View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16071_low_1 (Length: 845)
Name: NF16071_low_1
Description: NF16071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16071_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 654; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 654; E-Value: 0
Query Start/End: Original strand, 1 - 795
Target Start/End: Original strand, 41980809 - 41981601
Alignment:
| Q |
1 |
agcgccccaatgatcaccggagccgcatgaaactctaccgtagttaacgagaatgaagttttctccggtggagttagaatcatacgaagcggaatttaca |
100 |
Q |
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| T |
41980809 |
agcgccccaatgatcaccggagccgcatgaaactctaccgtagttaacgagaatgaagttttctccggtggagttagaatcatacgaagcggaatttaca |
41980908 |
T |
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| Q |
101 |
ggaatgagttcgattgatgagatgatcggagcatcggtagcgaagccatagaagcaaagatcagcggcggagggagtgtgaagaaaagcgaaaagatcag |
200 |
Q |
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| T |
41980909 |
ggaatgagttcgattgatgagatgatcggagcatcggtagcgaagccgtagaagcaaagatcagcggcggagggagtgtgaagaaaagcgaaaagatcag |
41981008 |
T |
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| Q |
201 |
cataagcgccgtcgcgtgctgtggattcaggccagggagaacgccagttgaaaatgatggtggaggagagtgcgacatcgaaggaaggaggacgagactt |
300 |
Q |
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| T |
41981009 |
cataagcgccgtcgcgtgctgtggattcaggccagggagaacgccagttgaaaatgatggtggaggagagtgcgacgtcgaaggaaggaggacgagactt |
41981108 |
T |
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| Q |
301 |
tgcgtcgtagttgtcatagacggtgaaggtgcggaggaggtagcgggcggagggaagtgaagggaaggagtagcag-nnnnnnngccggaggaggaggaa |
399 |
Q |
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| T |
41981109 |
tgcgtcgtagttgtcgtagacggtgaaggtgcggaggaggtagcgggcggagggaagtgaagggaaggagtagcagttttttttgccggaggaggaggaa |
41981208 |
T |
|
| Q |
400 |
gggaagaagcggagggttttttctgaggggaggttgaagcggagtggctccgagacggtggtggtggcgccgccggtgtagtaacggtcggagagccatg |
499 |
Q |
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| T |
41981209 |
gggaagaagcggagggttttttctgaggggaggttgaagcggagtggctccgagacggtggtggtggccccgccggtgtagtaacggtcggagagccatg |
41981308 |
T |
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| Q |
500 |
ttgtattgaaggggtctgttatgtttgttgaagtgccgcagttaatgtggtatgaggacaagttacctgaaaatattttgaatggaaatagttaatagta |
599 |
Q |
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| T |
41981309 |
ttgtattgaaggggtctgttatgtttgttgaagtgccgcagttaatgtggtatgaggacaagttacctgaaaatattttgaatggaaatagttaatagta |
41981408 |
T |
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| Q |
600 |
atttnnnnnnnnnnngtgtttcttcgataagtttgtcgaaattacgatgagttggtgtggaatttcattttgcaaaagttcattttgtatcttttgcaag |
699 |
Q |
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| T |
41981409 |
att--aaaaaaaaaaatgtttctttgataagtttgtcgaaattacgatgagttggtgtcgaatttcattttgcaaaagttcattttgtat-ttttgcaag |
41981505 |
T |
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| Q |
700 |
atgatatgagtcacttacgtatatttcgacaaactcacctgataccgaacatacaaaagtattcggtagagtagtagttaccagaggaaaaagatg |
795 |
Q |
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| T |
41981506 |
atggtatgactcacttacgtatatttcgataaactcatttgatatcgaacatacaaaagtactcggtagagtagtagttaccaaagggaaaagatg |
41981601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 462 - 551
Target Start/End: Complemental strand, 22083587 - 22083498
Alignment:
| Q |
462 |
ggtggcgccgccggtgtagtaacggtcggagagccatgttgtattgaaggggtctgttatgtttgttgaagtgccgcagttaatgtggta |
551 |
Q |
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| T |
22083587 |
ggtggtgccgccggtgaagaaacggtcggagagccaagtagtgttgaatgagtcggtggtgttagttggagtgccgcagtcaatgtggta |
22083498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 278 - 345
Target Start/End: Complemental strand, 22083769 - 22083702
Alignment:
| Q |
278 |
tcgaaggaaggaggacgagactttgcgtcgtagttgtcatagacggtgaaggtgcggaggaggtagcg |
345 |
Q |
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| T |
22083769 |
tcgaaggaaggaggatgcgacttgccgtcgtagttgtcgtagacgacgaaggtgcgaatgaggtagcg |
22083702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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