View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16073_high_14 (Length: 297)

Name: NF16073_high_14
Description: NF16073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16073_high_14
NF16073_high_14
[»] chr4 (9 HSPs)
chr4 (1-280)||(36296526-36296805)
chr4 (1-280)||(35072753-35073032)
chr4 (1-280)||(35106828-35107107)
chr4 (1-245)||(35097685-35097929)
chr4 (1-183)||(35098036-35098218)
chr4 (1-225)||(36940548-36940772)
chr4 (19-177)||(36961300-36961458)
chr4 (130-245)||(36935979-36936094)
chr4 (128-249)||(35072040-35072161)
[»] chr6 (2 HSPs)
chr6 (1-280)||(24014252-24014531)
chr6 (1-280)||(24040809-24041088)
[»] chr1 (1 HSPs)
chr1 (96-275)||(3123046-3123225)
[»] chr5 (3 HSPs)
chr5 (1-242)||(26578963-26579204)
chr5 (1-71)||(34919135-34919205)
chr5 (158-206)||(34919000-34919048)


Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 36296526 - 36296805
Alignment:
Q  1 ccattctccattgcagctttcacctgatccatcttggcattttcgggcaatctgaacctcctcataaactttccactgctacgctccacgcgatgccatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36296526 ccattctccattgcagctttcacctgatccatcttggcattttcgggcaatctgaacctcctcataaactttccactgctacgctccacgcgatgccatt 36296625  T
Q  101 gattgttcttgtcttctttctcaacgttcctctctccactaatccgaagaactctgtcatcttcaatttcaaccttcacttcttccttcttcagtccagg 200  Q
    | |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36296626 ggttgttcttgtcttctttctcaacgttcctctctccactaatctgaagaactctgtcatcttcaatttcaaccttcacttcttccttcttcagtccagg 36296725  T
Q  201 aagatcagctttaaacacgtgtgcttctggggtctccttccaatcaatcctggtgctcacaaaagcagaattctcctgag 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36296726 aagatcagctttaaacacgtgtgcttctggggtctccttccaatcaatcctggtgctcacaaaagcagaattctcctgag 36296805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 35072753 - 35073032
Alignment:
Q  1 ccattctccattgcagctttcacctgatccatcttggcattttcgggcaatctgaacctcctcataaactttccactgctacgctccacgcgatgccatt 100  Q
    ||||||||||||||||||||||| |||||||| || ||||| || ||  |||| ||||||||||| || |||||||||||||||||||| ||||||||||    
T  35072753 ccattctccattgcagctttcacttgatccattttcgcattctctggttatctaaacctcctcatgaattttccactgctacgctccacacgatgccatt 35072852  T
Q  101 gattgttcttgtcttctttctcaacgttcctctctccactaatccgaagaactctgtcatcttcaatttcaaccttcacttcttccttcttcagtccagg 200  Q
    |||  ||||| |||||||| |||| ||||||||| || || ||| ||||||| || |||||||||||||||||||||||||| |||||||||||||||||    
T  35072853 gatcattcttatcttctttttcaatgttcctctcaccgcttatctgaagaaccctatcatcttcaatttcaaccttcacttcctccttcttcagtccagg 35072952  T
Q  201 aagatcagctttaaacacgtgtgcttctggggtctccttccaatcaatcctggtgctcacaaaagcagaattctcctgag 280  Q
    ||||||||| || ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35072953 aagatcagccttgaacacatgagcttctggggtctccttccaatcaatcctggtgctcacaaaagcagaattctcctgag 35073032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 35107107 - 35106828
Alignment:
Q  1 ccattctccattgcagctttcacctgatccatcttggcattttcgggcaatctgaacctcctcataaactttccactgctacgctccacgcgatgccatt 100  Q
    ||||||||||| ||||||||||| |||||||| || ||||| || || ||||| ||||||||||| || |||||||||||||||||||| ||||||||||    
T  35107107 ccattctccatagcagctttcacttgatccattttcgcattctctggtaatctaaacctcctcatgaattttccactgctacgctccacacgatgccatt 35107008  T
Q  101 gattgttcttgtcttctttctcaacgttcctctctccactaatccgaagaactctgtcatcttcaatttcaaccttcacttcttccttcttcagtccagg 200  Q
