View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16072_low_2 (Length: 399)
Name: NF16072_low_2
Description: NF16072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16072_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 18 - 381
Target Start/End: Complemental strand, 41630407 - 41630047
Alignment:
| Q |
18 |
gaagttgatgaagaagggatcatgagatgagatctcttgtgaccaccaagtgcttgaccagaaccaaaaaccttaaaacaaaatggacattcaaaaatct |
117 |
Q |
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| T |
41630407 |
gaagttgatgaagaagggatcatgagatgagatctcttgtgaccaccaagtgcttgaccagaaccaaaaaccttaaaacaaaatggacattcaaaaatct |
41630308 |
T |
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| Q |
118 |
tatcatcgttaccattaccattcttcttcgcttcatcgcgacaacaaatacttctatgacttcccaatgctctagaagatcgaaatgttttcccacaatt |
217 |
Q |
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| T |
41630307 |
tatcatcgttaccattaccattcttc---gcttcatcgcgacaacaaatacttctatgacttcccaatgctctagaagatcgaaatgttttcccacaatt |
41630211 |
T |
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| Q |
218 |
ttcgcataaatgcttcccacgaactcgtttcaataacttcaccttcgatattttctccaccgatccctcatcttcttcttgttccacattgttgtcgttg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
41630210 |
ttcgcataaatgcttcccacgaactcgtttcaataacttcaccttcgatattttctccaccgatccctcatcttcttcttgttccacattgttgacgttg |
41630111 |
T |
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| Q |
318 |
ttcatctttcgactccatttgtccctcgaaagcatcatgagacacatagcaacatcttcttcag |
381 |
Q |
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| T |
41630110 |
ttcatctttcgactccatttgtccctcgaaagcatcatgagacacatagcaacatcttcttcag |
41630047 |
T |
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