View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16071_low_6 (Length: 260)
Name: NF16071_low_6
Description: NF16071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16071_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-122; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 10 - 246
Target Start/End: Original strand, 40718258 - 40718494
Alignment:
| Q |
10 |
gcagaacctgtgaaactagagcgtgttgatgatccaactcaacaattaaacctttgctatagtaccacatcagacagatataactttcctctaataacag |
109 |
Q |
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| T |
40718258 |
gcagaatctgtgaaactagagcgtgttgatgatccaactcaacaattaaacctttgctatagtaccacatcagacatatataactttcctctaataacag |
40718357 |
T |
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| Q |
110 |
cgcattttaaaggtgcggatattaagttgcatcccattagtacctttgtttccgttgccgatgacattgtttgctttgcttttaccgcttctccgggcgt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |
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| T |
40718358 |
cgcattttaaaggtgcggatattaagttgcatcccattagtacctttgtttccgttgccgatgacattgtttgctttgcttttaccacttctccgggtgt |
40718457 |
T |
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| Q |
210 |
tgccatcttcggaaacttagctcaacagaatttgttg |
246 |
Q |
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| T |
40718458 |
tgccatcttcggaaacttagctcaacagaatttgttg |
40718494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 192
Target Start/End: Original strand, 14183510 - 14183683
Alignment:
| Q |
19 |
gtgaaactagagcgtgttgatgatccaactcaacaattaaacctttgctatagtaccacatcagacagatataactttcctctaataacagcgcatttta |
118 |
Q |
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| T |
14183510 |
gtgaaactgaagcgtgttaatgatccaacccgattatttaacctttgctatagcgtcacatcagatggatatgattttcctataataacgacacatttta |
14183609 |
T |
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| Q |
119 |
aaggtgcggatattaagttgcatcccattagtacctttgtttccgttgccgatgacattgtttgctttgctttt |
192 |
Q |
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| T |
14183610 |
aaggtgcggatgttaagttgcatcctattagtacatttgttgatgttgcagatggcattgtttgtcttgctttt |
14183683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 26 - 172
Target Start/End: Original strand, 14192467 - 14192613
Alignment:
| Q |
26 |
tagagcgtgttgatgatccaactcaacaattaaacctttgctatagtaccacatcagacagatataactttcctctaataacagcgcattttaaaggtgc |
125 |
Q |
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|||| |||||||| ||||| |||||| ||||||||||||||||||| || | | || ||||| | |||||| |||| ||| ||||||||||||||| |
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| T |
14192467 |
tagaacgtgttgacgatcctactcaaacattaaacctttgctatagtgtcaaagctgagggatatgattttcctataatcacaatgcattttaaaggtgc |
14192566 |
T |
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| Q |
126 |
ggatattaagttgcatcccattagtacctttgtttccgttgccgatg |
172 |
Q |
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| T |
14192567 |
agatgtcgatttgcatcctattagcacatttgtttcggttgctgatg |
14192613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 207 - 246
Target Start/End: Original strand, 14183716 - 14183755
Alignment:
| Q |
207 |
cgttgccatcttcggaaacttagctcaacagaatttgttg |
246 |
Q |
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|||| |||||||||||||||||||||| |||||||||||| |
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| T |
14183716 |
cgtttccatcttcggaaacttagctcagcagaatttgttg |
14183755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 7e-30; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 19 - 157
Target Start/End: Complemental strand, 19648985 - 19648847
Alignment:
| Q |
19 |
gtgaaactagagcgtgttgatgatccaactcaacaattaaacctttgctatagtaccacatcagacagatataactttcctctaataacagcgcatttta |
118 |
Q |
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||||||||||| |||||||||||||| | ||||| |||||||||||| ||||||| |||||||||| |||| | |||||| |||| || || ||||||| |
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| T |
19648985 |
gtgaaactagatcgtgttgatgatcctaatcaactattaaacctttgttatagtatcacatcagaccaatatgattttcctataatcactgcacatttta |
19648886 |
T |
|
| Q |
119 |
aaggtgcggatattaagttgcatcccattagtacctttg |
157 |
Q |
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||||||| |||||||||||| | || ||||||||||||| |
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| T |
19648885 |
aaggtgcagatattaagttgaacccaattagtacctttg |
19648847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 191
Target Start/End: Original strand, 34666260 - 34666432
Alignment:
| Q |
19 |
gtgaaactagagcgtgttgatgatccaactcaacaattaaacctttgctatagtaccacatcagacagatataactttcctctaataacagcgcatttta |
118 |
Q |
| |
|
||||||||||| |||||||||||||| | ||||||||| | ||| ||||||||| | |||| | |||| | |||||| |||| || || ||||||| |
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| T |
34666260 |
gtgaaactagatcgtgttgatgatcctaatcaacaattcagcctatgctatagtttgaaatcaaatgaatatgattttcctataatcaccgcacatttta |
34666359 |
T |
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| Q |
119 |
aaggtgcggatattaagttgcatcccattagtacctttgtttccgttgccgatgacattgtttgctttgcttt |
191 |
Q |
| |
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||||||| |||||| |||||||| | ||||||||||||||| | || | |||| ||||||||||||||||| |
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| T |
34666360 |
aaggtgccgatattgagttgcattctattagtacctttgttccaattactgatggtattgtttgctttgcttt |
34666432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 191
Target Start/End: Original strand, 34646566 - 34646738
Alignment:
| Q |
19 |
gtgaaactagagcgtgttgatgatccaactcaacaattaaacctttgctatagtaccacatcagacagatataactttcctctaataacagcgcatttta |
118 |
Q |
| |
|
||||||||||| |||||||||||||| | ||||||||| | ||| ||||||||| | |||| | |||| | |||||| |||| || | ||||||| |
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| T |
34646566 |
gtgaaactagatcgtgttgatgatcctaatcaacaattcagcctatgctatagtttgaaatcaaatgaatatgattttcctataatcaccgtacatttta |
34646665 |
T |
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| Q |
119 |
aaggtgcggatattaagttgcatcccattagtacctttgtttccgttgccgatgacattgtttgctttgcttt |
191 |
Q |
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||||||| ||| || |||||||| | ||||||||||||||| | || | |||| ||||||||||||||||| |
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| T |
34646666 |
aaggtgccgatgttgagttgcattctattagtacctttgttccaattactgatggtattgtttgctttgcttt |
34646738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 156
Target Start/End: Original strand, 45645837 - 45645899
Alignment:
| Q |
94 |
tttcctctaataacagcgcattttaaaggtgcggatattaagttgcatcccattagtaccttt |
156 |
Q |
| |
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||||||||||| || || |||||||||||||| ||| || |||||||| | |||||||||||| |
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| T |
45645837 |
tttcctctaatcaccgcacattttaaaggtgctgatgttgagttgcattctattagtaccttt |
45645899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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