    |||  ||||| |||||||| |||| ||||||||| || || ||| ||||||| || |||||||||||||||||||||||||| |||||||||||||||||    
T  35107007 gatcattcttatcttctttttcaaagttcctctcaccgcttatctgaagaaccctatcatcttcaatttcaaccttcacttcctccttcttcagtccagg 35106908  T
Q  201 aagatcagctttaaacacgtgtgcttctggggtctccttccaatcaatcctggtgctcacaaaagcagaattctcctgag 280  Q
    ||||||||| || ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35106907 aagatcagccttgaacacatgagcttctggggtctccttccaatcaatcctggtgctcacaaaagcagaattctcctgag 35106828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 35097929 - 35097685
Alignment:
Q  1 ccattctccattgcagctttcacctgatccatcttggcattttcgggcaatctgaacctcctcataaactttccactgctacgctccacgcgatgccatt 100  Q
    ||||||||||||||||||||||| || ||||| || ||||| || |||||||||||||||||||| || || ||||||||||||||||| ||||||||||    
T  35097929 ccattctccattgcagctttcacttggtccattttcgcattctcaggcaatctgaacctcctcatgaatttcccactgctacgctccacacgatgccatt 35097830  T
Q  101 gattgttcttgtcttctttctcaacgttcctctctccactaatccgaagaactctgtcatcttcaatttcaaccttcacttcttccttcttcagtccagg 200  Q
    ||| |||||| |||||||||||||| ||||||||||| || ||| ||||||| || ||| ||||||||||||||||||||||||||||||||||||||||    
T  35097829 gatcgttcttatcttctttctcaacattcctctctccgcttatctgaagaaccctatcaccttcaatttcaaccttcacttcttccttcttcagtccagg 35097730  T
Q  201 aagatcagctttaaacacgtgtgcttctggggtctccttccaatc 245  Q
    ||||||||| |  ||||| ||||||||||||||||||||||||||    
T  35097729 aagatcagcctcgaacacatgtgcttctggggtctccttccaatc 35097685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 35098218 - 35098036
Alignment:
Q  1 ccattctccattgcagctttcacctgatccatcttggcattttcgggcaatctgaacctcctcataaactttccactgctacgctccacgcgatgccatt 100  Q
    ||||||||||||||||||||||| || ||||| || ||||| || |||||||||||||||||||| || || ||||||||||||||||| ||||||||||    
T  35098218 ccattctccattgcagctttcacttggtccattttcgcattctcaggcaatctgaacctcctcatgaatttcccactgctacgctccacacgatgccatt 35098119  T
Q  101 gattgttcttgtcttctttctcaacgttcctctctccactaatccgaagaactctgtcatcttcaatttcaaccttcacttct 183  Q
    ||| |||||| |||||||||||||| ||||||||||| || ||| ||||||| || ||| |||||||||||||||||||||||    
T  35098118 gatcgttcttatcttctttctcaacattcctctctccgcttatctgaagaaccctatcaccttcaatttcaaccttcacttct 35098036  T

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Target: chr4; HSP #6
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 36940548 - 36940772
Alignment:
Q  1 ccattctccattgcagctttcacctgatccatcttggcattttcgggcaatctgaacctcctcataaactttccactgctacgctccacgcgatgccatt 100  Q
    ||||||||||||||||||||||  |||||||| || ||||| || |||||||| || |||||||| ||||| |||||||||||||||||| |||||||||    
T  36940548 ccattctccattgcagctttcatttgatccattttagcattctcaggcaatcttaatctcctcatgaacttcccactgctacgctccacgggatgccatt 36940647  T
Q  101 gattgttcttgtcttctttctcaacgttcctctctccactaatccgaagaactctgtcatcttcaatttcaaccttcacttcttccttcttcagtccagg 200  Q
    ||| |||||| ||||||||||||||| | || | |||||| ||| ||||||| || ||||||||||| || || ||| |||| |||||||||| ||| ||    
T  36940648 gatcgttcttatcttctttctcaacgcttctttttccacttatctgaagaaccctatcatcttcaatctctactttcgcttcctccttcttcattcctgg 36940747  T
Q  201 aagatcagctttaaacacgtgtgct 225  Q
    || |||||| || ||||||||||||    
T  36940748 aaaatcagcattgaacacgtgtgct 36940772  T

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Target: chr4; HSP #7
