View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16071_low_4 (Length: 382)

Name: NF16071_low_4
Description: NF16071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16071_low_4
NF16071_low_4
[»] chr1 (1 HSPs)
chr1 (16-370)||(35140146-35140500)
[»] chr3 (16 HSPs)
chr3 (102-370)||(6259097-6259358)
chr3 (99-370)||(6245188-6245449)
chr3 (99-370)||(13270423-13270687)
chr3 (99-348)||(6168811-6169053)
chr3 (99-342)||(6265617-6265853)
chr3 (106-341)||(6142213-6142441)
chr3 (101-340)||(6882432-6882664)
chr3 (238-331)||(6900025-6900118)
chr3 (131-341)||(8568871-8569075)
chr3 (94-225)||(6591218-6591348)
chr3 (238-329)||(5267970-5268061)
chr3 (256-313)||(5298661-5298718)
chr3 (289-329)||(6554516-6554556)
chr3 (289-329)||(6735901-6735941)
chr3 (241-313)||(7587802-7587874)
chr3 (131-191)||(8589772-8589832)
[»] chr4 (1 HSPs)
chr4 (238-310)||(25242184-25242256)
[»] chr7 (1 HSPs)
chr7 (238-317)||(6573322-6573401)


Alignment Details
Target: chr1 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 16 - 370
Target Start/End: Original strand, 35140146 - 35140500
Alignment:
Q  16 tttttaaccagggatctttttgaggcaagatgatcgtgatgacaaatagcatcaggaacatgtgagatatgattttggagtttatttaaggcaattggag 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35140146 tttttaaccagggatctttttgaggcaagatgatcgtgatgacaaatagcatcaggaacatgtgagatatgattttggagtttatttaaggcaattggag 35140245  T
Q  116 gagagtgactcttaagagtttatttgtgagatatggttttgaaggcaggaatatgtttgaatatccaaatcttgaaacgattggtatgaaactagtagaa 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35140246 gagagtgactcttaagagtttatttgtgagatatggttttgaaggcaggaatatgtttgaatatccaaatcttgaaacgattggtatgaaactagtagaa 35140345  T
Q  216 aaatgtggggtnnnnnnnttatctttagctctgaaaacactggggattctcttgcaaagaaaattctccgaaaatgaatgggttaagatattggagactg 315  Q
    |||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35140346 aaatgtggggtgggggggttatctttagctctgaaaacactggggattctcttgcaaagaaaattctccgaaaatgaatgggttaagatattggagactg 35140445  T
Q  316 atttgcggcgtttacccaagggtgacagcagcaacaattattccgttctgagaat 370  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35140446 atttgcggcgtttacccaagggtgacagcagcaacaattattccgttctgagaat 35140500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 148; Significance: 5e-78; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 102 - 370
Target Start/End: Complemental strand, 6259358 - 6259097
Alignment:
Q  102 taaggcaattggaggagagtgactcttaagagtttatttgtgagatatggttttgaaggcaggaatatgtttgaatatccaaatcttgaaacgattggta 201  Q
    |||||||||||||||||||||||||||  || ||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||| |||| || |    
T  6259358 taaggcaattggaggagagtgactcttg-gaatttatttgtaagacatgcttttgaaggcaggaatatgtttgaatatccaaatcttgaatcgatcggca 6259260  T
Q  202 tgaaactagtagaaaaatgtggggtnnnnnnnttatctttagctctgaaaacactggggattctcttgcaaagaaaattctccgaaaatgaatgggttaa 301  Q
     |||| ||||||||||||||||||        ||  ||| ||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||    
T  6259259 agaaaatagtagaaaaatgtgggg------ggttgccttcagctctgaaaacattggggattctcttgcaaagaaagttctctgaaaatgaatgggttaa 6259166  T
Q  302 gatattggagactgatttgcggcgtttacccaagggtgacagcagcaacaattattccgttctgagaat 370  Q
    ||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||| | |||||||    
T  6259165 gatattggagactgatttgtggcgtttacccaagggtgacaacagcaacatttattccgctttgagaat 6259097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 99 - 370
Target Start/End: Complemental strand, 6245449 - 6245188
Alignment:
Q  99 atttaaggcaattggaggagagtgactcttaagagtttatttgtgagatatggttttgaaggcaggaatatgtttgaatatccaaatcttgaaacgattg 198  Q
