View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16071_low_3 (Length: 647)

Name: NF16071_low_3
Description: NF16071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16071_low_3
NF16071_low_3
[»] chr7 (7 HSPs)
chr7 (14-626)||(31098476-31099082)
chr7 (14-449)||(29955006-29955435)
chr7 (449-625)||(29954800-29954976)
chr7 (17-245)||(3061258-3061484)
chr7 (14-154)||(5091763-5091901)
chr7 (14-154)||(32657518-32657655)
chr7 (14-144)||(3066460-3066587)
[»] chr1 (7 HSPs)
chr1 (16-449)||(26210635-26211070)
chr1 (449-626)||(26210432-26210605)
chr1 (14-154)||(45506294-45506432)
chr1 (14-154)||(48959296-48959434)
chr1 (14-154)||(2051058-2051196)
chr1 (14-154)||(36870317-36870455)
chr1 (15-98)||(13928484-13928564)
[»] chr8 (3 HSPs)
chr8 (14-245)||(18489428-18489657)
chr8 (17-154)||(409383-409518)
chr8 (19-70)||(19958732-19958781)
[»] chr2 (14 HSPs)
chr2 (14-154)||(27999410-27999548)
chr2 (14-154)||(28090144-28090282)
chr2 (14-154)||(28096467-28096605)
chr2 (14-154)||(1918661-1918799)
chr2 (14-154)||(19820488-19820626)
chr2 (14-154)||(19840709-19840847)
chr2 (14-154)||(5000592-5000730)
chr2 (14-154)||(21590404-21590542)
chr2 (14-154)||(42110888-42111026)
chr2 (14-154)||(205037-205175)
chr2 (19-154)||(5012267-5012400)
chr2 (14-154)||(36439408-36439545)
chr2 (454-560)||(35849156-35849262)
chr2 (92-144)||(13900802-13900854)
[»] chr3 (8 HSPs)
chr3 (14-156)||(11824682-11824822)
chr3 (14-154)||(31484341-31484479)
chr3 (14-154)||(33005275-33005413)
chr3 (20-154)||(857499-857631)
chr3 (14-154)||(36090226-36090364)
chr3 (14-154)||(35713870-35714008)
chr3 (14-154)||(49565210-49565348)
chr3 (14-154)||(43508922-43509060)
[»] scaffold0160 (1 HSPs)
scaffold0160 (18-154)||(37161-37295)
[»] chr4 (4 HSPs)
chr4 (14-154)||(42345967-42346105)
chr4 (14-154)||(14147702-14147840)
chr4 (14-154)||(53286495-53286633)
chr4 (14-71)||(29362822-29362877)
[»] chr6 (4 HSPs)
chr6 (14-143)||(29370902-29371029)
chr6 (14-143)||(29373457-29373584)
chr6 (14-154)||(24457231-24457369)
chr6 (14-87)||(33006535-33006606)
[»] chr5 (2 HSPs)
chr5 (14-156)||(10038933-10039073)
chr5 (92-144)||(20108398-20108450)
[»] scaffold0374 (1 HSPs)
scaffold0374 (14-154)||(891-1029)


Alignment Details
Target: chr7 (Bit Score: 489; Significance: 0; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 14 - 626
Target Start/End: Complemental strand, 31099082 - 31098476
Alignment:
Q  14 gcatagggggatcaaaagtcgggtaggggatactcttgtgtgaaacctatcagtcaaccgtacatcaaactgtctgtaacccacaaaaatcaaggtaatc 113  Q
    |||||| ||||||||||| |||||| ||||||||||||||  |||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||    
T  31099082 gcatagagggatcaaaagccgggtatgggatactcttgtg--aaacctatcagtcaaccgtatatcaaactgtctgtcacccacaaaaaccaaggtaatc 31098985  T
Q  114 taggcaccaagaccgattccgtaaaagtcacaaatcgctttactataacattttgttaggataacactatggnnnnnnnatatagtataatcatcactgt 213  Q
    ||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||       ||||||||||||||| |||||    
T  31098984 taggcaccaagaccgattctgtaaaagtcacgaatcgctttactataacattttattaggataacactatggtttttttatatagtataatcatgactgt 31098885  T
Q  214 gacaaacgaaatttgaaattgacaaagaaataattatgtaattcaagtatgtgaattttaccatgagggctactacgaaagacttgatgatgctttgtaa 313  Q
    |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31098884 gacaaacgaaatttgaaattgacaaagaaatatttctgtaattcaagtatgtgaattttaccatgagggctactacgaaagacttgatgatgctttgtaa 31098785  T
Q  314 attaaagtgtacatatatattaatataagagcatattagtcacgttag-aaacttaaaatacatttctggaaattctttcagatgaatatatattaatac 412  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  31098784 attaaagtgtacatatatattaatataagagcatattagtcacgttagaaaacataaaatacatttctggaaattctttcagatgaatatatattaatac 31098685  T
Q  413 aacatcaagaaaaaatgtgttttggttgattttgttcaaagatgcctctagtgtttctagattctatatgacaaaatactttaaccaaaggaatagcacc 512  Q
    ||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31098684 aa---caagaaaaaatgtgttttggttgattttgttcaaagatgcctctagtgtttctagattctatatgacaaaatactttaaccaaaggaatagcacc 31098588  T
Q  513 aaggaaaattataaggagtgcacacttatattaggtcgatgaatatatccaaaaatgactataaatacatacacacagtttcattaaaagtgacaaataa 612  Q
    |||| ||||||||||||||||||| ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31098587 aaggcaaattataaggagtgcacaattatatta--tcgatgaatatatccaaaaatgactataaatacatacacacagtttcattaaaagtgacaaataa 31098490  T
Q  613 ctaatagtataaac 626  Q
    ||||||||||||||    
T  31098489 ctaatagtataaac 31098476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 14 - 449
Target Start/End: Complemental strand, 29955435 - 29955006
Alignment:
Q  14 gcatagggggatcaaaagtcgggtaggggatactcttgtgtgaaacctatcagtcaaccgtacatcaaactgtctgtaacccacaaaaatcaaggtaatc 113  Q
    |||||||||||||||||||||||||||||||| |||||||  |||||||||||||||||||| ||||||||||| || ||||||||||| |||| |||||    
