View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16070_low_11 (Length: 216)
Name: NF16070_low_11
Description: NF16070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16070_low_11 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 169; Significance: 8e-91; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 19 - 216
Target Start/End: Complemental strand, 34974632 - 34974435
Alignment:
| Q |
19 |
atcacttcaaagaattgcatgtcaaagcaaatcaannnnnnncttagcagcatgtttttgtcgcttcatcctcctaagagcaaacccgttatgggttcaa |
118 |
Q |
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| T |
34974632 |
atcacttcaaagaattgcatgtcaaaccaaatcaatttttttcttagcagcatgtttttgtcgcttcatcctcctaagagcaaacccattatgggttcaa |
34974533 |
T |
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| Q |
119 |
attgtatatttcacatctctttcaactttgggttttggatttctcaaagttctaaaacctttaggtgaaacacctaaaaatttagatttgttcttcac |
216 |
Q |
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| T |
34974532 |
attgtatatttcacatctctttcaactttgggttttggatttctcaaagttctaaaacctttaggtgaaacacctaaaaatttagatttgttcttcac |
34974435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 64 - 216
Target Start/End: Complemental strand, 34956125 - 34955973
Alignment:
| Q |
64 |
agcagcatgtttttgtcgcttcatcctcctaagagcaaacccgttatgggttcaaattgtatatttcacatctctttcaactttgggttttggatttctc |
163 |
Q |
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| T |
34956125 |
agcagcatgtttatatcgattcatcctcctaagatcaaacccactatgtgttcaaattgtatatttcatatccatttcaactttgggttttggatttctc |
34956026 |
T |
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| Q |
164 |
aaagttctaaaacctttaggtgaaacacctaaaaatttagatttgttcttcac |
216 |
Q |
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| T |
34956025 |
aaagctctaaaacccttaggtcaaacacaaaaaaatttagatttgttcttcac |
34955973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 70 - 216
Target Start/End: Complemental strand, 35035308 - 35035159
Alignment:
| Q |
70 |
atgtttttgtcgcttcatcctcctaagagcaaacccgttatgggttcaaattgtatatttcacatctctttcaactttgggttttggatttctcaaagtt |
169 |
Q |
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|||||||| |||||||||||||||||||||||| || ||||| ||||||||| ||||||||| ||| |||| ||| || |||||||||||||||| | |
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| T |
35035308 |
atgtttttatcgcttcatcctcctaagagcaaatccattatgtgttcaaattctatatttcatctctatttccttttttgggtttggatttctcaaagct |
35035209 |
T |
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| Q |
170 |
ctaaaacctttaggtgaaa---cacctaaaaatttagatttgttcttcac |
216 |
Q |
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| T |
35035208 |
ctaaaccctttatatcaaacatcacctaaaaacttagatttgttcttcac |
35035159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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