    ||||||||||||||||||||||||||||||  |||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||    
T  6245449 atttaaggcaattggaggagagtgactcttg-gagtttatttgtaagacatgcttttgaaggcaggaatatgtttgaatatccaaatcttgaatcgattg 6245351  T
Q  199 gtatgaaactagtagaaaaatgtggggtnnnnnnnttatctttagctctgaaaacactggggattctcttgcaaagaaaattctccgaaaatgaatgggt 298  Q
    |||||||| ||||||||||||||||||        |   ||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||    
T  6245350 gtatgaaaatagtagaaaaatgtgggg------ggtcgcctttagctctgaaaacattggggattctcttgcaaagaagattctctgaaaatgaatgggt 6245257  T
Q  299 taagatattggagactgatttgcggcgtttacccaagggtgacagcagcaacaattattccgttctgagaat 370  Q
    ||||||||| |||||||||||| ||||||||||  || ||||   |||||||| |||||||||||| |||||    
T  6245256 taagatattagagactgatttgtggcgtttacctgagagtga---cagcaacatttattccgttctaagaat 6245188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 99 - 370
Target Start/End: Original strand, 13270423 - 13270687
Alignment:
Q  99 atttaaggcaattggaggagagtgactcttaagagtttatttgtgagatatggttttgaaggcaggaatatgtttgaatatccaaatcttgaaacgattg 198  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| | || |    
T  13270423 atttaaggcaattggaggagagtgactcttg-gagtttatttgtgagacatgcttttgaaggcaggaatatgtttgaatatccaaatcttgaatccatcg 13270521  T
Q  199 gtatgaaactagtagaaaaatgtggggtnnnnnnnttatctttagctctgaaaacactggggattctcttgcaaagaaaattctccgaaaatgaatgggt 298  Q
    |||||| | ||||||||||||||||||        ||  ||||||||||||||||| |||||||||||||||||||||||||||| |||| | |||||||    
T  13270522 gtatgagaatagtagaaaaatgtgggg------gtttgcctttagctctgaaaacattggggattctcttgcaaagaaaattctctgaaattaaatgggt 13270615  T
Q  299 taagatattggagactgatttgcggcgtttacccaagggtgacagcagcaacaattattccgttctgagaat 370  Q
    |||||||||||||||||||||| ||| |||  || | |||||||||| || || || |||| ||||||||||    
T  13270616 taagatattggagactgatttgtggcatttctccgaaggtgacagcaacagcattttttccattctgagaat 13270687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 99 - 348
Target Start/End: Complemental strand, 6169053 - 6168811
Alignment:
Q  99 atttaaggcaattggaggagagtgactcttaagagtttatttgtgagatatggttttgaaggcaggaatatgtttgaatatccaaatcttgaaacgattg 198  Q
    ||||||||||||||||||||||||||||||  |||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||    
T  6169053 atttaaggcaattggaggagagtgactcttg-gagtttatttgtaagacatgcttttgaaggcaggaatatgtttgaatatccaaatcttgaatcgattg 6168955  T
Q  199 gtatgaaactagtagaaaaatgtggggtnnnnnnnttatctttagctctgaaaacactggggattctcttgcaaagaaaattctccgaaaatgaatgggt 298  Q
    |||||||| ||||||||||||||||||        |   |||| ||||| |||||| ||||||||||||||||||||| |||||| ||||||||||||||    
T  6168954 gtatgaaaatagtagaaaaatgtgggg------ggtcgccttttgctctaaaaacattggggattctcttgcaaagaagattctctgaaaatgaatgggt 6168861  T
Q  299 taagatattggagactgatttgcggcgtttacccaagggtgacagcagca 348  Q
    ||||||||| |||||||||||| || ||||||| ||| ||||||| ||||    
T  6168860 taagatattagagactgatttgtggagtttacctaagagtgacagaagca 6168811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 99 - 342
Target Start/End: Complemental strand, 6265853 - 6265617
Alignment:
Q  99 atttaaggcaattggaggagagtgactcttaagagtttatttgtgagatatggttttgaaggcaggaatatgtttgaatatccaaatcttgaaacgattg 198  Q
    |||||| |||||||||||||||||||||||  |||||||||||||||||||| |||| |||||| |||| |||||||||||||||||||||||  |||||    
T  6265853 atttaaagcaattggaggagagtgactcttg-gagtttatttgtgagatatgcttttcaaggcaagaatgtgtttgaatatccaaatcttgaattgattg 6265755  T
Q  199 gtatgaaactagtagaaaaatgtggggtnnnnnnnttatctttagctctgaaaacactggggattctcttgcaaagaaaattctccgaaaatgaatgggt 298  Q
    | | |||| |||||| |||||||||||        ||  ||||| ||||||||||| ||||||||||||| |||||||||||||| | || |||||||||    
