View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16071_low_2 (Length: 825)
Name: NF16071_low_2
Description: NF16071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16071_low_2 |
 | |
|
| [»] scaffold0188 (5 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 794; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 794; E-Value: 0
Query Start/End: Original strand, 15 - 816
Target Start/End: Complemental strand, 50981213 - 50980412
Alignment:
| Q |
15 |
agatctctcttattcagataactttccaaatcatgacaatgttaggtgggatacttggggaaggtttgtagaaaggagcacggcttatcagccgtggata |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50981213 |
agatctctcttattcagataactttccaaatcatgacaatgttaggtgggatacttggggaaggtttgtagaaaggagcacggcttatcagccgtggata |
50981114 |
T |
|
| Q |
115 |
tggactgtaggaaaccatgaaattgattttgccccagaaattggcgaaaccaaaccattcaaaccttattcgcaccgataccacactccttataaagcat |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50981113 |
tggactgtaggaaaccatgaaattgattttgccccagaaattggcgaaaccaaaccattcaaaccttattcgcaccgataccacactccttataaagcat |
50981014 |
T |
|
| Q |
215 |
cacaaagtacttcacccttttggtattctatcagaagagcttcagctcacatcattgtcttggcctcgtattcagcatatggaaaatatacaccacagta |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
50981013 |
cacaaagtacttcacccttttggtattctatcagaagagcttcagctcacatcattgtcttggcctcgtattcaggatatggaaaatatacaccacagta |
50980914 |
T |
|
| Q |
315 |
ccaatggcttgaacaagagctacctaaagttaacaggacagaaactccttggttgattgttctaatgcattcaccttggtataatagcaacaatcaacat |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50980913 |
ccaatggcttgaacaagagctacctaaagttaacaggacagaaactccttggttgattgttctaatgcattcaccttggtataatagcaacaatcaacat |
50980814 |
T |
|
| Q |
415 |
tatatggaaggggagacaatgagagtaatgtatgagccatggtttgttaagtacaaggttgatgttgtgtatgctggacatgtgcatgcctatgaaagaa |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50980813 |
tatatggaaggggagacaatgagagtaatgtatgagccatggtttgttaagtacaaggttgatgttgtgtatgctggacatgtgcatgcctatgaaagaa |
50980714 |
T |
|
| Q |
515 |
ccgaacgtgtgtcgaatattgcatataatgttgtgaatggtatttgcactcctataaaagatcaatcagctcctgtatacataaccattggagatggagg |
614 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50980713 |
ccgaacgtgtgtcgaatattgcatataatgttgtgaatggtatttgcactcctataaaagatcaatcagctcctgtatacataaccattggagatggagg |
50980614 |
T |
|
| Q |
615 |
gaaccttggaggcatggaaaccaacatgacagaaccacagccagagtactcagcattcagagaggctagctttggacatgccattttcgacataaagaac |
714 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50980613 |
gaaccttggaggcatggaaaccaacatgacagaaccacagccagagtactcagcattcagagaggctagctttggacatgccattttcgacataaagaac |
50980514 |
T |
|
| Q |
715 |
agaacacatgctcactatagctggcacagaaatcaagatggttattcggttgaggctgattcccattggtttttcaacagattttggcaaccagttgatg |
814 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
50980513 |
agaacacatgctcactatagctggcacagaaatcaagatggttattcggttgaggctgattcccattggtttttcaacagattttggcatccagttgatg |
50980414 |
T |
|
| Q |
815 |
at |
816 |
Q |
| |
|
|| |
|
|
| T |
50980413 |
at |
50980412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 626 - 816
Target Start/End: Complemental strand, 50965152 - 50964961
Alignment:
| Q |
626 |
gcatggaaaccaacatgacagaaccacagccagagtac-tcagcattcagagaggctagctttggacatgccattttcgacataaagaacagaacacatg |
724 |
Q |
| |
|
|||| |||||||||||| ||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50965152 |
gcatagaaaccaacatgtcagaaccacaggcagagtacattagcattcagagaggctagctttggacatgccattttcgacataaagaacagaacacatg |
50965053 |
T |
|
| Q |
725 |
ctcactatagctggcacagaaatcaagatggttattcggttgaggctgattcccattggtttttcaacagattttggcaaccagttgatgat |
816 |
Q |
| |
|
||||||||| || |||||||||||| |||||||||| | ||||| ||||||| |||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
50965052 |
ctcactataactatcacagaaatcaaaatggttattctgatgaggttgattccaattggttttttaacagattttggcacccagttgatgat |
50964961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 156; Significance: 2e-82; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 295 - 510
Target Start/End: Original strand, 13640233 - 13640448
Alignment:
| Q |
295 |
ggaaaatatacaccacagtaccaatggcttgaacaagagctacctaaagttaacaggacagaaactccttggttgattgttctaatgcattcaccttggt |