T  29955435 gcatagggggatcaaaagtcgggtaggggatattcttgtg--aaacctatcagtcaaccgtatatcaaactgtccgtcacccacaaaaaccaagataatc 29955338  T
Q  114 taggcaccaagaccgattccgtaaaagtcacaaatcgctttactataacattttgttaggataacactatggnnnnnnna------tatagtataatcat 207  Q
     | |||||||||||||||||||||||||||| |||||||||||||||||||||| |||| | ||| ||||||              ||||||||||||||    
T  29955337 caagcaccaagaccgattccgtaaaagtcacgaatcgctttactataacattttattagtacaacgctatggttttttttatatagtatagtataatcat 29955238  T
Q  208 cactgtgacaaacgaaatttgaaattgacaaagaaataattatgtaattcaagtatgtgaattttaccatgagggctactacgaaagacttgatgatgct 307  Q
     ||||||||||||||||||||||||||||||||||||| |  ||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||     
T  29955237 tactgtgacaaacgaaatttgaaattgacaaagaaatattattgtaattcaagtatgtgaatttttccatgagggctactacggaagacttgttgatgcg 29955138  T
Q  308 ttgtaaattaaagtgtacatatatattaatataagagcatattagtcacgttaga-aacttaaaatacatttctggaaattctttcagatgaatatatat 406  Q
    |||||||||||||| ||||||||||||||||           |||||| |||| | |||||||||||||||| |||||||||||| ||||||||||||||    
T  29955137 ttgtaaattaaagtttacatatatattaata-----------tagtcatgttacagaacttaaaatacatttatggaaattcttttagatgaatatatat 29955049  T
Q  407 taatacaacatcaagaaaaaatgtgttttggttgattttgttc 449  Q
    |||||||||||||||||||| ||||||||||||||||||||||    
T  29955048 taatacaacatcaagaaaaagtgtgttttggttgattttgttc 29955006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 449 - 625
Target Start/End: Complemental strand, 29954976 - 29954800
Alignment:
Q  449 caaagatgcctctagtgtttctagattctatatgacaaaatactttaaccaaaggaatagcaccaaggaaaattataaggagtgcacacttatattaggt 548  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||| |||||||||||    
T  29954976 caaagatgcctctagtgtttctagattctatatgacaaaatactttaaccaatggaatagcaccaaggcaaattataaggagagcacagttatattaggt 29954877  T
Q  549 cgatgaatatatccaaaaatgactataaatacatacacacagtttcattaaaagtgacaaataactaatagtataaa 625  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  29954876 cgatgaatatatccaaaaatgactatacatacatacacacagtttcattaaaagtgacaaataactaatagtataaa 29954800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 17 - 245
Target Start/End: Original strand, 3061258 - 3061484
Alignment:
Q  17 tagggggatcaaaagtcgggtaggggatactcttgtgtgaaacctatcagtcaaccgtacatcaaactgtctgtaacccacaaaaatcaaggtaatctag 116  Q
    ||||||||| ||||  | |||||||||||||||||||  |||||||||| ||||| ||| ||||||||||  || ||||||||||  |||||||||| ||    
T  3061258 tagggggataaaaaaccaggtaggggatactcttgtg--aaacctatcaatcaacggtatatcaaactgttcgtcacccacaaaatccaaggtaatccag 3061355  T
Q  117 gcaccaagaccgattccgtaaaagtcacaaatcgctttactataacattttgttaggataacactatggnnnnnnnatatagtataatcatcactgtgac 216  Q
    ||||||| ||||||||| |||||||| | |||||||||||||||||||||| |||| | ||   |||||       ||||||||||||| ||||||||||    
T  3061356 gcaccaaaaccgattccttaaaagtctcgaatcgctttactataacattttattagtacaatgttatggtttttttatatagtataatcttcactgtgac 3061455  T
Q  217 aaacgaaatttgaaattgacaaagaaata 245  Q
    ||||||||||| |||||||||| ||||||    
T  3061456 aaacgaaatttcaaattgacaatgaaata 3061484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 14 - 154
Target Start/End: Complemental strand, 5091901 - 5091763
Alignment:
Q  14 gcatagggggatcaaaagtcgggtaggggatactcttgtgtgaaacctatcagtcaaccgtacatcaaactgtctgtaacccacaaaaatcaaggtaatc 113  Q
    |||||||||||||||||  |||||||||||||||||||||  |||||||||||||||| ||| ||||||||||| || ||| ||||||| |||||||||     
T  5091901 gcatagggggatcaaaaaccgggtaggggatactcttgtg--aaacctatcagtcaactgtatatcaaactgtccgtcaccaacaaaaaccaaggtaatt 5091804  T
Q  114 taggcaccaagaccgattccgtaaaagtcacaaatcgcttt 154  Q
     ||||||||||| |||||||||||||||||| |||||||||    
T  5091803 caggcaccaagatcgattccgtaaaagtcacgaatcgcttt 5091763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 14 - 154
Target Start/End: Complemental strand, 32657655 - 32657518
Alignment:
Q  14 gcatagggggatcaaaagtcgggtaggggatactcttgtgtgaaacctatcagtcaaccgtacatcaaactgtctgtaacccacaaaaatcaaggtaatc 113  Q
    |||||||||||||||||  |||||||||||||||||||||  |||||||||||||||| ||  ||||||||||| || ||| ||||||| |||||||||     
T  32657655 gcatagggggatcaaaaa-cgggtaggggatactcttgtg--aaacctatcagtcaactgtgtatcaaactgtccgtcaccaacaaaaaccaaggtaatt 32657559  T
Q  114 taggcaccaagaccgattccgtaaaagtcacaaatcgcttt 154  Q
    |||||||||||| |||||||||||||||||| |||||||||    
T  32657558 taggcaccaagatcgattccgtaaaagtcacgaatcgcttt 32657518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 14 - 144
Target Start/End: Original strand, 3066460 - 3066587
Alignment:
Q  14 gcatagggggatcaaaagtcgggtaggggatactcttgtgtgaaacctatcagtcaaccgtacatcaaactgtctgtaacccacaaaaatcaaggtaatc 113  Q
    ||||||| |||||||||  |||||||||||||||||||||  |||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||    
T  3066460 gcataggaggatcaaaaaccgggtaggggatactcttgtg--aaacctatcagtcaacggtatatcaaactgtctgtcacccacaaaaatcaaggtaatc 3066557  T
Q  114 taggcaccaagaccgattccgtaaaagtcac 144  Q