T  6265754 gcaagaaaatagtagcaaaatgtgggg------ggttgcctttaactctgaaaacattggggattctcttccaaagaaaattctctgtaactgaatgggt 6265661  T
Q  299 taagatattggagactgatttgcggcgtttacccaagggtgaca 342  Q
    | |||||||||||||||||||| || |||||||| |||||||||    
T  6265660 tgagatattggagactgatttgtggtgtttacccgagggtgaca 6265617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 106 - 341
Target Start/End: Complemental strand, 6142441 - 6142213
Alignment:
Q  106 gcaattggaggagagtgactcttaagagtttatttgtgagatatggttttgaaggcaggaatatgtttgaatatccaaatcttgaaacgattggtatgaa 205  Q
    |||||||||||||||| ||||||  |||||||||||||||||||| ||||  ||| |||||| |||||| ||||||||||||||||  ||| || | |||    
T  6142441 gcaattggaggagagtaactcttg-gagtttatttgtgagatatgcttttccaggtaggaatgtgtttggatatccaaatcttgaattgataggcaagaa 6142343  T
Q  206 actagtagaaaaatgtggggtnnnnnnnttatctttagctctgaaaacactggggattctcttgcaaagaaaattctccgaaaatgaatgggttaagata 305  Q
    | |||||||||| |||||||        ||  | ||||||||||||||| |||||||||||||| | ||||||||||| |||| ||||||||||| ||||    
T  6142342 aatagtagaaaagtgtgggg------ggttgccattagctctgaaaacattggggattctcttgaatagaaaattctctgaaattgaatgggttaggata 6142249  T
Q  306 ttggagactgatttgcggcgtttacccaagggtgac 341  Q
    ||||||||||||||| ||||||||||  ||||||||    
T  6142248 ttggagactgatttgtggcgtttaccagagggtgac 6142213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 101 - 340
Target Start/End: Complemental strand, 6882664 - 6882432
Alignment:
Q  101 ttaaggcaattggaggagagtgactcttaagagtttatttgtgagatatggttttgaaggcaggaatatgtttgaatatccaaatcttgaaacgattggt 200  Q
    |||| |||||||||||||||||| ||||  |||||||||||||||||||| |||| |||| |||||| | |||||||||||||||||||||  ||| ||     
T  6882664 ttaaagcaattggaggagagtgattcttg-gagtttatttgtgagatatgcttttcaaggtaggaatgtatttgaatatccaaatcttgaattgataggc 6882566  T
Q  201 atgaaactagtagaaaaatgtggggtnnnnnnnttatctttagctctgaaaacactggggattctcttgcaaagaaaattctccgaaaatgaatgggtta 300  Q
    | |||| |||||||||| |||||||        ||  ||||||| ||||||||| |||||| |||||||| || ||||||||| |||  ||||||| |||    
T  6882565 aagaaaatagtagaaaagtgtgggg------ggttgcctttagcactgaaaacattggggaatctcttgctaaaaaaattctctgaatctgaatggatta 6882472  T
Q  301 agatattggagactgatttgcggcgtttacccaagggtga 340  Q
    || ||||||||||||||||| ||||||||||| |||||||    
T  6882471 aggtattggagactgatttgtggcgtttacccgagggtga 6882432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 238 - 331
Target Start/End: Complemental strand, 6900118 - 6900025
Alignment:
Q  238 ctttagctctgaaaacactggggattctcttgcaaagaaaattctccgaaaatgaatgggttaagatattggagactgatttgcggcgtttacc 331  Q
    ||||||||||||||||| |||||| ||||||| ||||||| ||||| |||  ||| ||||||||||| ||||||||||||||  ||||||||||    
T  6900118 ctttagctctgaaaacattggggaatctcttggaaagaaagttctctgaacctgattgggttaagatgttggagactgatttctggcgtttacc 6900025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 131 - 341
Target Start/End: Original strand, 8568871 - 8569075
Alignment:
Q  131 gagtttatttgtgagatatggttttgaaggcaggaatatgtttgaatatccaaatcttgaaacgattggtatgaaactagtagaaaaatgtggggtnnnn 230  Q
    |||||||||||||| | ||| |||| |||| | |||| ||||||||||||||||||||||| ||||||| | |||  | |||||||| ||||| |         
T  8568871 gagtttatttgtgaaacatgcttttcaaggaaagaatgtgtttgaatatccaaatcttgaatcgattggaaagaagattgtagaaaagtgtggag----- 8568965  T
Q  231 nnnttatctttagctctgaaaacactggggattctcttgcaaagaaaattctccgaaaatgaatgggttaagatattggagactgatttgcggcgtttac 330  Q
       ||  |||||||| |||||||| |||||| |||||||||||||||||| ||  ||  |||||||  ||| ||||||||||||||| || ||| ||||     
T  8568966 -ggttgcctttagctgtgaaaacattggggaatctcttgcaaagaaaattttctcaaggtgaatggtctaacatattggagactgatatgtggcatttat 8569064  T
Q  331 ccaagggtgac 341  Q
    | |||||||||    
T  8569065 cgaagggtgac 8569075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 94 - 225
