View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16070_low_10 (Length: 293)
Name: NF16070_low_10
Description: NF16070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16070_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-138; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 11 - 274
Target Start/End: Original strand, 29964831 - 29965094
Alignment:
| Q |
11 |
agaatatgaacaaagtggtgttattgatcgaactaacatcaaggcaattttactagacatgattgtggcaggaattgatacagccactaccacgattgag |
110 |
Q |
| |
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|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29964831 |
agaaaatgaacaaagtggtgttattgacagaactaacatcaaggcaattttactagacatgattgtggcaggaattgatacagccactaccacgattgag |
29964930 |
T |
|
| Q |
111 |
tgggctttatctgaacttttcagacatccaagagtgatgaaaaagcttcaagatgagatacaaaatgaagtaggaaataaaagaatggtcgaagagaatg |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29964931 |
tgggctttatctgaacttttcagacatccaagagtgatgaaaaagcttcaagatgagatacaaaatgaagtaggaaataaaagaatggtcgaagagaatg |
29965030 |
T |
|
| Q |
211 |
atttgaagaagttgaattacttagatatggtggttgatgagacattaagactttaccccgttgg |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
29965031 |
atttgaagaagttgaattacttagatatggtggttgatgagacattaagactttaccctgttgg |
29965094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 11 - 274
Target Start/End: Complemental strand, 30009967 - 30009704
Alignment:
| Q |
11 |
agaatatgaacaaagtggtgttattgatcgaactaacatcaaggcaattttactagacatgattgtggcaggaattgatacagccactaccacgattgag |
110 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30009967 |
agaaaatgaacaaagtggtgttattgacagaactaacatcaaggcaattttactagacatgattgtggcaggaattgatacagccactaccacgattgag |
30009868 |
T |
|
| Q |
111 |
tgggctttatctgaacttttcagacatccaagagtgatgaaaaagcttcaagatgagatacaaaatgaagtaggaaataaaagaatggtcgaagagaatg |
210 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30009867 |
tgggctttatctgaacttttcagacatccaagagtgatgaaaaagcttcaagatgagatacaaaatgaagtaggaaataaaagaatggtcgaagagaatg |
30009768 |
T |
|
| Q |
211 |
atttgaagaagttgaattacttagatatggtggttgatgagacattaagactttaccccgttgg |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
30009767 |
atttgaagaagttgaattacttagatatggtggttgatgagacattaagactttaccctgttgg |
30009704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 33 - 271
Target Start/End: Complemental strand, 30043865 - 30043627
Alignment:
| Q |
33 |
attgatcgaactaacatcaaggcaattttactagacatgattgtggcaggaattgatacagccactaccacgattgagtgggctttatctgaacttttca |
132 |
Q |
| |
|
||||||||||||||||||||||| ||||| || |||||||| ||||||| |||||||||| | ||||| ||||||| |||||||||||||||||||| | |
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|
| T |
30043865 |
attgatcgaactaacatcaaggctattttgctcgacatgatagtggcagcaattgatacatctgctacctcgattgaatgggctttatctgaacttttaa |
30043766 |
T |
|
| Q |
133 |
gacatccaagagtgatgaaaaagcttcaagatgagatacaaaatgaagtaggaaataaaagaatggtcgaagagaatgatttgaagaagttgaattactt |
232 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||| | |||||||||||||| || |
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| T |
30043765 |
gacatccaagagtgatgaaaaagcttcaagatgagatacaaaatgaagtaggaaataaaagaatggttaacgagaaggatctaaagaagttgaattattt |
30043666 |
T |
|
| Q |
233 |
agatatggtggttgatgagacattaagactttaccccgt |
271 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
30043665 |
agatatggtggttgatgagaccttaagactttaccccgt |
30043627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 33 - 273
Target Start/End: Original strand, 29995344 - 29995584
Alignment:
| Q |
33 |
attgatcgaactaacatcaaggcaattttactagacatgattgtggcaggaattgatacagccactaccacgattgagtgggctttatctgaacttttca |
132 |
Q |
| |
|