     |  ||||||||||||||| |||||||||||    
T  3066558 ca-acaccaagaccgattcggtaaaagtcac 3066587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 16 - 449
Target Start/End: Complemental strand, 26211070 - 26210635
Alignment:
Q  16 atagggggatcaaaagtcgggtaggggatactcttgtgtgaaacctatcagtcaaccgtacatcaaactgtctgtaacccacaaaaatcaaggtaatcta 115  Q
    |||||||||||||||| |||||| ||||||||||||||  |||||||||||||||||||| ||||||||||| || ||||| ||||| |||| ||||| |    
T  26211070 atagggggatcaaaagccgggtaagggatactcttgtg--aaacctatcagtcaaccgtatatcaaactgtccgtcacccataaaaaccaagataatcca 26210973  T
Q  116 ggcaccaagaccgattccgtaaaagtcacaaatcgctttactataacattttgttaggataacactatggnnnnnnn---atatagtataatcatcactg 212  Q
    || ||||||||||||||||||||| |||| |||||||||||||||||||||| |||| | ||| ||||||          ||||||||||||||||||||    
T  26210972 ggtaccaagaccgattccgtaaaattcacgaatcgctttactataacattttattagtacaacgctatggttttttttttatatagtataatcatcactg 26210873  T
Q  213 tgacaaacgaaatttgaaattgacaaagaaataattatgtaattcaagtatgtgaattttaccatgagggctactacgaaagacttgatgatgctttgta 312  Q
    ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||    ||| |||||||| |||||  |||||    
T  26210872 tgacaaacgaaatttgaaattgacaaagaaatatttctgtaattcaagtatgtgaattttaccatgagggcagtaacggaagacttgctgatgtgttgta 26210773  T
Q  313 aattaaagtgtacatatatattaatataagagcatattagtcacgtta-gaaacttaaaatacatttctggaaattctttcagatgaatatatattaata 411  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||  |||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  26210772 aattaaagtgtacatatatattaatataagagcatattagtcacattacaaaacttaaaatacatttctgaaaattcttttagatgaatatatattaata 26210673  T
Q  412 caacatcaagaaaaaatgtgttttggttgattttgttc 449  Q
    ||||||||||||||| | ||||||||||||||||||||    
T  26210672 caacatcaagaaaaagtatgttttggttgattttgttc 26210635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 449 - 626
Target Start/End: Complemental strand, 26210605 - 26210432
Alignment:
Q  449 caaagatgcctctagtgtttctagattctatatgacaaaatactttaaccaaaggaatagcaccaaggaaaattataaggagtgcacacttatattaggt 548  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||| | ||||||||||||| ||| |||||||||||    
T  26210605 caaagatgcctctagtgtttctagattttatatgacaaaatactttaaccaatggaatagcatcaaggcatattataaggagtggacagttatattaggt 26210506  T
Q  549 cgatgaatatatccaaaaatgactataaatacatacacacagtttcattaaaagtgacaaataactaatagtataaac 626  Q
    | |||||||||||||||||| |||    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26210505 caatgaatatatccaaaaattact----atacatacacacagtttcattaaaagtgacaaataactaatagtataaac 26210432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 14 - 154
Target Start/End: Original strand, 45506294 - 45506432
Alignment:
Q  14 gcatagggggatcaaaagtcgggtaggggatactcttgtgtgaaacctatcagtcaaccgtacatcaaactgtctgtaacccacaaaaatcaaggtaatc 113  Q
    |||||||||||||||||  |||||||||||||||||||||  |||||||||||||||| ||| ||||||||||| || ||| ||||||| |||||||||     
T  45506294 gcatagggggatcaaaaaccgggtaggggatactcttgtg--aaacctatcagtcaactgtatatcaaactgtccgtcaccaacaaaaaccaaggtaatt 45506391  T
Q  114 taggcaccaagaccgattccgtaaaagtcacaaatcgcttt 154  Q
     ||||||||||| |||||||||||||||||| |||||||||    
T  45506392 caggcaccaagatcgattccgtaaaagtcacgaatcgcttt 45506432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 14 - 154
Target Start/End: Complemental strand, 48959434 - 48959296
Alignment:
Q  14 gcatagggggatcaaaagtcgggtaggggatactcttgtgtgaaacctatcagtcaaccgtacatcaaactgtctgtaacccacaaaaatcaaggtaatc 113  Q
    |||||||||||||||||  |||||||||||||||||||||  |||||||||||||||| ||| ||||||||||| || ||| ||||||| |||||||||     
T  48959434 gcatagggggatcaaaaaccgggtaggggatactcttgtg--aaacctatcagtcaactgtatatcaaactgtccgtcaccaacaaaaaccaaggtaatt 48959337  T
Q  114 taggcaccaagaccgattccgtaaaagtcacaaatcgcttt 154  Q
     ||||||||||| |||||||||||||||||| |||||||||    
T  48959336 caggcaccaagatcgattccgtaaaagtcacgaatcgcttt 48959296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 14 - 154
Target Start/End: Original strand, 2051058 - 2051196
Alignment:
Q  14 gcatagggggatcaaaagtcgggtaggggatactcttgtgtgaaacctatcagtcaaccgtacatcaaactgtctgtaacccacaaaaatcaaggtaatc 113  Q
    |||||||||||||||||  ||||||||||||| |||||||  |||||||||||||||  ||| ||||||||||| || ||||||||||| ||||||||||    
T  2051058 gcatagggggatcaaaaaccgggtaggggatattcttgtg--aaacctatcagtcaagtgtatatcaaactgtccgtcacccacaaaaaccaaggtaatc 2051155  T
Q  114 taggcaccaagaccgattccgtaaaagtcacaaatcgcttt 154  Q
      |||||||||| |||||||||||||||||| |||||||||    
T  2051156 cgggcaccaagatcgattccgtaaaagtcacgaatcgcttt 2051196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 14 - 154
Target Start/End: Original strand, 36870317 - 36870455
Alignment:
Q  14 gcatagggggatcaaaagtcgggtaggggatactcttgtgtgaaacctatcagtcaaccgtacatcaaactgtctgtaacccacaaaaatcaaggtaatc 113  Q
    |||||||||||||||||  ||||||||||||| |||||||  |||||||||||||||  ||| ||||||||||| || ||||||||||| ||||||||||    
