View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16071_low_8 (Length: 250)
Name: NF16071_low_8
Description: NF16071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16071_low_8 |
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| [»] chr3 (2 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 9 - 250
Target Start/End: Original strand, 39854320 - 39854564
Alignment:
| Q |
9 |
caagaatattattaataaccatacagacgaaggaatgggggcacatcacaaaatttgagcaagagtaaacaaagattctagattcaagatatagtcacac |
108 |
Q |
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| T |
39854320 |
caagaatattattaataaccatacagacgaaggaatgggggcacatcacaaaatttgagcaagagtaaacaaagattctagattcaagatatagtcacac |
39854419 |
T |
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| Q |
109 |
cttttcatttgagaagtgagagccatacctcttctctagctaaaggatgtttaaactcatggttggatttcaattatgagtgtagtttaatcatatatcg |
208 |
Q |
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| T |
39854420 |
cttttcatttgagaagtgagagccatacctcttctctagctaaaggatgtttaaactcatggttggatttcaattatgagtgtagtttaatcatatatcg |
39854519 |
T |
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| Q |
209 |
---ttgaatagataaaatattggatatataagagagatgactcat |
250 |
Q |
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| T |
39854520 |
tctttgaatagataaaatattggatatataagagagatgactcat |
39854564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 250
Target Start/End: Original strand, 28979041 - 28979073
Alignment:
| Q |
218 |
taaaatattggatatataagagagatgactcat |
250 |
Q |
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| T |
28979041 |
taaaatattggatatataagagaggtgactcat |
28979073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 250
Target Start/End: Original strand, 11199956 - 11199996
Alignment:
| Q |
210 |
tgaatagataaaatattggatatataagagagatgactcat |
250 |
Q |
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| T |
11199956 |
tgaataggtaaaatgttggatatataagagaggtgactcat |
11199996 |
T |
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