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 19 - 177
Target Start/End: Complemental strand, 36961458 - 36961300
Alignment:
Q  19 ttcacctgatccatcttggcattttcgggcaatctgaacctcctcataaactttccactgctacgctccacgcgatgccattgattgttcttgtcttctt 118  Q
    ||||||||||||||||| ||||| || | |||||| ||| ||||||| || || ||||||||| ||||||||| |||||||| ||||||||| |||||||    
T  36961458 ttcacctgatccatcttagcattctctgccaatctaaacttcctcatgaatttcccactgctaagctccacgcaatgccattcattgttcttatcttctt 36961359  T
Q  119 tctcaacgttcctctctccactaatccgaagaactctgtcatcttcaatttcaaccttc 177  Q
    |||||||| | |||||||| || ||| ||||||| || ||| ||||||| || ||||||    
T  36961358 tctcaacgcttctctctccgctgatctgaagaaccctatcaacttcaatctctaccttc 36961300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 130 - 245
Target Start/End: Original strand, 36935979 - 36936094
Alignment:
Q  130 ctctctccactaatccgaagaactctgtcatcttcaatttcaaccttcacttcttccttcttcagtccaggaagatcagctttaaacacgtgtgcttctg 229  Q
    |||||||| || ||| |||||||  | ||||||||||| || || |||||||| |||||||||| ||| |||||||| || || ||||| | | ||||||    
T  36935979 ctctctccgcttatctgaagaaccatatcatcttcaatctctactttcacttcctccttcttcattcctggaagatccgccttgaacacatctacttctg 36936078  T
Q  230 gggtctccttccaatc 245  Q
    ||||||||||||||||    
T  36936079 gggtctccttccaatc 36936094  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 249
Target Start/End: Original strand, 35072040 - 35072161
Alignment:
Q  128 tcctctctccactaatccgaagaactctgtcatcttcaatttcaaccttcacttcttccttcttcagtccaggaagatcagctttaaacacgtgtgcttc 227  Q
    ||||||||||  | ||| |||| |||||  |||||||||  ||||| |||||||| || || ||||| || || | ||||||||| || || || |||||    
T  35072040 tcctctctcctgttatctgaagcactcttccatcttcaacctcaactttcacttcctctttgttcagccctggtacatcagctttgaatacatgggcttc 35072139  T
Q  228 tggggtctccttccaatcaatc 249  Q
    ||| || |||||||||||||||    
T  35072140 tggagtttccttccaatcaatc 35072161  T

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Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 24014252 - 24014531
Alignment:
Q  1 ccattctccattgcagctttcacctgatccatcttggcattttcgggcaatctgaacctcctcataaactttccactgctacgctccacgcgatgccatt 100  Q
    ||||||||||||||||||||||| |||||||| || |||||||||||||| ||||| |||||||| |||||||| ||||| |||||||| ||||||||||    
T  24014252 ccattctccattgcagctttcacttgatccattttcgcattttcgggcaacctgaatctcctcatgaactttccgctgctgcgctccacacgatgccatt 24014351  T
Q  101 gattgttcttgtcttctttctcaacgttcctctctccactaatccgaagaactctgtcatcttcaatttcaaccttcacttcttccttcttcagtccagg 200  Q
    ||| |||||| |||||||||||||| ||||||||||| || ||| ||||||| || ||| |||||||||||||||||||||| |||||||||||||||||    
T  24014352 gatcgttcttatcttctttctcaacattcctctctccgcttatctgaagaaccctatcaccttcaatttcaaccttcacttcctccttcttcagtccagg 24014451  T
Q  201 aagatcagctttaaacacgtgtgcttctggggtctccttccaatcaatcctggtgctcacaaaagcagaattctcctgag 280  Q
    ||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24014452 aagatcagccttgaacacatgtgcttctggggtctccttccaatcaatcctggtgctcacaaaagcagaattctcctgag 24014531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 24040809 - 24041088
Alignment:
Q  1 ccattctccattgcagctttcacctgatccatcttggcattttcgggcaatctgaacctcctcataaactttccactgctacgctccacgcgatgccatt 100  Q
    ||||||||||||||||||||||| |||||||| || ||||| || || ||||| ||||||||||| || |||||||||||||||||||| ||||||||||    
