |
161 |
Q |
| |
|
||||||||||| |||||||||||| |||||| || ||| ||| ||||||||| | |||| ||||||| ||||||| ||| || |||||||||||| |
|
|
| T |
6732199 |
gttgatccaccgtatgttgcctttcaagtaagccagcaggacactgaagtttgggagt--gtaagagtgagcgctgagaaccttccacttgaacctataa |
6732102 |
T |
|
| Q |
162 |
catccaccgattacctcaaattcaaggaaagaatatacgatcaaaaatggta |
213 |
Q |
| |
|
|||||||||||||| ||||||| || ||||||||||| ||| |||||||||| |
|
|
| T |
6732101 |
catccaccgattacgtcaaattaaaagaaagaatatatgataaaaaatggta |
6732050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 67 - 122
Target Start/End: Complemental strand, 6654981 - 6654926
Alignment:
| Q |
67 |
tgatccaccatatgttgcctttgcagtaaggccagaccctggagtttgggaatatg |
122 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
6654981 |
tgatccaccatatgttgcctttgcaggaaggccagatcctggagtttgggaatatg |
6654926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0286 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0286
Description:
Target: scaffold0286; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 67 - 122
Target Start/End: Complemental strand, 10584 - 10529
Alignment:
| Q |
67 |
tgatccaccatatgttgcctttgcagtaaggccagaccctggagtttgggaatatg |
122 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
10584 |
tgatccaccatatgttgcctttgcaggaaggccagatcctggagtttgggaatatg |
10529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University