T  36870317 gcatagggggatcaaaaaccgggtaggggatattcttgtg--aaacctatcagtcaagtgtatatcaaactgtccgtcacccacaaaaaccaaggtaatc 36870414  T
Q  114 taggcaccaagaccgattccgtaaaagtcacaaatcgcttt 154  Q
      |||||||||| |||||||||||||||||| |||||||||    
T  36870415 cgggcaccaagatcgattccgtaaaagtcacgaatcgcttt 36870455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 15 - 98
Target Start/End: Original strand, 13928484 - 13928564
Alignment:
Q  15 catagggggatcaaaagtcgggtaggggatactcttgtgtgaaacctatcagtcaaccgtacatcaaactgtctgtaacccaca 98  Q
    ||||||||| |||||| ||||||||||||||||||||||  |||||||||||||||| ||| ||||||||||| || |||||||    
T  13928484 cataggggggtcaaaa-tcgggtaggggatactcttgtg--aaacctatcagtcaactgtatatcaaactgtccgtcacccaca 13928564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 116; Significance: 1e-58; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 14 - 245
Target Start/End: Original strand, 18489428 - 18489657
Alignment:
Q  14 gcatagggggatcaaaagtcgggtaggggatactcttgtgtgaaacctatcagtcaaccgtacatcaaactgtctgtaacccacaaaaatcaaggtaatc 113  Q
    ||||| |||||||||||  |||||||||||||||||||||  |||||||| ||||||| ||| ||||||||||| || ||||||||||| ||||||||||    
T  18489428 gcataaggggatcaaaaaccgggtaggggatactcttgtg--aaacctattagtcaacggtatatcaaactgtcagtcacccacaaaaaccaaggtaatc 18489525  T
Q  114 taggcaccaagaccgattccgtaaaagtcacaaatcgctttactataacattttgttaggataacactatggnnnnnnnatatagtataatcatcactgt 213  Q
     | | ||||||||||||||| |||||||||| |||| |||||||||| |||||| |||| | ||||||||||       ||||||||||||||||||| |    
T  18489526 caagaaccaagaccgattccataaaagtcacgaatcactttactatatcattttattagtacaacactatggtttttttatatagtataatcatcactct 18489625  T
Q  214 gacaaacgaaatttgaaattgacaaagaaata 245  Q
    |||||||||||| |||||||||||||||||||    
T  18489626 gacaaacgaaatatgaaattgacaaagaaata 18489657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 17 - 154
Target Start/End: Original strand, 409383 - 409518
Alignment:
Q  17 tagggggatcaaaagtcgggtaggggatactcttgtgtgaaacctatcagtcaaccgtacatcaaactgtctgtaacccacaaaaatcaaggtaatctag 116  Q
    ||||||||||||||  | |||||||||||||||||||  |||||||||||||||  ||| ||||||||||| || ||||||||||| |||||||||  ||    
T  409383 tagggggatcaaaaaccaggtaggggatactcttgtg--aaacctatcagtcaagtgtatatcaaactgtccgtcacccacaaaaaccaaggtaattcag 409480  T
Q  117 gcaccaagaccgattccgtaaaagtcacaaatcgcttt 154  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  409481 gcaccaagatcgattccgtaaaagtcacgaatcgcttt 409518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 19958781 - 19958732
Alignment:
Q  19 gggggatcaaaagtcgggtaggggatactcttgtgtgaaacctatcagtcaa 70  Q
    ||||||||||||  |||||||||||||||||  |||||||||||||| ||||    
T  19958781 gggggatcaaaaaccgggtaggggatactct--tgtgaaacctatcaatcaa 19958732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 90; Significance: 4e-43; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 14 - 154
Target Start/End: Original strand, 27999410 - 27999548
Alignment:
Q  14 gcatagggggatcaaaagtcgggtaggggatactcttgtgtgaaacctatcagtcaaccgtacatcaaactgtctgtaacccacaaaaatcaaggtaatc 113  Q
    ||||||||||||||||| || |||||||||||||||||||  || ||||||||||||||||| ||||||||||| || ||||||||||| ||||||||||    
T  27999410 gcatagggggatcaaaaatcaggtaggggatactcttgtg--aagcctatcagtcaaccgtatatcaaactgtccgtcacccacaaaaaccaaggtaatc 27999507  T
Q  114 taggcaccaagaccgattccgtaaaagtcacaaatcgcttt 154  Q
     |||||||||||||||||| ||||||||||| |||||||||    
T  27999508 caggcaccaagaccgattctgtaaaagtcacgaatcgcttt 27999548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 14 - 154
Target Start/End: Original strand, 28090144 - 28090282
Alignment:
Q  14 gcatagggggatcaaaagtcgggtaggggatactcttgtgtgaaacctatcagtcaaccgtacatcaaactgtctgtaacccacaaaaatcaaggtaatc 113  Q
    ||||||||||||||||| || |||||||||||||||||||  || ||||||||||||||||| ||||||||||| || ||||||||||| ||||||||||    
T  28090144 gcatagggggatcaaaaatcaggtaggggatactcttgtg--aagcctatcagtcaaccgtatatcaaactgtccgtcacccacaaaaaccaaggtaatc 28090241  T
Q  114 taggcaccaagaccgattccgtaaaagtcacaaatcgcttt 154  Q
     |||||||||||||||||| ||||||||||| |||||||||    
T  28090242 caggcaccaagaccgattctgtaaaagtcacgaatcgcttt 28090282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 14 - 154
Target Start/End: Original strand, 28096467 - 28096605
Alignment:
Q  14 gcatagggggatcaaaagtcgggtaggggatactcttgtgtgaaacctatcagtcaaccgtacatcaaactgtctgtaacccacaaaaatcaaggtaatc 113  Q
    ||||||||||||||||| || |||||||||||||||||||  || ||||||||||||||||| ||||||||||| || ||||||||||| ||||||||||    
T  28096467 gcatagggggatcaaaaatcaggtaggggatactcttgtg--aagcctatcagtcaaccgtatatcaaactgtccgtcacccacaaaaaccaaggtaatc 28096564  T
Q  114 taggcaccaagaccgattccgtaaaagtcacaaatcgcttt 154  Q
     |||||||||||||||||| ||||||||||| |||||||||    