394 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
13640233 |
ggaaaatatacaccacaatacaaatggcttgaacaggagctaccaaaagttaacaggacagaaactccttggttgattgttctcatgcattcaccttggt |
13640332 |
T |
|
| Q |
395 |
ataatagcaacaatcaacattatatggaaggggagacaatgagagtaatgtatgagccatggtttgttaagtacaaggttgatgttgtgtatgctggaca |
494 |
Q |
| |
|
|||||||| ||||| | ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |
|
|
| T |
13640333 |
ataatagctacaattatcattacatggaaggggaatcaatgagagtaatgtatgagccatggtttgttaagtacaaggttgatgtcgtgtatgctggcca |
13640432 |
T |
|
| Q |
495 |
tgtgcatgcctatgaa |
510 |
Q |
| |
|
||| || ||||||||| |
|
|
| T |
13640433 |
tgtccacgcctatgaa |
13640448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 639 - 816
Target Start/End: Original strand, 13641257 - 13641434
Alignment:
| Q |
639 |
catgacagaaccacagccagagtactcagcattcagagaggctagctttggacatgccattttcgacataaagaacagaacacatgctcactatagctgg |
738 |
Q |
| |
|
||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
13641257 |
catgacagaaccacaaccagagtactcagcatacagagaggccagctttggacatgccatttttgacataaagaacagaacacatgctcactacagctgg |
13641356 |
T |
|
| Q |
739 |
cacagaaatcaagatggttattcggttgaggctgattcccattggtttttcaacagattttggcaaccagttgatgat |
816 |
Q |
| |
|
|| || |||||||||||||| || |||||||||||||| |||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
13641357 |
cataggaatcaagatggttactctgttgaggctgattctcattggttcttcaacagattttggcacccagttgatgat |
13641434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 517 - 627
Target Start/End: Original strand, 13640665 - 13640775
Alignment:
| Q |
517 |
gaacgtgtgtcgaatattgcatataatgttgtgaatggtatttgcactcctataaaagatcaatcagctcctgtatacataaccattggagatggaggga |
616 |
Q |
| |
|
||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13640665 |
gaacgtgtgtccaatgttgcatataatgttgtaaatggtatttgcactcctataaaagatcaatcagctcctgtatacataaccattggagatggaggga |
13640764 |
T |
|
| Q |
617 |
accttggaggc |
627 |
Q |
| |
|
|||||| |||| |
|
|
| T |
13640765 |
accttgaaggc |
13640775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 15 - 157
Target Start/End: Original strand, 13638773 - 13638915
Alignment:
| Q |
15 |
agatctctcttattcagataactttccaaatcatgacaatgttaggtgggatacttggggaaggtttgtagaaaggagcacggcttatcagccgtggata |
114 |
Q |
| |
|
||||||||| ||| ||||||||| || ||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||| ||||||||| |
|
|
| T |
13638773 |
agatctctcatatgcagataactacccgaatcatgacaatgttaggtgggatacttggggaagatttgcagaaaggagcgttgcttatcaaccgtggata |
13638872 |
T |
|
| Q |
115 |
tggactgtaggaaaccatgaaattgattttgccccagaaattg |
157 |
Q |
| |
|
|||||||| |||||||||||| |||||||||| |||||||||| |
|
|
| T |
13638873 |
tggactgttggaaaccatgaacttgattttgctccagaaattg |
13638915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 160 - 296
Target Start/End: Original strand, 13639066 - 13639202
Alignment:
| Q |
160 |
gaaaccaaaccattcaaaccttattcgcaccgataccacactccttataaagcatcacaaagtacttcacccttttggtattctatcagaagagcttcag |
259 |
Q |
| |
|
||||| ||||||||||| ||||| ||||||||||||| |||||||| |||||||| |||||||| || ||||||||||||||||||| |||||||||| |
|
|
| T |
13639066 |
gaaacaaaaccattcaagccttactcgcaccgataccgtactccttacaaagcatcgcaaagtacctcgcccttttggtattctatcaagagagcttcag |
13639165 |
T |
|
| Q |
260 |
ctcacatcattgtcttggcctcgtattcagcatatgg |
296 |
Q |
| |
|
||||||||||||| ||||| || |||||||||||||| |
|
|
| T |
13639166 |
ctcacatcattgtgttggcttcatattcagcatatgg |
13639202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0188 (Bit Score: 131; Significance: 2e-67; HSPs: 5)
Name: scaffold0188
Description:
Target: scaffold0188; HSP #1
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 295 - 513
Target Start/End: Original strand, 10983 - 11201
Alignment:
| Q |
295 |
ggaaaatatacaccacagtaccaatggcttgaacaagagctacctaaagttaacaggacagaaactccttggttgattgttctaatgcattcaccttggt |
394 |
Q |
| |
|
||||||||||||||||| ||| ||||||||| |||||||||| | ||||||||||| | ||||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
10983 |
ggaaaatatacaccacaatacgcgtggcttgaagaagagctaccgagagttaacaggaaaaaaactccgtggttgattgttctcatgcattcaccttggt |
11082 |
T |
|
| Q |
395 |