||||||||||||||||||||||| ||||| || |||||||| ||||||| ||| |||||| | ||||| ||||||| |||||||||||||||||||| | |
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|
| T |
29995344 |
attgatcgaactaacatcaaggctattttgctcgacatgatagtggcagcaatcgatacatctgctacctcgattgaatgggctttatctgaacttttaa |
29995443 |
T |
|
| Q |
133 |
gacatccaagagtgatgaaaaagcttcaagatgagatacaaaatgaagtaggaaataaaagaatggtcgaagagaatgatttgaagaagttgaattactt |
232 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | || ||||| ||| |||||||||||||||| || |
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|
| T |
29995444 |
gacatccaagagtgatgaaaaagcttcaagatgagatacaaaatgaagtaggaaataaaagaaagattgaggagaaagatatgaagaagttgaattattt |
29995543 |
T |
|
| Q |
233 |
agatatggtggttgatgagacattaagactttaccccgttg |
273 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
29995544 |
agatatggtggttgatgagaccttaagactttaccctgttg |
29995584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 33 - 262
Target Start/End: Complemental strand, 30068383 - 30068153
Alignment:
| Q |
33 |
attgatcgaactaacatcaaggcaattttactagacatgattgtggcaggaattgatacagccactaccacgattg-agtgggctttatctgaacttttc |
131 |
Q |
| |
|
||||||||| |||||||||| || ||||| || |||||||| ||||||| |||||||||| | ||||| ||||| | ||||||||||||| |||||| |
|
|
| T |
30068383 |
attgatcgatctaacatcaaagctattttgctcgacatgatagtggcagcaattgatacatctgctacctcgattttaatgggctttatctgcactttta |
30068284 |
T |
|
| Q |
132 |
agacatccaagagtgatgaaaaagcttcaagatgagatacaaaatgaagtaggaaataaaagaatggtcgaagagaatgatttgaagaagttgaattact |
231 |
Q |
| |
|
|| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
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|
| T |
30068283 |
aggcatccaagagtgatgaaaattcttcaagatgagatacaaaatgaagtaggaaataaaagaatggttgaagagaaggatttgaagaagttgaattact |
30068184 |
T |
|
| Q |
232 |
tagatatggtggttgatgagacattaagact |
262 |
Q |
| |
|
||||||||||||||||||| || |||||||| |
|
|
| T |
30068183 |
tagatatggtggttgatgaaaccttaagact |
30068153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 33 - 274
Target Start/End: Original strand, 30007133 - 30007374
Alignment:
| Q |
33 |
attgatcgaactaacatcaaggcaattttactagacatgattgtggcaggaattgatacagccactaccacgattgagtgggctttatctgaacttttca |
132 |
Q |
| |
|
||||||||||||||||||||||| ||||| || |||||||| | |||| | || ||||| | |||||||||||||||||||||||||||||||| | | |
|
|
| T |
30007133 |
attgatcgaactaacatcaaggctattttgctcgacatgatagcggcatcagttcatacatctgctaccacgattgagtgggctttatctgaacttctaa |
30007232 |
T |
|
| Q |
133 |
gacatccaagagtgatgaaaaagcttcaagatgagatacaaaatgaagtaggaaataaaagaatggtcgaagagaatgatttgaagaagttgaattactt |
232 |
Q |
| |
|
| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||| |||||||| |
|
|
| T |
30007233 |
ggcattcaagagtgatgaaaattcttcaagatgagatacaaaatgaagtaggaaataaaagaatggttgaagagaaggatctgaagaagtttaattactt |
30007332 |
T |
|
| Q |
233 |
agatatggtggttgatgagacattaagactttaccccgttgg |
274 |
Q |
| |
|
||||||||| |||||||| || ||||||||||| || ||||| |
|
|
| T |
30007333 |
agatatggttgttgatgaaaccttaagactttatcctgttgg |
30007374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 33 - 263
Target Start/End: Original strand, 29944652 - 29944882
Alignment:
| Q |
33 |
attgatcgaactaacatcaaggcaattttactagacatgattgtggcaggaattgatacagccactaccacgattgagtgggctttatctgaacttttca |
132 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||||| |||||||| | || |||| | ||||||| ||||||||||||||||| |||||||| | |
|
|
| T |
29944652 |
attgatcgaactaacatcaaagctattttactagacatggttgtggcatcatttagtacatctgctaccacaattgagtgggctttatccgaacttttaa |
29944751 |
T |
|
| Q |
133 |
gacatccaagagtgatgaaaaagcttcaagatgagatacaaaatgaagtaggaaataaaagaatggtcgaagagaatgatttgaagaagttgaattactt |
232 |
Q |
| |
|
| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||| ||||| || ||||||||||| || |||||||| |
|
|
| T |
29944752 |
ggcatccaagagtgatgaaaaatcttcaagatgaaatacaaaatgaagtaggaaataagagaatggttgaagaaaaggatttgaagaattttaattactt |
29944851 |
T |
|
| Q |
233 |
agatatggtggttgatgagacattaagactt |
263 |
Q |
| |
|
|||||||||||||||||| || ||||||||| |
|
|
| T |
29944852 |
agatatggtggttgatgaaactttaagactt |
29944882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 33 - 273
Target Start/End: Original strand, 29953585 - 29953825
Alignment:
| Q |
33 |
attgatcgaactaacatcaaggcaattttactagacatgattgtggcaggaattgatacagccactaccacgattgagtgggctttatctgaacttttca |
132 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||| | ||||| |||||| ||||||||||| |||||| | | |
|
|
| T |
29953585 |
attgatcgaactaacatcaaggcaattttactagacttgactgtggcagcaattgatacatctgctaccgtgattgaatgggctttatccgaacttctaa |
29953684 |
T |
|
| Q |
133 |
gacatccaagagtgatgaaaaagcttcaagatgagatacaaaatgaagtaggaaataaaagaatggtcgaagagaatgatttgaagaagttgaattactt |
232 |
Q |
| |
|
|||||||||| || ||||||| ||||||||||||||||||||||||||||||||| |||||||| | |||||||| ||||| |||| || | |||||| |
|
|
| T |
29953685 |
gacatccaagggtaatgaaaatccttcaagatgagatacaaaatgaagtaggaaatgaaagaatgattgaagagaaagatttagagaacttaagttactt |
29953784 |
T |
|
| Q |
233 |
agatatggtggttgatgagacattaagactttaccccgttg |
273 |
Q |
| |
|
||| ||||||||| |||| || |||||||||||||| |||| |
|
|
| T |
29953785 |
agagatggtggttcatgaaactttaagactttaccctgttg |
29953825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 29 - 273
Target Start/End: Original strand, 29946620 - 29946864
Alignment:
| Q |
29 |
tgttattgatcgaactaacatcaaggcaattttactagacatgattgtggcaggaattgatacagccactaccacgattgagtgggcttt-atctgaact |
127 |
Q |
| |
|
||||||||||||| | ||||| |||||| | |||||||||| | || |||||| |||||| ||| | ||||| ||||||| |||||||| ||||||||| |
|
|
| T |
29946620 |
tgttattgatcgaccaaacattaaggca-tattactagacacggttatggcagcaattgaaacatctgctaccgcgattgaatgggcttttatctgaact |
29946718 |
T |
|
| Q |
128 |
tttcagacatccaagagtgatgaaaaagcttcaagatgagatacaaaatgaagtaggaaataaaagaatggtcgaagagaatgatttgaagaagttgaat |
227 |
Q |
| |
|
||| || |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| | | |
|
|
| T |
29946719 |
tttaaggaatccaagagtgatgaaaacccttcaagatgatatacaaaatgaagtaggaaataaaagaatggtcgaagagaaagatttagagaagttaagt |
29946818 |
T |
|
| Q |
228 |
tacttagatatggtggttgatgagacattaagactttaccccgttg |
273 |
Q |
| |
|
|||||||||||||||||| |||| || |||||||||||||| |||| |
|
|
| T |
29946819 |
tacttagatatggtggttcatgaaactttaagactttaccctgttg |
29946864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 33 - 265
Target Start/End: Original strand, 30001017 - 30001249
Alignment:
| Q |
33 |
attgatcgaactaacatcaaggcaattttactagacatgattgtggcaggaattgatacagccactaccacgattgagtgggctttatctgaacttttca |
132 |
Q |
| |
|
||||||||||| | ||||||||| ||||| || |||||||| | |||| |||||||||| | | | | ||| ||||||||||||||||||||||| | |
|
|
| T |
30001017 |
attgatcgaacgatcatcaaggctattttgctcgacatgataggggcatcaattgatacatcttcaaacgtgatagagtgggctttatctgaacttttaa |
30001116 |
T |
|
| Q |
133 |
gacatccaagagtgatgaaaaagcttcaagatgagatacaaaatgaagtaggaaataaaagaatggtcgaagagaatgatttgaagaagttgaattactt |
232 |
Q |
| |
|
| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||| ||||| || ||||||||||| || |||||| | |
|
|
| T |
30001117 |
ggcatccaagagtgatgaaaattcttcaagatgaaatacaaaatgaagtaggaaataagagaatggttgaagaaaaggatttgaagaattttaattacct |
30001216 |
T |
|
| Q |
233 |
agatatggtggttgatgagacattaagacttta |
265 |
Q |
| |
|
|||||||||||||||||| || ||||||||||| |
|
|
| T |
30001217 |
agatatggtggttgatgaaaccttaagacttta |
30001249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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