Target Start/End: Original strand, 6591218 - 6591348
Alignment:
Q  94 agtttatttaaggcaattggaggagagtgactcttaagagtttatttgtgagatatggttttgaaggcaggaatatgtttgaatatccaaatcttgaaac 193  Q
    |||| ||||||  ||||||||||||||||||||||  |||||||||||||||||||| ||||  ||| ||| || ||||||||||||||| ||||| |      
T  6591218 agttgatttaaatcaattggaggagagtgactcttg-gagtttatttgtgagatatgcttttcgaggtagggatgtgtttgaatatccaactcttgtatt 6591316  T
Q  194 gattggtatgaaactagtagaaaaatgtgggg 225  Q
    ||| || | |||| |||||||||| |||||||    
T  6591317 gataggcaagaaaatagtagaaaagtgtgggg 6591348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 238 - 329
Target Start/End: Complemental strand, 5268061 - 5267970
Alignment:
Q  238 ctttagctctgaaaacactggggattctcttgcaaagaaaattctccgaaaatgaatgggttaagatattggagactgatttgcggcgttta 329  Q
    |||||||| | |||||  |||| | |||||||| ||||||||||||  || ||||||||||||||||||||||||| ||| || ||||||||    
T  5268061 ctttagctgtaaaaactttgggaaatctcttgcgaagaaaattctctcaacatgaatgggttaagatattggagacagatatgtggcgttta 5267970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 256 - 313
Target Start/End: Complemental strand, 5298718 - 5298661
Alignment:
Q  256 tggggattctcttgcaaagaaaattctccgaaaatgaatgggttaagatattggagac 313  Q
    |||||| |||||||| ||||||||||||  ||  ||||||||||||||||||||||||    
T  5298718 tggggaatctcttgcgaagaaaattctctcaacgtgaatgggttaagatattggagac 5298661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 329
Target Start/End: Original strand, 6554516 - 6554556
Alignment:
Q  289 atgaatgggttaagatattggagactgatttgcggcgttta 329  Q
    |||||||| |||||||||||||||||||| || ||||||||    
T  6554516 atgaatggattaagatattggagactgatatgtggcgttta 6554556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 329
Target Start/End: Complemental strand, 6735941 - 6735901
Alignment:
Q  289 atgaatgggttaagatattggagactgatttgcggcgttta 329  Q
    |||||||| |||||||||||||||||||| || ||||||||    
T  6735941 atgaatggattaagatattggagactgatatgtggcgttta 6735901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 313
Target Start/End: Complemental strand, 7587874 - 7587802
Alignment:
Q  241 tagctctgaaaacactggggattctcttgcaaagaaaattctccgaaaatgaatgggttaagatattggagac 313  Q
    ||||| |||||||| ||||||  ||| ||||||||||||| ||  ||  ||||||| ||||||||||||||||    
T  7587874 tagctgtgaaaacattggggaaactcctgcaaagaaaattttctcaagctgaatggtttaagatattggagac 7587802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 131 - 191
Target Start/End: Complemental strand, 8589832 - 8589772
Alignment:
Q  131 gagtttatttgtgagatatggttttgaaggcaggaatatgtttgaatatccaaatcttgaa 191  Q
    |||||||||||||| | ||| |||| |||| | |||| ||| |||||||||||||||||||    
T  8589832 gagtttatttgtgacacatgcttttcaaggaaagaatgtgtgtgaatatccaaatcttgaa 8589772  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 238 - 310
Target Start/End: Original strand, 25242184 - 25242256
Alignment:
Q  238 ctttagctctgaaaacactggggattctcttgcaaagaaaattctccgaaaatgaatgggttaagatattgga 310  Q
    |||||||| | ||||||  ||||| |||||||| ||||||||||||  || ||||||||||||||||||||||    
T  25242184 ctttagctgtaaaaacaacggggaatctcttgcgaagaaaattctctcaacatgaatgggttaagatattgga 25242256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 238 - 317
Target Start/End: Original strand, 6573322 - 6573401
Alignment:
Q  238 ctttagctctgaaaacactggggattctcttgcaaagaaaattctccgaaaatgaatgggttaagatattggagactgat 317  Q
    |||||||  |||||||| |||||| |||||||||||||||||| ||  |   ||||||| ||||||||||||| ||||||    
T  6573322 ctttagccgtgaaaacattggggaatctcttgcaaagaaaattttctcagggtgaatggtttaagatattggaaactgat 6573401  T

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