ataatagcaacaatcaacattatatggaaggggagacaatgagagtaatgtatgagccatggtttgttaagtacaaggttgatgttgtgtatgctggaca |
494 |
Q |
| |
|
|||||||||||| | ||||| ||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||| || |
|
|
| T |
11083 |
ataatagcaacagctatcattacatggaaggggaaacaatgagagtaatgtttgagtcatggtttgttaagtacaaggttgatgttgtgtttgctggcca |
11182 |
T |
|
| Q |
495 |
tgtgcatgcctatgaaaga |
513 |
Q |
| |
|
||| ||||||||||||||| |
|
|
| T |
11183 |
tgtacatgcctatgaaaga |
11201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0188; HSP #2
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 167 - 296
Target Start/End: Original strand, 10397 - 10526
Alignment:
| Q |
167 |
aaccattcaaaccttattcgcaccgataccacactccttataaagcatcacaaagtacttcacccttttggtattctatcagaagagcttcagctcacat |
266 |
Q |
| |
|
|||||||||| |||| ||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || || |
|
|
| T |
10397 |
aaccattcaagcctttttcgcaccgataccaaacgccgtataaagcatcacaaagtacttcacccttttggtattctatcaaaagagcttcagcacatat |
10496 |
T |
|
| Q |
267 |
cattgtcttggcctcgtattcagcatatgg |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
10497 |
cattgtcttggcctcgtattcagcatatgg |
10526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0188; HSP #3
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 15 - 157
Target Start/End: Original strand, 10095 - 10237
Alignment:
| Q |
15 |
agatctctcttattcagataactttccaaatcatgacaatgttaggtgggatacttggggaaggtttgtagaaaggagcacggcttatcagccgtggata |
114 |
Q |
| |
|
||||||||| ||| ||||||||| || ||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||| ||||||||| |
|
|
| T |
10095 |
agatctctcatatgcagataactacccgaatcatgacaatgttaggtgggatacttggggaagatttgcagaaaggagcgttgcttatcaaccgtggata |
10194 |
T |
|
| Q |
115 |
tggactgtaggaaaccatgaaattgattttgccccagaaattg |
157 |
Q |
| |
|
|||||||| |||||||||||| |||||||||| |||||||||| |
|
|
| T |
10195 |
tggactgttggaaaccatgaacttgattttgctccagaaattg |
10237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0188; HSP #4
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 647 - 816
Target Start/End: Original strand, 11644 - 11813
Alignment:
| Q |
647 |
aaccacagccagagtactcagcattcagagaggctagctttggacatgccattttcgacataaagaacagaacacatgctcactatagctggcacagaaa |
746 |
Q |
| |
|
|||||||||| |||||||| ||||| ||||| || |||||||||||||| ||||| ||||||||||| || ||||||||| ||||||||||||| ||||| |
|
|
| T |
11644 |
aaccacagccggagtactcggcatttagagaagccagctttggacatgcaatttttgacataaagaataggacacatgcttactatagctggcatagaaa |
11743 |
T |
|
| Q |
747 |
tcaagatggttattcggttgaggctgattcccattggtttttcaacagattttggcaaccagttgatgat |
816 |
Q |
| |
|
|||||||||| || | ||| || |||||||| |||||||||||||||||||||| | || ||||||||| |
|
|
| T |
11744 |
tcaagatggtgatgctgttaagagtgattccctttggtttttcaacagattttggaacccggttgatgat |
11813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0188; HSP #5
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 517 - 638
Target Start/End: Original strand, 11288 - 11409
Alignment:
| Q |
517 |
gaacgtgtgtcgaatattgcatataatgttgtgaatggtatttgcactcctataaaagatcaatcagctcctgtatacataaccattggagatggaggga |
616 |
Q |
| |
|
|||||||| || ||||||||||||||| | || |||||||||||| ||||| ||||||||| ||||||||| |||||||||| ||| ||||||||||||| |
|
|
| T |
11288 |
gaacgtgtctcaaatattgcatataatatcgtaaatggtatttgcgctcctgtaaaagatctatcagctccggtatacataaacatcggagatggaggga |
11387 |
T |
|
| Q |
617 |
accttggaggcatggaaaccaa |
638 |
Q |
| |
|
| ||| |||| ||| |||||| |
|
|
| T |
11388 |
atattgaaggcttggcaaccaa |
11409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 8e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 199 - 296
Target Start/End: Complemental strand, 10478895 - 10478798
Alignment:
| Q |
199 |
actccttataaagcatcacaaagtacttcacccttttggtattctatcagaagagcttcagctcacatcattgtcttggcctcgtattcagcatatgg |
296 |
Q |
| |
|
||||||||||||||||| ||||||| ||| ||||| |||||||||| ||||||||||| ||||| |||||||| ||||| |||||||||||||| |
|
|
| T |
10478895 |
actccttataaagcatcgcaaagtagcccacacttttcatattctatcaagagagcttcagcacacattattgtcttagcctcatattcagcatatgg |
10478798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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