View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16073_high_21 (Length: 238)
Name: NF16073_high_21
Description: NF16073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16073_high_21 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-122; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 41471528 - 41471748
Alignment:
| Q |
1 |
ttttggaagcagctaagagaaagttttctgatgaagtgaatgagaaaaaagcaactaaggcacaacttcgcgaaaaatggcaattgaaagcaatcgagtg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41471528 |
ttttggaagcagctaagagaaagttttctgatgaagtgaatgagaaaaaagcaactaaggcacaacttcgcgaaaaatggcaattgaaagcaatcgagtg |
41471627 |
T |
|
| Q |
101 |
gtgctctacgtgggatgactgtcttaaagatcccagctggcatccgttcaaagttgtgactgataaagacgggaaatccaaggtacaatgaatgacttcc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41471628 |
gtgctctacgtgggatgactgtcttaaagatcccagctggcatccgttcaaagttgtgactgataaagacgggaaatccaaggtacaatgaatgacttcc |
41471727 |
T |
|
| Q |
201 |
ggaattatttttgttaaagtt |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
41471728 |
ggaattatttttgttaaagtt |
41471748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 41478416 - 41478636
Alignment:
| Q |
1 |
ttttggaagcagctaagagaaagttttctgatgaagtgaatgagaaaaaagcaactaaggcacaacttcgcgaaaaatggcaattgaaagcaatcgagtg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41478416 |
ttttggaagcagctaagagaaagttttctgatgaagtgaatgagaaaaaagcaactaaggcacaacttcgcgaaaaatggcaattgaaagcaatcgagtg |
41478515 |
T |
|
| Q |
101 |
gtgctctacgtgggatgactgtcttaaagatcccagctggcatccgttcaaagttgtgactgataaagacgggaaatccaaggtacaatgaatgacttcc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41478516 |
gtgctctacgtgggatgactgtcttaaagatcccagctggcatccgttcaaagttgtgactgataaagacgggaaatccaaggtacaatgaatgacttcc |
41478615 |
T |
|
| Q |
201 |
ggaattatttttgttaaagtt |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
41478616 |
ggaattatttttgttaaagtt |
41478636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 4 - 191
Target Start/End: Original strand, 40752751 - 40752938
Alignment:
| Q |
4 |
tggaagcagctaagagaaagttttctgatgaagtgaatgagaaaaaagcaactaaggcacaacttcgcgaaaaatggcaattgaaagcaatcgagtggtg |
103 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||||||||| ||| |||||| | ||||| || | || || ||||||||||||||||||| |
|
|
| T |
40752751 |
tggaagcagctaagagaaaaatttctgatgaaatgaatgagaaagcagctactaagagaaaactttcagaggcagggaaaatgaaagcaatcgagtggtg |
40752850 |
T |
|
| Q |
104 |
ctctacgtgggatgactgtcttaaagatcccagctggcatccgttcaaagttgtgactgataaagacgggaaatccaaggtacaatga |
191 |
Q |
| |
|
||| | ||||||||||||| |||||||||| ||||||||||||||||||||||| || |||||||| ||||| ||||||||||||||| |
|
|
| T |
40752851 |
ctcaaagtgggatgactgtgttaaagatccaagctggcatccgttcaaagttgtaaccgataaagaagggaactccaaggtacaatga |
40752938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 5 - 188
Target Start/End: Original strand, 41485628 - 41485811
Alignment:
| Q |
5 |
ggaagcagctaagagaaagttttctgatgaagtgaatgagaaaaaagcaactaaggcacaacttcgcgaaaaatggcaattgaaagcaatcgagtggtgc |
104 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||||||| || ||||||| | || || || || |||| |||||||||||||||||||| |
|
|
| T |
41485628 |
ggaagcagctaagagaaaaatttctgatgaaatgaatgagaaagcagtaactaagagagaattttcagagaaggtgcaaatgaaagcaatcgagtggtgc |
41485727 |
T |
|
| Q |
105 |
tctacgtgggatgactgtcttaaagatcccagctggcatccgttcaaagttgtgactgataaagacgggaaatccaaggtacaa |
188 |
Q |
| |
|
|| | ||||||||||||| |||| ||||| ||||||||||||||||||||||| ||||| | ||| ||||| |||||||||||| |
|
|
| T |
41485728 |
tcaaagtgggatgactgtgttaaggatcctagctggcatccgttcaaagttgtaactgacagagaagggaactccaaggtacaa |
41485811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 80 - 191
Target Start/End: Original strand, 52481723 - 52481834
Alignment:
| Q |
80 |
gcaattgaaagcaatcgagtggtgctctacgtgggatgactgtcttaaagatcccagctggcatccgttcaaagttgtgactgataaagacgggaaatcc |
179 |
Q |
| |
|
||||||||||||| ||||||||||||| | ||||||||| |||||||||||||| || |||||||| |||||| |||| ||||||||| ||||||||| |
|
|
| T |
52481723 |
gcaattgaaagcagtcgagtggtgctcaaagtgggatgaatgtcttaaagatccaagttggcatcccttcaaaattgtagttgataaagaagggaaatcc |
52481822 |
T |
|
| Q |
180 |
aaggtacaatga |
191 |
Q |
| |
|
|||||||||||| |
|
|
| T |
52481823 |
aaggtacaatga |
52481834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 166
Target Start/End: Complemental strand, 16407846 - 16407685
Alignment:
| Q |
5 |
ggaagcagctaagagaaagttttctgatgaagtgaatgagaaaaaagcaactaaggcacaacttcgcgaaaaatggcaattgaaagcaatcgagtggtgc |
104 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||||||| | ||||| | ||||| | | ||| | ||| |||||||| ||||||||| |
|
|
| T |
16407846 |
ggaagcagctaagagaaagttctcggatgaagtgaatgagaaggcaatgactaaaaaaaaactttccaataaagtgaaatcgaaagcaaatgagtggtgc |
16407747 |
T |
|
| Q |
105 |
tctacgtgggatgactgtcttaaagatcccagctggcatccgttcaaagttgtgactgataa |
166 |
Q |
| |
|
|| | ||||||||| | ||||| ||||| |||||||||||||||||| |||| |||||||| |
|
|
| T |
16407746 |
tcaaagtgggatgaatatcttagcgatccaagctggcatccgttcaaatttgtaactgataa |
16407685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 52481632 - 52481678
Alignment:
| Q |
1 |
ttttggaagcagctaagagaaagttttctgatgaagtgaatgagaaa |
47 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||||||| |||| |
|
|
| T |
52481632 |
ttttggaagcagctaagaggaagttttctgatgaggtgaatgggaaa |
52481678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University