T  28096565 caggcaccaagaccgattctgtaaaagtcacgaatcgcttt 28096605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 14 - 154
Target Start/End: Original strand, 1918661 - 1918799
Alignment:
Q  14 gcatagggggatcaaaagtcgggtaggggatactcttgtgtgaaacctatcagtcaaccgtacatcaaactgtctgtaacccacaaaaatcaaggtaatc 113  Q
    |||||||||| |||||| |||||||| |||||||||||||  |||||| ||||||||||||| |||||| |||| || ||||||||||| ||||||||||    
T  1918661 gcataggggggtcaaaaatcgggtagaggatactcttgtg--aaacctgtcagtcaaccgtatatcaaattgtccgtcacccacaaaaaccaaggtaatc 1918758  T
Q  114 taggcaccaagaccgattccgtaaaagtcacaaatcgcttt 154  Q
     |||||||||||||||||||||||||||||| |||||||||    
T  1918759 caggcaccaagaccgattccgtaaaagtcacgaatcgcttt 1918799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 14 - 154
Target Start/End: Complemental strand, 19820626 - 19820488
Alignment:
Q  14 gcatagggggatcaaaagtcgggtaggggatactcttgtgtgaaacctatcagtcaaccgtacatcaaactgtctgtaacccacaaaaatcaaggtaatc 113  Q
    |||||||||||||||||  |||||||||||||||||||||  |||||||||||||||| ||| ||||||||||| || ||| ||||||| ||||||||||    
T  19820626 gcatagggggatcaaaaaccgggtaggggatactcttgtg--aaacctatcagtcaactgtatatcaaactgtccgtcaccaacaaaaaccaaggtaatc 19820529  T
Q  114 taggcaccaagaccgattccgtaaaagtcacaaatcgcttt 154  Q
     ||||||||||| |||||||||||||||||| |||||||||    
T  19820528 caggcaccaagatcgattccgtaaaagtcacgaatcgcttt 19820488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 14 - 154
Target Start/End: Complemental strand, 19840847 - 19840709
Alignment:
Q  14 gcatagggggatcaaaagtcgggtaggggatactcttgtgtgaaacctatcagtcaaccgtacatcaaactgtctgtaacccacaaaaatcaaggtaatc 113  Q
    |||||||||||||||||  |||||||||||||||||||||  |||||||||||||||| ||| ||||||||||| || ||| ||||||| ||||||||||    
T  19840847 gcatagggggatcaaaaaccgggtaggggatactcttgtg--aaacctatcagtcaactgtatatcaaactgtccgtcaccaacaaaaaccaaggtaatc 19840750  T
Q  114 taggcaccaagaccgattccgtaaaagtcacaaatcgcttt 154  Q
     ||||||||||| |||||||||||||||||| |||||||||    
T  19840749 caggcaccaagatcgattccgtaaaagtcacgaatcgcttt 19840709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 14 - 154
Target Start/End: Original strand, 5000592 - 5000730
Alignment:
Q  14 gcatagggggatcaaaagtcgggtaggggatactcttgtgtgaaacctatcagtcaaccgtacatcaaactgtctgtaacccacaaaaatcaaggtaatc 113  Q
    |||||||||||||||||  | |||||||||||||||||||  |||||||||||||||| ||| |||||| |||| || ||| ||||||| ||||||||||    
T  5000592 gcatagggggatcaaaaaccaggtaggggatactcttgtg--aaacctatcagtcaactgtatatcaaattgtccgtcaccaacaaaaaccaaggtaatc 5000689  T
Q  114 taggcaccaagaccgattccgtaaaagtcacaaatcgcttt 154  Q
     ||||||||||| |||||||||||||||||| |||||||||    
T  5000690 caggcaccaagatcgattccgtaaaagtcacgaatcgcttt 5000730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 14 - 154
Target Start/End: Original strand, 21590404 - 21590542
Alignment:
Q  14 gcatagggggatcaaaagtcgggtaggggatactcttgtgtgaaacctatcagtcaaccgtacatcaaactgtctgtaacccacaaaaatcaaggtaatc 113  Q
    ||||| |||||||||||  |||||||||||||||||||||  |||||||||||||||| ||| ||||||||||| || ||| ||||||| |||||||||     
T  21590404 gcataaggggatcaaaaaccgggtaggggatactcttgtg--aaacctatcagtcaactgtatatcaaactgtccgtcaccaacaaaaaccaaggtaatt 21590501  T
Q  114 taggcaccaagaccgattccgtaaaagtcacaaatcgcttt 154  Q
     ||||||||||| |||||| |||||||||||||||||||||    
T  21590502 caggcaccaagatcgattctgtaaaagtcacaaatcgcttt 21590542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 14 - 154
Target Start/End: Original strand, 42110888 - 42111026
Alignment:
Q  14 gcatagggggatcaaaagtcgggtaggggatactcttgtgtgaaacctatcagtcaaccgtacatcaaactgtctgtaacccacaaaaatcaaggtaatc 113  Q
    |||||||||||||||||  | ||||||||||||||  ||||||||||||||||||||| ||| ||||||||||| || ||| ||||||| ||||||||||    
T  42110888 gcatagggggatcaaaaaccaggtaggggatactc--gtgtgaaacctatcagtcaactgtatatcaaactgtccgtcaccaacaaaaaccaaggtaatc 42110985  T
Q  114 taggcaccaagaccgattccgtaaaagtcacaaatcgcttt 154  Q
     ||||||||||| |||||||||||||||||  |||||||||    
T  42110986 caggcaccaagatcgattccgtaaaagtcaagaatcgcttt 42111026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 14 - 154
Target Start/End: Complemental strand, 205175 - 205037
Alignment:
Q  14 gcatagggggatcaaaagtcgggtaggggatactcttgtgtgaaacctatcagtcaaccgtacatcaaactgtctgtaacccacaaaaatcaaggtaatc 113  Q
    |||||||||||||||||  |||||||||||||||||||||  |||||||||||||||| ||  ||| ||||||| || ||| ||||||| |||||||||     
T  205175 gcatagggggatcaaaaaccgggtaggggatactcttgtg--aaacctatcagtcaactgtgtatctaactgtccgtcaccaacaaaaaccaaggtaatt 205078  T
Q  114 taggcaccaagaccgattccgtaaaagtcacaaatcgcttt 154  Q
     ||||||||||| |||||||||||||||||| |||||||||    
T  205077 caggcaccaagatcgattccgtaaaagtcacgaatcgcttt 205037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 19 - 154
Target Start/End: Original strand, 5012267 - 5012400
Alignment:
Q  19 gggggatcaaaagtcgggtaggggatactcttgtgtgaaacctatcagtcaaccgtacatcaaactgtctgtaacccacaaaaatcaaggtaatctaggc 118  Q
