View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16070_high_7 (Length: 296)
Name: NF16070_high_7
Description: NF16070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16070_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 17 - 274
Target Start/End: Complemental strand, 35311814 - 35311557
Alignment:
| Q |
17 |
cataggccaaggagagtgccgatcgttcagaactcgcatatacaatgaaaccaacattgacacaaacttcgcaaccttaagaaaatccaactgttctttt |
116 |
Q |
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|||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35311814 |
cataggccaaggagagtgtcgattgttcagaactcgcatatacaatgaaaccaacattgacacaaacttcgcaaccttaagaaaatccaactgttctttt |
35311715 |
T |
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| Q |
117 |
tctagtgataatgacaccaatttagcaccacttgatactctcactccaacaagttttgacaacaattattataaaaaccttgttgcaagcaaaggtctat |
216 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35311714 |
tctagtgacaatgacaccaatttagcaccacttgatactctcactccaacaagttttgacaacaattattataaaaaccttgttgcaagcaaaggtctat |
35311615 |
T |
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| Q |
217 |
tccattctgatcaagttcttttcaataatgggtctcaagatgatttggttaggagtta |
274 |
Q |
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|||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |
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| T |
35311614 |
tccattctgatcaagtccttttcaataatgggtctcaagataatttggttaggagtta |
35311557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 17 - 274
Target Start/End: Complemental strand, 35307468 - 35307214
Alignment:
| Q |
17 |
cataggccaaggagagtgccgatcgttcagaactcgcatatacaatgaaaccaacattgacacaaacttcgcaaccttaagaaaatccaactgttctttt |
116 |
Q |
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|||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||| || ||| || || |
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| T |
35307468 |
cataggccaaggagagtgccaatttttcagaaatcgcatatacaatgaaaccaacattgacacaaactttgcaaccttaaggaaatcaaattgtcctctt |
35307369 |
T |
|
| Q |
117 |
tctagtgataatgacaccaatttagcaccacttgatactctcactccaacaagttttgacaacaattattataaaaaccttgttgcaagcaaaggtctat |
216 |
Q |
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| T |
35307368 |
tctggtggt---gacaccaatttagcaccacttgatactctcactccaacaagttttgataacaattactataaaaaccttgttgcaagcaaaggtcttt |
35307272 |
T |
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| Q |
217 |
tccattctgatcaagttcttttcaataatgggtctcaagatgatttggttaggagtta |
274 |
Q |
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||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |
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| T |
35307271 |
tccattctgatcaagctcttttcaataatgggtctcaagataatttggttaggagtta |
35307214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 17 - 274
Target Start/End: Complemental strand, 35322469 - 35322215
Alignment:
| Q |
17 |
cataggccaaggagagtgccgatcgttcagaactcgcatatacaatgaaaccaacattgacacaaacttcgcaaccttaagaaaatccaactgttctttt |
116 |
Q |
| |
|
|||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||| || ||| || || |
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| T |
35322469 |
cataggccaaggagagtgccaatttttcagaaatcgcatatacaatgaaaccaacattgacacaaactttgcaaccttaaggaaattaaattgtcctctt |
35322370 |
T |
|
| Q |
117 |
tctagtgataatgacaccaatttagcaccacttgatactctcactccaacaagttttgacaacaattattataaaaaccttgttgcaagcaaaggtctat |
216 |
Q |
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||| ||| | ||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||| | |
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| T |
35322369 |
tctggtggt---gacaccaatttagcacctcttgacactctcactccaacaaattttgacaacaattactataaaaatcttgttgcaagcaaaggtcttt |
35322273 |
T |
|
| Q |
217 |
tccattctgatcaagttcttttcaataatgggtctcaagatgatttggttaggagtta |
274 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |
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| T |
35322272 |
tccattctgatcaagctcttttcaataatgggtctcaagataatttggttaggagtta |
35322215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 42 - 242
Target Start/End: Complemental strand, 35289645 - 35289448
Alignment:
| Q |
42 |
ttcagaactcgcatatacaatgaaaccaacattgacacaaacttcgcaaccttaagaaaatccaactgttctttttctagtgataatgacaccaatttag |
141 |
Q |
| |
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||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||| || ||| || |||| ||| ||||| ||||| | |
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| T |
35289645 |
ttcagaactcgtatatacaacgaaaccaacattgacacaaactttgcaaccttaagaaaatcaaattgtcctacttctggtg---gtgacataaatttgg |
35289549 |
T |
|
| Q |
142 |
caccacttgatactctcactccaacaagttttgacaacaattattataaaaaccttgttgcaagcaaaggtctattccattctgatcaagttcttttcaa |
241 |
Q |
| |
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|||| |||||| || || ||||| | ||||||||||||||| ||||| |||||||||| | ||||| || | ||||||||||||| ||||||||| |
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| T |
35289548 |
cacctcttgattctgtctctccagttacttttgacaacaattactataatgaccttgttgctaataaaggacttcttcattctgatcaagctcttttcaa |
35289449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 42 - 242
Target Start/End: Complemental strand, 35275533 - 35275336
Alignment:
| Q |
42 |
ttcagaactcgcatatacaatgaaaccaacattgacacaaacttcgcaaccttaagaaaatccaactgttctttttctagtgataatgacaccaatttag |
141 |
Q |
| |
|
||||||| ||||||| |||||||| |||||||||||| |||||| || |||||||||||| || || || ||| ||| | ||||||||||||| |
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| T |
35275533 |
ttcagaaatcgcatacacaatgaagccaacattgacagaaacttggctaccttaagaaaaagaaattgccctacctctggtggt---gacaccaatttag |
35275437 |
T |
|
| Q |
142 |
caccacttgatactctcactccaacaagttttgacaacaattattataaaaaccttgttgcaagcaaaggtctattccattctgatcaagttcttttcaa |
241 |
Q |
| |
|
|||| ||||| || |||||||||| | |||||||||||||||||||| ||||| |||| | |||||||| | ||||||||||||||||||||||| |
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| T |
35275436 |
caccctttgattctgtcactccaactaaatttgacaacaattattataaggaccttattgctaataaaggtcttctacattctgatcaagttcttttcaa |
35275337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 17 - 119
Target Start/End: Complemental strand, 35280325 - 35280223
Alignment:
| Q |
17 |
cataggccaaggagagtgccgatcgttcagaactcgcatatacaatgaaaccaacattgacacaaacttcgcaaccttaagaaaatccaactgttctttt |
116 |
Q |
| |
|
||||||||||| ||| || | || ||| ||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||| | |||||| || || |
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| T |
35280325 |
cataggccaagcagaatgtcaatttttccgaaatcgcatatacaatgaaaccaacatcgacacaaactttgcaaccttaagaaaagcaaactgtcctctt |
35280226 |
T |
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| Q |
117 |
tct |
119 |
Q |
| |
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||| |
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|
| T |
35280225 |
tct |
35280223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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