View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16071_low_5 (Length: 363)
Name: NF16071_low_5
Description: NF16071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16071_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 6989192 - 6989552
Alignment:
| Q |
1 |
acaagtctaataacatatatggtacattcattcaaacattagtacagcaaataaataattcaactgttttcttattgaattagtgacggaaaa------- |
93 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
6989192 |
acaagtctaataacatatatggtacattcattcaaacattagtacagcaaataaataattgaactgttttcttattgaattagtgacggaaaatttgaga |
6989291 |
T |
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| Q |
94 |
-------aatgaaatccgtctctaatttgttcggtaattcaaccnnnnnnnagtagagatggaattaaagagtaaagataaaaggattgaaattaattat |
186 |
Q |
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|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6989292 |
cggaaaaaatgaaatccgtctctaatttggtcggtaattcaaccttcttttagtagagatggaattaaagagtaaagataaaaggattgaaattaattat |
6989391 |
T |
|
| Q |
187 |
taccaatattagaaaaagaatcagaaaatccaggtcgtggtcgtctgcctgtgctgcctcttaataaattggtactctccnnnnnnnctaaattttttct |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||| |||| |||||||| |
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| T |
6989392 |
taccaatattagaaaaagaatcagaaaatccaggtcgtggtcgtctgcctctgctgtctcttaataaattgatactctcctttttttctaatttttttct |
6989491 |
T |
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| Q |
287 |
gtctgacttgtgaacgtcatttctgccaatatatcaatctcctttgtcagcacacactaaa |
347 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6989492 |
gtctggcttgtgaacgtcatttctgccaatatatcaatctcctttgtcagcacacactaaa |
6989552 |
T |
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