    ||||||||||||  | |||||||||||||||||||  |||||||||||||||| ||| |||||| |||| || ||| ||||||| |||||||||| ||||    
T  5012267 gggggatcaaaaaccaggtaggggatactcttgtg--aaacctatcagtcaactgtatatcaaattgtccgtcaccaacaaaaaccaaggtaatccaggc 5012364  T
Q  119 accaagaccgattccgtaaaagtcacaaatcgcttt 154  Q
    ||||||| |||||||||||||||||| |||||||||    
T  5012365 accaagatcgattccgtaaaagtcacgaatcgcttt 5012400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 14 - 154
Target Start/End: Original strand, 36439408 - 36439545
Alignment:
Q  14 gcatagggggatcaaaagtcgggtaggggatactcttgtgtgaaacctatcagtcaaccgtacatcaaactgtctgtaacccacaaaaatcaaggtaatc 113  Q
    |||||||||||||||||  | ||||||| |||||||||||  ||||||||||||||||  || |||||||||||||| ||| ||||||| |||||||||     
T  36439408 gcatagggggatcaaaaaccaggtaggg-atactcttgtg--aaacctatcagtcaactatatatcaaactgtctgtcaccaacaaaaaccaaggtaatt 36439504  T
Q  114 taggcaccaagaccgattccgtaaaagtcacaaatcgcttt 154  Q
     ||||||||||| |||||||||||||||||| |||| ||||    
T  36439505 caggcaccaagatcgattccgtaaaagtcacgaatcacttt 36439545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 454 - 560
Target Start/End: Original strand, 35849156 - 35849262
Alignment:
Q  454 atgcctctagtgtttctagattctatatgacaaaatactttaaccaaaggaatagcaccaaggaaaattataaggagtgcacacttatattaggtcgatg 553  Q
    ||||||| ||||||| | ||||||||||| || |||||||||||||  ||||||||||||||| ||||||||||| |||| || |||||||||||| |||    
T  35849156 atgcctccagtgtttttggattctatatgtcataatactttaaccagtggaatagcaccaaggcaaattataaggtgtgcccagttatattaggtcaatg 35849255  T
Q  554 aatatat 560  Q
    |||||||    
T  35849256 aatatat 35849262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 92 - 144
Target Start/End: Complemental strand, 13900854 - 13900802
Alignment:
Q  92 acccacaaaaatcaaggtaatctaggcaccaagaccgattccgtaaaagtcac 144  Q
    ||||||||||| |||||||||| ||||||||||| ||||||||||||||||||    
T  13900854 acccacaaaaaccaaggtaatccaggcaccaagatcgattccgtaaaagtcac 13900802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 1e-39; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 14 - 156
Target Start/End: Complemental strand, 11824822 - 11824682
Alignment:
Q  14 gcatagggggatcaaaagtcgggtaggggatactcttgtgtgaaacctatcagtcaaccgtacatcaaactgtctgtaacccacaaaaatcaaggtaatc 113  Q
    |||||||||||||||||  |||||||||||||||||||||  |||||||||||||||| ||| ||||||||||| || ||| ||||||| ||||||||||    
T  11824822 gcatagggggatcaaaaaccgggtaggggatactcttgtg--aaacctatcagtcaactgtatatcaaactgtccgtcaccaacaaaaaccaaggtaatc 11824725  T
Q  114 taggcaccaagaccgattccgtaaaagtcacaaatcgctttac 156  Q
     ||||||||||| |||||||||||||||||  |||||||||||    
T  11824724 caggcaccaagatcgattccgtaaaagtcaagaatcgctttac 11824682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 14 - 154
Target Start/End: Complemental strand, 31484479 - 31484341
Alignment:
Q  14 gcatagggggatcaaaagtcgggtaggggatactcttgtgtgaaacctatcagtcaaccgtacatcaaactgtctgtaacccacaaaaatcaaggtaatc 113  Q
    |||||||||||||||||  |||||||||||||||||||||  |||||||||||||||| ||| |||||| |||| || ||||||||||| ||||||||||    
T  31484479 gcatagggggatcaaaaaccgggtaggggatactcttgtg--aaacctatcagtcaactgtatatcaaattgtccgtcacccacaaaaaccaaggtaatc 31484382  T
Q  114 taggcaccaagaccgattccgtaaaagtcacaaatcgcttt 154  Q
     |||||||||||  ||||||||||||||||| |||||||||    
T  31484381 caggcaccaagattgattccgtaaaagtcacgaatcgcttt 31484341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 14 - 154
Target Start/End: Original strand, 33005275 - 33005413
Alignment:
Q  14 gcatagggggatcaaaagtcgggtaggggatactcttgtgtgaaacctatcagtcaaccgtacatcaaactgtctgtaacccacaaaaatcaaggtaatc 113  Q
    |||||||||||||||||  |||||||||||||||||||||  |||||||||||||||| ||| ||||||||||| || ||| ||||||| ||||||||||    
T  33005275 gcatagggggatcaaaaaccgggtaggggatactcttgtg--aaacctatcagtcaactgtatatcaaactgtccgtcaccaacaaaaaccaaggtaatc 33005372  T
Q  114 taggcaccaagaccgattccgtaaaagtcacaaatcgcttt 154  Q
     ||||||||||| |||||||||||||||||  |||||||||    
T  33005373 caggcaccaagatcgattccgtaaaagtcaagaatcgcttt 33005413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 20 - 154
Target Start/End: Complemental strand, 857631 - 857499
Alignment:
Q  20 ggggatcaaaagtcgggtaggggatactcttgtgtgaaacctatcagtcaaccgtacatcaaactgtctgtaacccacaaaaatcaaggtaatctaggca 119  Q
    |||||||||||   |||||||| |||||||||||  |||||||||||||||||||| ||||||||||| || ||||||||||| |||||||||| |||||    
T  857631 ggggatcaaaaactgggtagggtatactcttgtg--aaacctatcagtcaaccgtatatcaaactgtccgtcacccacaaaaaccaaggtaatccaggca 857534  T
Q  120 ccaagaccgattccgtaaaagtcacaaatcgcttt 154  Q
    |||||||||||| |||||||||||| |||||||||    
T  857533 ccaagaccgatttcgtaaaagtcacgaatcgcttt 857499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 14 - 154
Target Start/End: Original strand, 36090226 - 36090364
Alignment:
Q  14 gcatagggggatcaaaagtcgggtaggggatactcttgtgtgaaacctatcagtcaaccgtacatcaaactgtctgtaacccacaaaaatcaaggtaatc 113  Q