T  24040809 ccattctccattgcagctttcacttgatccattttcgcattctctggtaatctaaacctcctcatgaattttccactgctacgctccacacgatgccatt 24040908  T
Q  101 gattgttcttgtcttctttctcaacgttcctctctccactaatccgaagaactctgtcatcttcaatttcaaccttcacttcttccttcttcagtccagg 200  Q
    |||  ||||| |||||||| |||||||||||||| || || ||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  24040909 gatcattcttatcttctttttcaacgttcctctcaccgcttatctgaagaaccctatcatcttcaatttcaaccttcacttcttccttcttcagtccagg 24041008  T
Q  201 aagatcagctttaaacacgtgtgcttctggggtctccttccaatcaatcctggtgctcacaaaagcagaattctcctgag 280  Q
    ||||||||| || ||||| |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  24041009 aagatcagccttgaacacatgtgcttctggggtctccttccaatcgatcctggtgctcgcaaaagcagaattctcctgag 24041088  T

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Target: chr1 (Bit Score: 72; Significance: 9e-33; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 96 - 275
Target Start/End: Complemental strand, 3123225 - 3123046
Alignment:
Q  96 ccattgattgttcttgtcttctttctcaacgttcctctctccactaatccgaagaactctgtcatcttcaatttcaaccttcacttcttccttcttcagt 195  Q
    |||| ||| |||||||||||||||||||||| |||| ||||| || ||| |||||||  | ||||||||||||||||||||||| |||||||||||||      
T  3123225 ccatcgatcgttcttgtcttctttctcaacggtcctttctccgcttatctgaagaaccttatcatcttcaatttcaaccttcacctcttccttcttcaac 3123126  T
Q  196 ccaggaagatcagctttaaacacgtgtgcttctggggtctccttccaatcaatcctggtgctcacaaaagcagaattctc 275  Q
    || |||||||||||||| ||||| ||||||||| | || ||||| || || |  || ||||||||||| || ||||||||    
T  3123125 cctggaagatcagctttgaacacatgtgcttctagagtttcctttcagtccactcttgtgctcacaaatgcggaattctc 3123046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 26579204 - 26578963
Alignment:
Q  1 ccattctccattgcagctttcacctgatccatcttggcattttcgggcaatctgaacctcctcataaactttccactgctacgctccacgcgatgccatt 100  Q
    |||||||||||  |||||||||||| ||||| ||| ||||| || ||||| || |||| ||  | |||  ||||   ||| || || |||||||||||      
T  26579204 ccattctccatcccagctttcacctcatccaccttagcattctccggcaacctaaaccgccggagaaaacttccctggcttcgttcaacgcgatgccagg 26579105  T
Q  101 gattgttcttgtcttctttctcaacgttcctctctccactaatccgaagaactctgtcatcttcaatttcaaccttcacttcttccttcttcagtccagg 200  Q
     ||  ||||||||||| |||||||  |||||||||||||| |||   | ||| |  || |||||||| |||||||||||||| ||||||||||  || ||    
T  26579104 tatcattcttgtcttccttctcaattttcctctctccacttatcttcaaaacacgatcctcttcaatctcaaccttcacttcctccttcttcacgccggg 26579005  T
Q  201 aagatcagctttaaacacgtgtgcttctggggtctccttcca 242  Q
    |||||| ||||| || | ||||||||| || || ||||||||    
T  26579004 aagatcggctttgaagatgtgtgcttccggtgtttccttcca 26578963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 34919205 - 34919135
Alignment:
Q  1 ccattctccattgcagctttcacctgatccatcttggcattttcgggcaatctgaacctcctcataaactt 71  Q
    |||||||||||  ||||||| ||||||||||| ||  |||| || ||||| || |||||||||||||||||    
T  34919205 ccattctccataccagctttaacctgatccattttaacattctcaggcaacctaaacctcctcataaactt 34919135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 206
Target Start/End: Complemental strand, 34919048 - 34919000
Alignment:
Q  158 catcttcaatttcaaccttcacttcttccttcttcagtccaggaagatc 206  Q
    ||||||| |||||||| ||||||||||| |||||||  |||||||||||    
T  34919048 catcttctatttcaactttcacttcttctttcttcaaaccaggaagatc 34919000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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