View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16070_high_4 (Length: 398)
Name: NF16070_high_4
Description: NF16070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16070_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 382; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 382
Target Start/End: Complemental strand, 36313488 - 36313107
Alignment:
| Q |
1 |
acttgatgaatcatcatcacttgtattagtccatgttgatgttgatcaacctcaacctctatctattgcaccaattgtatcttcttataatgagaagata |
100 |
Q |
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| T |
36313488 |
acttgatgaatcatcatcacttgtattagtccatgttgatgttgatcaacctcaacctctatctattgcaccaattgtatcttcttataatgagaagata |
36313389 |
T |
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| Q |
101 |
cgtccagtgcttgatgctcttgaaaatctaaggcgtctcaacattgccaaagagggaatccagcttccaaccattgttgttgttggagatcaatcatctg |
200 |
Q |
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| T |
36313388 |
cgtccagtgcttgatgctcttgaaaatctaaggcgtctcaacattgccaaagagggaatccagcttccaaccattgttgttgttggagatcaatcatctg |
36313289 |
T |
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| Q |
201 |
gaaagtctagtgtccttgaatcattagctggtatcagcttgccacgtggacaaggaatttgtacaagggtacctttggttatgaggctgcaaaaccattt |
300 |
Q |
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| T |
36313288 |
gaaagtctagtgtccttgaatcattagctggtatcagcttgccacgtggacaaggaatttgtacaagggtacctttggttatgaggctgcaaaaccattt |
36313189 |
T |
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| Q |
301 |
gcttccacagccagagcttgtattggagtataatggcaaacaggttttaactgatgaagcaaatgtctctgatgctataaac |
382 |
Q |
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| T |
36313188 |
gcttccacagccagagcttgtattggagtataatggcaaacaggttttaactgatgaagcaaatgtctctgatgctataaac |
36313107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 66 - 258
Target Start/End: Complemental strand, 36290940 - 36290748
Alignment:
| Q |
66 |
ttgcaccaattgtatcttcttataatgagaagatacgtccagtgcttgatgctcttgaaaatctaaggcgtctcaacattgccaaagagggaatccagct |
165 |
Q |
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| T |
36290940 |
ttgcaccaattgtttcatcatacaatgaaaaaatacgtccagttctcgatgcccttgagaatctaaggcgtctcaacattgccaaagaaggaattcagct |
36290841 |
T |
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| Q |
166 |
tccaaccattgttgttgttggagatcaatcatctggaaagtctagtgtccttgaatcattagctggtatcagcttgccacgtggacaaggaat |
258 |
Q |
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|||||| ||||||||||||||||||||||| || |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
36290840 |
tccaacaattgttgttgttggagatcaatcttcaggaaagtccagtgtccttgaatctttagctggtatcagcttgccacgtggacaaggaat |
36290748 |
T |
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