    |||||||||||||||||  |||||||||||||||||||||  |||||||||||||||| ||| ||||||||||| || ||| ||||||| |||||||||     
T  36090226 gcatagggggatcaaaaaccgggtaggggatactcttgtg--aaacctatcagtcaactgtatatcaaactgtccgtcaccaacaaaaaccaaggtaatt 36090323  T
Q  114 taggcaccaagaccgattccgtaaaagtcacaaatcgcttt 154  Q
     ||||||||||| ||||||  |||||||||| |||||||||    
T  36090324 caggcaccaagatcgattctataaaagtcacgaatcgcttt 36090364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 14 - 154
Target Start/End: Complemental strand, 35714008 - 35713870
Alignment:
Q  14 gcatagggggatcaaaagtcgggtaggggatactcttgtgtgaaacctatcagtcaaccgtacatcaaactgtctgtaacccacaaaaatcaaggtaatc 113  Q
    |||||||||||||||||  ||||| |||||||||||||||  |||||||||||||||| ||| ||||||||||| || ||| |||||||  ||||||||     
T  35714008 gcatagggggatcaaaaaccgggttggggatactcttgtg--aaacctatcagtcaactgtatatcaaactgtccgtcaccaacaaaaacaaaggtaatt 35713911  T
Q  114 taggcaccaagaccgattccgtaaaagtcacaaatcgcttt 154  Q
     || |||||||| |||||||||||||||||| |||||||||    
T  35713910 cagacaccaagatcgattccgtaaaagtcacgaatcgcttt 35713870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 14 - 154
Target Start/End: Original strand, 49565210 - 49565348
Alignment:
Q  14 gcatagggggatcaaaagtcgggtaggggatactcttgtgtgaaacctatcagtcaaccgtacatcaaactgtctgtaacccacaaaaatcaaggtaatc 113  Q
    |||||||||||||||||  |||||||||||||||||||||  ||||||||||| |||| ||| ||||||||||| || ||| ||||||| |||||||||     
T  49565210 gcatagggggatcaaaaaccgggtaggggatactcttgtg--aaacctatcagacaactgtatatcaaactgtccgtcaccaacaaaaaccaaggtaatt 49565307  T
Q  114 taggcaccaagaccgattccgtaaaagtcacaaatcgcttt 154  Q
     ||||||||||| |||||  ||||||||||| |||||||||    
T  49565308 caggcaccaagatcgattgtgtaaaagtcacgaatcgcttt 49565348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 14 - 154
Target Start/End: Original strand, 43508922 - 43509060
Alignment:
Q  14 gcatagggggatcaaaagtcgggtaggggatactcttgtgtgaaacctatcagtcaaccgtacatcaaactgtctgtaacccacaaaaatcaaggtaatc 113  Q
    |||||||||| ||||||  |||||||||||||||||||||  |||||||||||||||| ||| ||||||||||| ||  |  ||||||| ||||||||||    
T  43508922 gcataggggggtcaaaaaccgggtaggggatactcttgtg--aaacctatcagtcaactgtatatcaaactgtccgtcgctaacaaaaaccaaggtaatc 43509019  T
Q  114 taggcaccaagaccgattccgtaaaagtcacaaatcgcttt 154  Q
     ||||||||||| ||||||| ||||| |||| |||||||||    
T  43509020 caggcaccaagatcgattccataaaattcacgaatcgcttt 43509060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 18 - 154
Target Start/End: Complemental strand, 37295 - 37161
Alignment:
Q  18 agggggatcaaaagtcgggtaggggatactcttgtgtgaaacctatcagtcaaccgtacatcaaactgtctgtaacccacaaaaatcaaggtaatctagg 117  Q
    |||||||||||||  |||||||||||||||||||||  |||||||||||||||||||| |||||||| ||| | ||||||||||| ||||||||||||||    
T  37295 agggggatcaaaaaccgggtaggggatactcttgtg--aaacctatcagtcaaccgtatatcaaactatctatcacccacaaaaaccaaggtaatctagg 37198  T
Q  118 caccaagaccgattccgtaaaagtcacaaatcgcttt 154  Q
    ||||||||||||||  ||||||||||  |||||||||    
T  37197 caccaagaccgattgagtaaaagtcaggaatcgcttt 37161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 2e-38; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 14 - 154
Target Start/End: Complemental strand, 42346105 - 42345967
Alignment:
Q  14 gcatagggggatcaaaagtcgggtaggggatactcttgtgtgaaacctatcagtcaaccgtacatcaaactgtctgtaacccacaaaaatcaaggtaatc 113  Q
    ||||| |||||||||||  |||||||||||||||||||||  |||||||||||||||| ||| ||||||||||| || ||| ||||||| ||||||||||    
T  42346105 gcataaggggatcaaaaaccgggtaggggatactcttgtg--aaacctatcagtcaactgtatatcaaactgtccgtcaccaacaaaaaccaaggtaatc 42346008  T
Q  114 taggcaccaagaccgattccgtaaaagtcacaaatcgcttt 154  Q
     ||||||||||| |||||||||||||||||| |||||||||    
T  42346007 caggcaccaagatcgattccgtaaaagtcacgaatcgcttt 42345967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 14 - 154
Target Start/End: Original strand, 14147702 - 14147840
Alignment:
Q  14 gcatagggggatcaaaagtcgggtaggggatactcttgtgtgaaacctatcagtcaaccgtacatcaaactgtctgtaacccacaaaaatcaaggtaatc 113  Q
    |||||||||||||||||  | |||||||||||||||||||  |||||||||||||||  ||| |||||||||||  | ||||||||||| ||||||||||    
T  14147702 gcatagggggatcaaaaaccaggtaggggatactcttgtg--aaacctatcagtcaagtgtatatcaaactgtccatcacccacaaaaaccaaggtaatc 14147799  T
Q  114 taggcaccaagaccgattccgtaaaagtcacaaatcgcttt 154  Q
     ||||||||||| |||||||||||||||||  |||||||||    
T  14147800 caggcaccaagatcgattccgtaaaagtcatgaatcgcttt 14147840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 14 - 154
Target Start/End: Complemental strand, 53286633 - 53286495
Alignment:
Q  14 gcatagggggatcaaaagtcgggtaggggatactcttgtgtgaaacctatcagtcaaccgtacatcaaactgtctgtaacccacaaaaatcaaggtaatc 113  Q
    |||||||||||||||||   ||||||||||||||||||||  ||| |||||||||||| | | |||||||||||  | ||| |||||||  |||||||||    
