View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16072_low_1 (Length: 704)
Name: NF16072_low_1
Description: NF16072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16072_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 570; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 570; E-Value: 0
Query Start/End: Original strand, 43 - 677
Target Start/End: Complemental strand, 31037475 - 31036835
Alignment:
| Q |
43 |
atgataggtaaagacgtaacaactacttcattgagcagggggcggaagggtcggcttgtcccggtacagagtggcaaagccattttgcagatagaacttg |
142 |
Q |
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| T |
31037475 |
atgataggtaaagacttaacaactacttcattgagcagggggcggaagggtcggcttgtcccggtacagggtggcaaagccattttccaaatagaacttg |
31037376 |
T |
|
| Q |
143 |
atggaaagagaattttcaaatccctggagaattgctgggatacaaagtagttgaccttgtttccatgtgaatgattgtggtgaagaaataatgcctttct |
242 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31037375 |
atggaaagggaattttcaaatccctggagaattgctgggatacaaagtagttgaccttgtttccatgtgaatgattgtggtgaagaaataatgcctttct |
31037276 |
T |
|
| Q |
243 |
gtgaacattgaacaaagtgttgatgttgaagggttccatgatgaagacaaaacaacacatgatgtttaggtttcacacaaatgttttcgacactagaatg |
342 |
Q |
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| T |
31037275 |
gtgaacattgaacaaagtgttgatgttgaagggttccatgatgaagacagaacaacacatgatgcttaggtttcacacaaatgttttcgacactagaatg |
31037176 |
T |
|
| Q |
343 |
tgacatgaaaggag------tcaagtattgttatctttaagaaggaagaaaatagagctgagagagaatgttcaaaaaggaatagtaccttttccttcgt |
436 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31037175 |
tgacatgaaaggagatattgtcaagtattgttatctttaagaaggaagaaaatagagctgagagagaatgttcaaaaaggaatagtaccttttccttcgt |
31037076 |
T |
|
| Q |
437 |
ctacaaactacatcagaatgagaatgtacctgtaatatactatgttttcaactaaggtaccacacaagctttaagaaacttgaccaaaccttaatgtcaa |
536 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31037075 |
ctacaaactacatcagaatgagaatgtacctgtaatatactatgttttcaactaaggtaccacacaagctttaagaaacttgaccaaaccttaatgtcaa |
31036976 |
T |
|
| Q |
537 |
ataatccaactttgtatcagcttctctatatacttttacacgatgcaaccttctctgtatacgatcttttccattcactggccatcggccctccattaga |
636 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |
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| T |
31036975 |
ataatccaactttgtctcagcttctctatatacttttacacgatacaaccttctctgtatacgattttttccattcactggccctcggccctccattaga |
31036876 |
T |
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| Q |
637 |
ccaaacgccaacgcctttgccatccagcgcatttgatgagt |
677 |
Q |
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| T |
31036875 |
ccatacgccaacgcctttgccatccagcgcatttgatgagt |
31036835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 8e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 117 - 200
Target Start/End: Complemental strand, 33536538 - 33536455
Alignment:
| Q |
117 |
caaagccattttgcagatagaacttgatggaaagagaattttcaaatccctggagaattgctgggatacaaagtagttgacctt |
200 |
Q |
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|||||||||| | |||||| |||||||| ||||| |||||||||||||||| | |||||||||||||||||||||||||||||| |
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| T |
33536538 |
caaagccattgtccagatataacttgatcgaaagggaattttcaaatccctagtgaattgctgggatacaaagtagttgacctt |
33536455 |
T |
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