View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16072_high_3 (Length: 237)
Name: NF16072_high_3
Description: NF16072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16072_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 41731216 - 41731436
Alignment:
| Q |
1 |
ctggtggtgatgagattattcacttagtgagatgggttcattcagttgtacgagaggagtggactgccgaagtgtttgacttagagttgatgagatatcc |
100 |
Q |
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| T |
41731216 |
ctggtggtgatgagattattcacttagtgagatgggttcattcagttgtacgagaggagtggactgccgaagtgtttgacttagagttgatgagatatcc |
41731315 |
T |
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| Q |
101 |
aaatatagaagaagagatggtcgagatgttgcagatagctatgtcatgtgttgtaagaatgcctgatcagaggcctaagatgtcagaagttgtgaagatg |
200 |
Q |
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| T |
41731316 |
aaatatagaagaagagatggtcgagatgttgcagatagctatgtcatgtgttgtaagaatgcctgatcagaggcctaagatgtcagaagttgtgaagatg |
41731415 |
T |
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| Q |
201 |
atagaaaatgtgagacagatt |
221 |
Q |
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| T |
41731416 |
atagaaaatgtgagacagatt |
41731436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 9 - 211
Target Start/End: Complemental strand, 2385114 - 2384912
Alignment:
| Q |
9 |
gatgagattattcacttagtgagatgggttcattcagttgtacgagaggagtggactgccgaagtgtttgacttagagttgatgagatatccaaatatag |
108 |
Q |
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| T |
2385114 |
gatgagattgtccaccttgtgagatgggttcattcagttgtgagagaggagtggacagctgaagtatttgacttagagcttatgcgatgtcctaatatag |
2385015 |
T |
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| Q |
109 |
aagaagagatggtcgagatgttgcagatagctatgtcatgtgttgtaagaatgcctgatcagaggcctaagatgtcagaagttgtgaagatgatagaaaa |
208 |
Q |
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| T |
2385014 |
aagaagagatggtagagatgttacagatagccatgtcatgtgctacaaggatgcctgatcaaagacctatgatgtcagaaattgtaaagatgatagaaaa |
2384915 |
T |
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| Q |
209 |
tgt |
211 |
Q |
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||| |
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| T |
2384914 |
tgt |
2384912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 130
Target Start/End: Complemental strand, 9836545 - 9836467
Alignment:
| Q |
52 |
gagaggagtggactgccgaagtgtttgacttagagttgatgagatatccaaatatagaagaagagatggtcgagatgtt |
130 |
Q |
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|||| ||||||||| | ||||||||||| |||| || |||||||||| |||||||| ||||| ||||| |||||||| |
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| T |
9836545 |
gagaagagtggacttctgaagtgtttgatttagtcttattgagatatcctaatatagaggaagaaatggttgagatgtt |
9836467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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