T  53286633 gcatagggggatcaaaaactgggtaggggatactcttgtg--aaagctatcagtcaactgcatatcaaactgtccttcaccaacaaaaactaaggtaatc 53286536  T
Q  114 taggcaccaagaccgattccgtaaaagtcacaaatcgcttt 154  Q
     ||||||||||| ||||||||||||| |||| |||||||||    
T  53286535 caggcaccaagatcgattccgtaaaattcacgaatcgcttt 53286495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 29362822 - 29362877
Alignment:
Q  14 gcatagggggatcaaaagtcgggtaggggatactcttgtgtgaaacctatcagtcaac 71  Q
    |||||||||||| ||||  |||||||||||||||||  ||||||||||||||||||||    
T  29362822 gcatagggggataaaaaaccgggtaggggatactct--tgtgaaacctatcagtcaac 29362877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 1e-36; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 14 - 143
Target Start/End: Original strand, 29370902 - 29371029
Alignment:
Q  14 gcatagggggatcaaaagtcgggtaggggatactcttgtgtgaaacctatcagtcaaccgtacatcaaactgtctgtaacccacaaaaatcaaggtaatc 113  Q
    |||||||||||||||||  |||||||||||||||||||||  |||||||||||||||| ||| |||||||||||||| ||| ||||||| ||||||||||    
T  29370902 gcatagggggatcaaaaaccgggtaggggatactcttgtg--aaacctatcagtcaactgtatatcaaactgtctgtcaccaacaaaaaccaaggtaatc 29370999  T
Q  114 taggcaccaagaccgattccgtaaaagtca 143  Q
     ||||||||||| | |||||||||||||||    
T  29371000 caggcaccaagatcaattccgtaaaagtca 29371029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 14 - 143
Target Start/End: Original strand, 29373457 - 29373584
Alignment:
Q  14 gcatagggggatcaaaagtcgggtaggggatactcttgtgtgaaacctatcagtcaaccgtacatcaaactgtctgtaacccacaaaaatcaaggtaatc 113  Q
    |||||||||||||||||   ||||| ||||||||||||||  |||||||||||||||| ||| |||||| ||||||| ||| ||||||| ||||||||||    
T  29373457 gcatagggggatcaaaaactgggtatgggatactcttgtg--aaacctatcagtcaactgtatatcaaaatgtctgtcaccaacaaaaaccaaggtaatc 29373554  T
Q  114 taggcaccaagaccgattccgtaaaagtca 143  Q
     ||||||||||| |||||||||||||||||    
T  29373555 caggcaccaagatcgattccgtaaaagtca 29373584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 14 - 154
Target Start/End: Complemental strand, 24457369 - 24457231
Alignment:
Q  14 gcatagggggatcaaaagtcgggtaggggatactcttgtgtgaaacctatcagtcaaccgtacatcaaactgtctgtaacccacaaaaatcaaggtaatc 113  Q
    ||||||| |||||||||  |||||||||||||||||||||  |||||||||||||||| ||| |||||||| || || ||| |||||||  |||||||||    
T  24457369 gcataggaggatcaaaaaccgggtaggggatactcttgtg--aaacctatcagtcaactgtatatcaaactatccgtcaccaacaaaaacaaaggtaatc 24457272  T
Q  114 taggcaccaagaccgattccgtaaaagtcacaaatcgcttt 154  Q
     ||||||||||| |||||||||||||||||  |||||||||    
T  24457271 caggcaccaagatcgattccgtaaaagtcaagaatcgcttt 24457231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 33006535 - 33006606
Alignment:
Q  14 gcatagggggatcaaaagtcgggtaggggatactcttgtgtgaaacctatcagtcaaccgtacatcaaactgtc 87  Q
    ||||||||||||||||| ||||||| ||||||||||  |||||||||||||||||||| ||| |||||||||||    
T  33006535 gcatagggggatcaaaaatcgggtaagggatactct--tgtgaaacctatcagtcaactgtatatcaaactgtc 33006606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 14 - 156
Target Start/End: Complemental strand, 10039073 - 10038933
Alignment:
Q  14 gcatagggggatcaaaagtcgggtaggggatactcttgtgtgaaacctatcagtcaaccgtacatcaaactgtctgtaacccacaaaaatcaaggtaatc 113  Q
    |||||||||| ||||||  |||||||||||||||||||||  ||||||||||||||||  || ||||||||||| || | | ||||||| ||||||||||    
T  10039073 gcataggggggtcaaaaaccgggtaggggatactcttgtg--aaacctatcagtcaactatatatcaaactgtccgtcatcaacaaaaaccaaggtaatc 10038976  T
Q  114 taggcaccaagaccgattccgtaaaagtcacaaatcgctttac 156  Q
     ||||||||||| |||||||||||||||||  |||||||||||    
T  10038975 caggcaccaagatcgattccgtaaaagtcaagaatcgctttac 10038933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 92 - 144
Target Start/End: Original strand, 20108398 - 20108450
Alignment:
Q  92 acccacaaaaatcaaggtaatctaggcaccaagaccgattccgtaaaagtcac 144  Q
    ||||||||||| |||||||||| ||||||||||| ||||||||||||||||||    
T  20108398 acccacaaaaaccaaggtaatccaggcaccaagatcgattccgtaaaagtcac 20108450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0374 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: scaffold0374
Description:

Target: scaffold0374; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 14 - 154
Target Start/End: Complemental strand, 1029 - 891
Alignment:
Q  14 gcatagggggatcaaaagtcgggtaggggatactcttgtgtgaaacctatcagtcaaccgtacatcaaactgtctgtaacccacaaaaatcaaggtaatc 113  Q
    |||||||||||||||||   ||||||||||||||||| ||  ||||||||||||||  |||| |||||| ||||  | |||  |||||| ||||||||||    
T  1029 gcatagggggatcaaaaactgggtaggggatactcttatg--aaacctatcagtcagtcgtatatcaaattgtccctcaccatcaaaaaccaaggtaatc 932  T
Q  114 taggcaccaagaccgattccgtaaaagtcacaaatcgcttt 154  Q
     |||||||||||||||||| ||||||||||| |||||||||    
T  931 caggcaccaagaccgattctgtaaaagtcacgaatcgcttt 891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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