View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16071_low_7 (Length: 253)
Name: NF16071_low_7
Description: NF16071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16071_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 16 - 238
Target Start/End: Original strand, 53492109 - 53492331
Alignment:
| Q |
16 |
aatatccaagactaattcaccaaacccaaacaaggtgaacacccattcaaaaagaaaactcaccgtaagatgaaaatccattcaaaaagaaaatgggcag |
115 |
Q |
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| T |
53492109 |
aatatccaagactaattcaccaaacccaaacaaggtgaacacccattcaaaaagaaaactcaccgtaagatgaaaatccattcaaaaagaaaatgggcag |
53492208 |
T |
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| Q |
116 |
aattttaaggcattatgtaagacatataactacaatgcataatatcaatttttggaattgtttaagcctcttatataaagcttgaaagttttcattacgt |
215 |
Q |
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| T |
53492209 |
aattttaaggcattatgtaagacatataactacaatgcataatatcaatttttggaattgtttaagcctcttatataaagcttgaaagttttcattacgt |
53492308 |
T |
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| Q |
216 |
tacagcagccaacacattgttat |
238 |
Q |
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||||||||||||||||||||||| |
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| T |
53492309 |
tacagcagccaacacattgttat |
53492331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 91 - 180
Target Start/End: Original strand, 53500118 - 53500207
Alignment:
| Q |
91 |
atccattcaaaaagaaaatgggcagaattttaaggcattatgtaagacatataactacaatgcataatatcaatttttggaattgtttaa |
180 |
Q |
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|||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||| ||||| |
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| T |
53500118 |
atccattcaaaaagaaaatgtgcagaactttaaggcattatgtaagacataaaactacaacgcataatatcaatttttagaattttttaa |
53500207 |
T |
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